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Sample 3300013071
3300013071: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft OP (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300013071 Open in IMG/M GOLD Reference Gs0127392 | Gp0191754 | Ga0164273 Sample Name Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft OP (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 72936163 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
Location Information
Location USA: Emeryville, California Coordinates Lat. (o ) 37.83 Long. (o ) -122.29 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F011188 Metagenome / Metatranscriptome 294 Y F034415 Metagenome / Metatranscriptome 175 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0164273_1031884 Ga0164273_10318843 F034415 MTGAPGHKKSQHLIEAEAYRRIMAGEAPETLGAFAQQLLDWLQTAYPGAVPGSLATVEEQIRETWDRRHDLIRGG* Ga0164273_1100443 Ga0164273_11004431 F011188 RATLEGFRFMETYNIYMDETPVSGFDDEAFEVEFRVVPSSRDDSDQQEAVVAGLDLVDLINLRDALQQEIDNYALQALEAQAEALEDGDDEE* Ga0164273_1101865 Ga0164273_11018651 F034415 MSAAATHTGHKRLQHLVEHEAYRRIMAGEAPETLSEFARELQGWLQRTHPDAAPTTPDAIENQIR
