NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010993

3300010993: ECM15MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)



Overview

Basic Information
IMG/M Taxon OID3300010993 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121658 | Gp0160597 | Ga0139329
Sample NameECM15MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
Sequencing StatusPermanent Draft
Sequencing CenterMolecular Research LP (MR DNA)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size46774287
Sequencing Scaffolds25
Novel Protein Genes28
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1
Not Available11
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium SM23_301
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria marina1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCwc Coastal Marshes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.45083Long. (o)-89.75005Alt. (m)N/ADepth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F003409Metagenome / Metatranscriptome488Y
F003847Metagenome / Metatranscriptome465Y
F004454Metagenome / Metatranscriptome437Y
F013090Metagenome / Metatranscriptome274Y
F014394Metagenome / Metatranscriptome263Y
F024925Metagenome / Metatranscriptome204Y
F025653Metagenome / Metatranscriptome200Y
F036766Metagenome / Metatranscriptome169Y
F038536Metagenome165Y
F050381Metagenome / Metatranscriptome145Y
F050864Metagenome144Y
F053661Metagenome141Y
F060098Metagenome / Metatranscriptome133Y
F069741Metagenome / Metatranscriptome123Y
F070125Metagenome / Metatranscriptome123N
F070135Metagenome123Y
F076877Metagenome117Y
F077315Metagenome / Metatranscriptome117Y
F082876Metagenome / Metatranscriptome113Y
F083435Metagenome / Metatranscriptome113Y
F087210Metagenome / Metatranscriptome110Y
F088283Metagenome / Metatranscriptome109Y
F090406Metagenome108N
F093912Metagenome / Metatranscriptome106Y
F094956Metagenome / Metatranscriptome105Y
F096630Metagenome104Y
F098240Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0139329_100728All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1668Open in IMG/M
Ga0139329_101254All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana1448Open in IMG/M
Ga0139329_103180All Organisms → cellular organisms → Bacteria1108Open in IMG/M
Ga0139329_104298All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1012Open in IMG/M
Ga0139329_106200Not Available908Open in IMG/M
Ga0139329_107831All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales844Open in IMG/M
Ga0139329_109214All Organisms → cellular organisms → Bacteria804Open in IMG/M
Ga0139329_113076All Organisms → cellular organisms → Bacteria721Open in IMG/M
Ga0139329_114180All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium702Open in IMG/M
Ga0139329_117266All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon659Open in IMG/M
Ga0139329_120377All Organisms → cellular organisms → Bacteria → Proteobacteria626Open in IMG/M
Ga0139329_121061Not Available619Open in IMG/M
Ga0139329_121460All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium SM23_30615Open in IMG/M
Ga0139329_122093Not Available610Open in IMG/M
Ga0139329_123599Not Available598Open in IMG/M
Ga0139329_124298Not Available592Open in IMG/M
Ga0139329_124489Not Available591Open in IMG/M
Ga0139329_131336Not Available547Open in IMG/M
Ga0139329_132205Not Available542Open in IMG/M
Ga0139329_132555All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon541Open in IMG/M
Ga0139329_137008Not Available520Open in IMG/M
Ga0139329_139093Not Available511Open in IMG/M
Ga0139329_139514All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria marina510Open in IMG/M
Ga0139329_140572Not Available506Open in IMG/M
Ga0139329_141133All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0139329_100206Ga0139329_1002068F083435RQASSKLKKYRFGTIRSAYSKLPRLWYGWLGRGTLDDLTTEDYEQYLKDKDNKDSIQKAKRRDSKIRWVYRQERLKNRIIQVLAKFGIKINTVSKNDEGDDLYEEFKKFSKK*
Ga0139329_100584Ga0139329_1005843F087210MMRFLSGVLALASAETALAHTPDSGFLSNFGHQLTSLHHSPAAMLLGVLVLGLLLVAVRSLKTR*
Ga0139329_100728Ga0139329_1007283F001488MARLELTLNFPKSFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHLEPSEYITIKLAYGSNVSQEKK*
Ga0139329_101254Ga0139329_1012541F003847VGDEILLQKDGILRKSESPFEEAPWTITQVHTNGTVRAQRGTSSERFNIRRITPYFK*
Ga0139329_103180Ga0139329_1031802F070125VTSADDRRRWIEALHAYRDDSERLFALVASLANLLDRTLVVETMESVLGVTAVHEGDCVIFDDFAIRFGSDDRVKSVFRTIDGTGSGG*
Ga0139329_104298Ga0139329_1042982F090406MLGRKQMKGERKTFWLIIALVGLVSCSTTLTSVDEGGGNVYALPPTVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVSRKGTAPATGEPTVKRIFVKLQKDAELTGTGAAFVEFAD*
Ga0139329_106200Ga0139329_1062001F094956MLVEDILMSPSVALLAVKPREPSTITPEVTDLAAKCIPQYVLSVARTAKCPLSLERAGQYIVVSATTR*
Ga0139329_107831Ga0139329_1078314F093912TLINVNDIKGNPKFFYSAGMFNLQKTQKVRQPKAIITILKALLVKIKIFRTKPVALHFNNLFFNHQSYVFKKLKKKVFVKLVTSYNYHPHNGCRLKKKKRIKIRTRTRKL*
Ga0139329_109214Ga0139329_1092141F096630SNRRQGHGALHHFETAHYYECIGHYKKRHTYAPSQHLRPSFWNLAKHFMNPKMGIMSE*
Ga0139329_113076Ga0139329_1130761F014394MVAVLLAAAVWAYAGMLVASRPLAHLAITPTVLDVAASCAVGMID*
Ga0139329_114180Ga0139329_1141802F036766MNRTFASWITANTGAAVFLTGLLGLLPLFGLGFAFFLPGAVPALVTLARTPRDGVLVAAGASLLLALAMWSLGRPIPVGLIYSLWVLGPPLALGILLRRTGSLTLCLQVAMLAGVAMVVLLHATLGDPEQF
Ga0139329_117266Ga0139329_1172662F004454VIEIRADLHQQIRKLALLNDLKIYMVANAIIEETLSDQEKITALIKR
Ga0139329_117731Ga0139329_1177311F024925DRSKFDDIYHKAGMRISNAIKMLARNNPERVQRLAENFISKNLASLQNDAEVRFVDKEHFTIIFKRIDPLLINSQRILVEVMFKELGYEVSTTAFQNLLSFKLKQVEKPMLEPIPRKIIMQNLVDAMSASNLEEAFSLVKDQLDEMFPKDYPWTIKEVGQRLIDMYQELGIEVEIEYFEGGFTLKYKSCPYYRLVKSGQKKWLCNFRKKTIEYITAR
Ga0139329_120377Ga0139329_1203771F070135GTGNYGLNIPLDTNGQFKLQVYADGFAPITQKFDEFSANNDVRMARAVECQ*
Ga0139329_121061Ga0139329_1210611F053661VDWSLYYQTNKGRLLGIGSILIIVGLVLYFARGIETTLVLPIVGIVLLIAGVIYKPRKKKTENVTSDAP*
Ga0139329_121460Ga0139329_1214602F098240MNPDAKEALVFQDETEIHRHPTLTRMWGLRGIQPE
Ga0139329_122093Ga0139329_1220932F025653MSDPIKYFETKLKAMSLAELQAYKKRLEESIKQQISTNKPNEQIAPLILYRGILEHEIKTRTNQR*
Ga0139329_123599Ga0139329_1235991F013090SDSSRNINSSDDNINKSEDHRNRGVDFILNGGKRKQTQPFHIIFEKMVCFLNREVTIYFEFSFKSRKRKVISRRKKNVSN*
Ga0139329_124298Ga0139329_1242982F088283DTNIAGTYQPSCVAFEGNTIVLAEKKFTWDKFTDEVIVDNDGNKVDPFPGFPVRGTYVVEDDIVRLTTDVGELAARLYLVRRPGQVYLLTAYEFESWQKNGEVPKCALLLAAGG*
Ga0139329_124489Ga0139329_1244892F038536LRRRVEMLDAVCTGLHPSAVISQLSEKYDVSEKALWSDWLRREKWVPLLLELERFGDFSGMVVERLNGVQKAAWSIYLKASNDSARVGALRTVLEALEIHRDIVQTMDVLDRLDRLEEVAKEQHNSFERRGGSLH*
Ga0139329_131336Ga0139329_1313361F082876SKVLDARHRGATTEAYGAIRRKEVPSMATPQMMP*
Ga0139329_132205Ga0139329_1322051F050381LRGTTGFGSGRRNMKKLIIVLAIILLPCLALANFSIQFDNTTNKKMFYLLYWIDHNYDWPYPFNLAGGELKALETIDLNQNYKNGQYYVIWFDEGKWQNTVKMNVSADITSVKVTPIHFSQQK*
Ga0139329_132555Ga0139329_1325551F069741MENIFFDVDQLASLDKIEQARRLEEAERRIDEVQRAAADDPDSLNWVSQQRQYLVDMQHLIFEC*
Ga0139329_137008Ga0139329_1370082F003409MDPKINYLRSQIAGLDAQLAADNGKSTILQLLAKAKSLLAAREELSEPVNRANTEVLLMQVSSAVAAYNAANQIAMDSVDDILAGFDAAVVPADEPAPADEPAPAQ*
Ga0139329_139093Ga0139329_1390931F050864VLRKGKTFLCSGILILLALALFSGCSLSEKTSAEPVMPEPLEFTYSVSVSAVPIQISSGNLHWHKELPNNSYTLEDIALEIYNFGDFDIPVAQLEITVDEDVSLFNINQIIAGGAKENIALQPMMEGYDGGIHRVYVALLDNNGGVLYRNEGEDIGPLEPEPGTGSWHPM
Ga0139329_139514Ga0139329_1395141F077315VWALLLLLGLLSPSQAAEALKPDALPQAQATLERLEEQLATARTANAQELKTLRKEIATVRSSAQDCVQQAEPKIEILDSELAILQPAKPKDAQKKTAEEPQPAEQPEAPVSPAITRQLQELLSSKASLEGRMAICKLLLLKSNYLDSNVDDYLRTVQTRQLLARGPTLV
Ga0139329_140572Ga0139329_1405723F076877MKLFLERLAGGRCSFRDLGMGETAALSLSKGMRRGQVSPVNKPLKKQAREPWNERKGFMVFAYFKSECYAELRQ*
Ga0139329_141133Ga0139329_1411331F060098MERTALKRAASAAVIGVGGLLWLAAILFMVQTAQNSEQF
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