NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012890

3300012890: Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - M



Overview

Basic Information
IMG/M Taxon OID3300012890 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127370 | Gp0191373 | Ga0160428
Sample NameSolar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - M
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size640755331
Sequencing Scaffolds27
Novel Protein Genes29
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus8
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia rickettsii1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetidae → Mycosphaerellales → Mycosphaerellaceae → Cercospora → Cercospora sojina1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSolar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa
TypeEngineered
TaxonomyEngineered → Built Environment → Solar Panel → Unclassified → Unclassified → Solar Cell Surface → Solar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationUSA: Building 30, Lawrence Berkeley National Lab, Berkeley, California
CoordinatesLat. (o)37.876387Long. (o)-122.246777Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002238Metagenome / Metatranscriptome579Y
F040969Metagenome160Y
F045048Metagenome / Metatranscriptome153Y
F046195Metagenome151Y
F059667Metagenome / Metatranscriptome133Y
F088701Metagenome / Metatranscriptome109N
F104247Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0160428_1002089All Organisms → cellular organisms → Bacteria12983Open in IMG/M
Ga0160428_1003228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus8930Open in IMG/M
Ga0160428_1005024All Organisms → cellular organisms → Bacteria6372Open in IMG/M
Ga0160428_1005825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus5741Open in IMG/M
Ga0160428_1005898All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus5702Open in IMG/M
Ga0160428_1011942All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus3620Open in IMG/M
Ga0160428_1014140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus3283Open in IMG/M
Ga0160428_1021190All Organisms → cellular organisms → Bacteria2599Open in IMG/M
Ga0160428_1032097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus2064Open in IMG/M
Ga0160428_1032410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus2053Open in IMG/M
Ga0160428_1037649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus1889Open in IMG/M
Ga0160428_1042525All Organisms → cellular organisms → Bacteria1766Open in IMG/M
Ga0160428_1059414Not Available1468Open in IMG/M
Ga0160428_1137824All Organisms → cellular organisms → Bacteria907Open in IMG/M
Ga0160428_1172807All Organisms → cellular organisms → Bacteria792Open in IMG/M
Ga0160428_1188535All Organisms → cellular organisms → Bacteria753Open in IMG/M
Ga0160428_1226510All Organisms → cellular organisms → Bacteria674Open in IMG/M
Ga0160428_1254654All Organisms → cellular organisms → Bacteria → Proteobacteria628Open in IMG/M
Ga0160428_1273508All Organisms → cellular organisms → Bacteria602Open in IMG/M
Ga0160428_1281596Not Available591Open in IMG/M
Ga0160428_1283212All Organisms → cellular organisms → Bacteria589Open in IMG/M
Ga0160428_1284978Not Available587Open in IMG/M
Ga0160428_1289604All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi581Open in IMG/M
Ga0160428_1291129All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia rickettsii580Open in IMG/M
Ga0160428_1323007All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetidae → Mycosphaerellales → Mycosphaerellaceae → Cercospora → Cercospora sojina545Open in IMG/M
Ga0160428_1361616All Organisms → cellular organisms → Bacteria509Open in IMG/M
Ga0160428_1370618Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0160428_1002089Ga0160428_10020892F104247MQLCILKRMPSTPFPLRLYPTESAARKAVLALADFRGERLTVVLYALLPADDKKPTYLLSSSIRLTVPEKRWVEAHRATVVKLGTFYPRRNFKPTWFGDISQSHRSE*
Ga0160428_1003228Ga0160428_10032288F104247LRLYPTEAAARKAGLKLADFSGERLATTLCALLPTGEKKPTYLLSSTYRLTVAEKRWVQEHQAIVTKLGRFPIGGNYMPLQTNILRKKKTAE*
Ga0160428_1004635Ga0160428_10046352F002238MVASEGENVWLMAKAKELTEFERGFQAGILAARHWHEAQSMQALVQSRRTRFPKNLEREAEVHTRSAEMMDTLSPEDV*
Ga0160428_1005024Ga0160428_10050248F104247MHFCILKTMPSTPLPLRLYPTEIAARKAGLVLADFRGERRTLVLYVLLPEGDKKPTFLLSSSLRLTVAEKHWVEEHQAQVTKVGTFYPGRNFAPLQTNMVRGRKTSTQA*
Ga0160428_1005825Ga0160428_10058254F104247MSVSPPPLRLYPTEVAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPVGGNYMPLQTNMLRSKKTSE*
Ga0160428_1005898Ga0160428_10058982F104247LDGFGTLIHASFMTNALDAGATLPNPCILNGMPSTSPPLRLFLTEAAARKAGLALADFRGERLSMVLYALLPEGEKKPTYLLSNSIRLTVAEKRWVEEHQATVTKLGTFHPGRNFAPLQMNMVRRQKPTEQK*
Ga0160428_1011942Ga0160428_10119422F104247MRVPAVPLRLYPTEAAAKKAGLQLADFSGARLCTTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGGSFMPLQTNMLRMRKTKP*
Ga0160428_1014140Ga0160428_10141402F104247VTSTPSPLRLFSTEAAAKKAGLALADFRGERLSVVLYALLPEGEKKPTYLLSSSIRLTVAERRWVEEHQATVTKLGTFHPGRNFAPLQTNMVRQRKSTEQD*
Ga0160428_1021190Ga0160428_10211905F104247MPVSPIPLRLYPTEAAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGSNYMPLQTNMLRKKKTAE*
Ga0160428_1032097Ga0160428_10320972F104247MAKPPPPLRLYPTEVAAKKAGLQLADFSGARLCTTLYALLPAGEKKPTYLLSSTYRLTVTEKRWAEEHQATVTKLGRFPAGGNFMPLQTNMLRTRNAKP*
Ga0160428_1032410Ga0160428_10324103F104247MTIPPVPLRLYPTETAAKKAGLQLADFSGARLSTMLYALLPAGEKKPTYLLSSTYRLTVAEKRWVEEHQATVTKLGRFPAGGSFMPLQTNMLRTRNTKL*
Ga0160428_1037649Ga0160428_10376492F104247LYPTEVATKKAGLALAEFRGERLTMVLYVLLPTGEKKPTCLLSGSIRLTVAEKRWAEEHQATVTKLGTFYPGRNFAPLQMNMVR*
Ga0160428_1042525Ga0160428_10425253F104247MPSTPTPLRLFPTEAAAKKAGLALADFRGERLSMVLYALLPEGEKKPTYLLSNSIRLTVAEKRWVEEHQATVTKLGTFHPGRNFAPLQTNMVRRKKPTGED*
Ga0160428_1059414Ga0160428_10594141F059667CNAKNLFKVALFTEKPPQINSTISCPTHGIALIRLVITVAPHSDI*
Ga0160428_1125645Ga0160428_11256452F104247MPSTPSPLRLYPTEAAAKKAGLALADFRGERLSMVLYALLPEGEKKPTYLLSNSIRLTVSEKRWVEEQQATVTKLGTFHPGR
Ga0160428_1137824Ga0160428_11378241F104247MPVSPIPLRLYPTEAAARKAGLKLADYSGERLATTLYALLPAGEKKPIYLLSNTYRLTVTEKRWAEEHQATVTKLGRFPVGGNFMPLQTNMLRKKKTAE*
Ga0160428_1172807Ga0160428_11728071F104247MLSPDNTHTEKMSFTPAPLRLYPTEAAARKAGLKLADFSGERPATTLYPFLPMGTKKPTYLLSSTYRLTVTERRWVDEYQATVTKLGRFPAGGNFMPL*
Ga0160428_1188535Ga0160428_11885352F104247RLYPTEAAAKKAGLQLADFSGARLCTTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGGNFMPLQTNMLRARNAKPEHGR*
Ga0160428_1226510Ga0160428_12265102F104247SPPPLRLYPTEVAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEKRWVEEHQATVTKLGRFPAGGNFMPLQTNMLRKKKTE*
Ga0160428_1254654Ga0160428_12546543F046195MKVSRRWIEWAHGPGAEDGQPLAMSLCDLASAPGVGSIEVADPVLLAELVDVAGLYVNPCRGDALHDMGPWWMGQPRRIISAGRASLRSANSAAKSPTVAGQPE*
Ga0160428_1273508Ga0160428_12735081F104247MPISPPPLRLYPTEVAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEKRWVEEHQATVTKMGRFPAGGNFMPLQTNMLRKKKTE*
Ga0160428_1281596Ga0160428_12815961F088701KRPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEYKIDLSRLSVIELDKSKKINDVINT
Ga0160428_1283212Ga0160428_12832121F104247KPPLPLRLYPTEVAAKKAGLQLADFSGARLSTMLYALLPAGAKKPTYLLSSTYRLTVAEQRWAEEHQATVTKLGRFPVGGNFMPLQTNMLRGKKTSE*
Ga0160428_1284978Ga0160428_12849781F045048MASIPIGGHIAPNSTAGERALWKNVQKIARKNKASDTINKPTPKFNPLCTAKV*
Ga0160428_1289604Ga0160428_12896041F045048PEDNRITVFINGSSKGSIASIPIGGHIAPNSTAGERALWKNVQNIAKKNKASDTINKPTPMFSPL*
Ga0160428_1291129Ga0160428_12911291F059667GNTKCREKNLFKVALLTLNPPQTNSTISCPIQGIALIRLVITVAPHNDICP*
Ga0160428_1323007Ga0160428_13230071F059667KANAANTKGNTKCNAKNLFKVALLTEKPPQINSTTSCPTHGIALIRLVITVAPHKLI*
Ga0160428_1361616Ga0160428_13616161F104247MPSTPVPLRLFPTEAAAKKAGLALADFRGERLTLVLYALLPEGEKKPTYLLSSSIRLTVAEKRWVEEHRATVTKLGTFYPGRNFAPLQTNMVRKQKSAEQE*
Ga0160428_1370618Ga0160428_13706181F040969LQEDALPAFEAGGLHTIEAAESRVVGIPKHRTGHHLLGTAASHEEAAVIATILRLFNPN*
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