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Sample 3300013057
3300013057: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft MG (Metagenome Metatranscriptome)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300013057 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0127392 | Gp0191753 | Ga0164272 |
| Sample Name | Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft MG (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 37514324 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales | 1 |
| Not Available | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Location Information |
| Location | USA: Emeryville, California |
| Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F012224 | Metagenome / Metatranscriptome | 282 | N |
| F094455 | Metagenome / Metatranscriptome | 106 | Y |
| F102635 | Metagenome / Metatranscriptome | 101 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0164272_115790 | Ga0164272_1157901 | F102635 | TLFGDDEELMRAKADCVYHILRQIVEGIPTVQITTRLPENLSEEQLAILTESNRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKDARY* |
| Ga0164272_135166 | Ga0164272_1351662 | F094455 | MYNVTEFPIDRLSDRELRIREWEVVMSGGYGSSEHKRLQSEIRRRTVNLYAAAQPYTTH* |
| Ga0164272_148999 | Ga0164272_1489991 | F012224 | MITQESTMIQVKCVGGECNGITVRVEPQPTYYEVIDPRDPARRDYYILEVGQWGARLVPEST |
