NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010411

3300010411: Aquatic microbial communities from North Sea petroleum storage tank - Cell3b



Overview

Basic Information
IMG/M Taxon OID3300010411 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111382 | Gp0155437 | Ga0136993
Sample NameAquatic microbial communities from North Sea petroleum storage tank - Cell3b
Sequencing StatusPermanent Draft
Sequencing CenterShell Corporation
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size564930946
Sequencing Scaffolds23
Novel Protein Genes23
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae2
Not Available15
All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → Caldisericia → Caldisericales → Caldisericaceae → Caldisericum → Caldisericum exile1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin0471
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Aquatic → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → oil tank → oil
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Sea
CoordinatesLat. (o)60.9Long. (o)1.8Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F026738Metagenome / Metatranscriptome197Y
F033769Metagenome / Metatranscriptome176N
F037711Metagenome / Metatranscriptome167Y
F039402Metagenome / Metatranscriptome164Y
F044014Metagenome155Y
F051532Metagenome / Metatranscriptome144Y
F056958Metagenome / Metatranscriptome137Y
F079636Metagenome115Y
F086646Metagenome / Metatranscriptome110Y
F088355Metagenome / Metatranscriptome109Y
F092080Metagenome107Y
F099327Metagenome103Y
F105430Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0136993_10000105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae37239Open in IMG/M
Ga0136993_10001825Not Available7780Open in IMG/M
Ga0136993_10002394All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → Caldisericia → Caldisericales → Caldisericaceae → Caldisericum → Caldisericum exile6444Open in IMG/M
Ga0136993_10010608Not Available2341Open in IMG/M
Ga0136993_10012026All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin0472171Open in IMG/M
Ga0136993_10012501Not Available2123Open in IMG/M
Ga0136993_10016539All Organisms → Viruses → Predicted Viral1797Open in IMG/M
Ga0136993_10019861Not Available1610Open in IMG/M
Ga0136993_10024182Not Available1429Open in IMG/M
Ga0136993_10025751Not Available1375Open in IMG/M
Ga0136993_10026241All Organisms → cellular organisms → Bacteria1359Open in IMG/M
Ga0136993_10030799Not Available1231Open in IMG/M
Ga0136993_10057280Not Available828Open in IMG/M
Ga0136993_10057355Not Available827Open in IMG/M
Ga0136993_10071181Not Available719Open in IMG/M
Ga0136993_10074082All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon701Open in IMG/M
Ga0136993_10075861Not Available690Open in IMG/M
Ga0136993_10076502Not Available686Open in IMG/M
Ga0136993_10081622Not Available657Open in IMG/M
Ga0136993_10089359Not Available618Open in IMG/M
Ga0136993_10111765Not Available525Open in IMG/M
Ga0136993_10113796All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae518Open in IMG/M
Ga0136993_10117859All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0136993_10000105Ga0136993_1000010537F037711QAGAAAPACKRTTLSQQIDAKKRTGFGAGRGQDEGRLKFLTLKNLGVID*
Ga0136993_10001825Ga0136993_100018259F086646MEFIFRIQNHYFEKGTSWTELDKIKQRSWFLSVDIEDDEVVPCYDTEHELRISLGIDFKSVKILTGKTQETQPYWEALLDMSYLNSTELREVFEDLPGESGIYMLEVWFDYGGEELNFGDDFKKLCGYRHKWDDGWICSKCGVRRADWVEADIKGRNDHDNGAK*
Ga0136993_10002394Ga0136993_100023941F037711MQAGAAAPACKRTTLSQQIDAKKQKRFGAGRGQGEGRLKLLTLKNLGAIE*
Ga0136993_10010608Ga0136993_100106081F099327IQGTSGEEISVLVDGIKLMALQNLSWKASQSKSLIRGAGYRKAHGIGRGPKEYELDFEVKELNQAVIAEGVNSPRSSEEKIKTFSVGGQEFEDLLDLRNATILIMYPPKNNAQRVIRFTGFEFTDVEGGFAFDDESVGRKLSGIAMDAEGLV*
Ga0136993_10012026Ga0136993_100120265F026738MADRATTLSGCFQKVTLGATSKILGAGTYTISGMTRRTVETSEFGVDVDIFDFVSADGGTISLGDCMYDPTNPEQNTLRDCVENKVKLINSVTSGIRFWINSTSYLTIGTSGDILMTKAGDVKADRNGLAKTSFEGHVSGAFMYIV*
Ga0136993_10012501Ga0136993_100125013F044014MSDDYKPRFSFEISFDQKERADRLITNYGLRKAIFSHILDDVLDLIEDHGGMVVGILMSDKCKPRDILPTMKEAETAAEKVRE*
Ga0136993_10016539Ga0136993_100165393F026738MADRATTLSGRFQKVTLGGSDSKVLGAGTYTISGATRRTADASEFGVDVDIFEFGSADGGTITLSDVSFDPTDPAQNTLRTNVENAIKLINSSTSGIRFWINSTSFYTIGTSGHILLTKGGAVRADRNGLAKTDYEGQISGAFMYLAESIV*
Ga0136993_10019861Ga0136993_100198612F039402MLTDYSSIEKEIADAPEPKILPKGSEVKARIIAVREGVSDKNDAQWYQPVFDIPSEPLALEFNDFFWDLNDRNKLDEKSAARAVRKFKLFAEAFGIDYAKPFDWVDDLPGKEGWMILGVRKSEEFGDSNTVGKYIAGK*
Ga0136993_10024182Ga0136993_100241824F000388MKVIKVTKEYFQTEDEKVYFFEPLEKEISVDDMQKIVDANEKLVKELKDND*
Ga0136993_10025751Ga0136993_100257513F086646MVFIFSIKNHYFEKGTPWVELEKIKQRCWFISVDIEDDETVPCYDTEHELRISKGIAFKSVQILTIKTQETHPYWEAFLDMSYLYSTELRDVTFKDLPSESGIYRLNIWFDHDGEGLNFGDDFKKLCEYRHKWDDGWVCSKCGVRKADWVVADRRHT*
Ga0136993_10026241Ga0136993_100262416F051532DIMKILTCYSARFYGRRGGRKKKNVAENEPVESNGI*
Ga0136993_10030799Ga0136993_100307992F033769MGIKTATLAASTVGIAANREYLRLTNESLVTRCRAGDSGITAEAGVIIEPGQTVEFRSLPSENKEIYVLSEGAAVELAYYEVILA*
Ga0136993_10057280Ga0136993_100572801F039402YSDLEKEIQDAPEPKTLPRGSEVKARIINVREGVSDKNDCQWYQPVFDVPADPLVNEFNDFFWDLADRDKLDPKQAARSMTKFKNFAAAMGLDYSRPFDWTEDLIGLEGWVILGVKKSDEYGDQNTISKYVARK*
Ga0136993_10057355Ga0136993_100573552F000388MKVIKVTKEYFETEDEKVYFFEPLEKEISVEDMQKIVDVNEKLVKELKDADR*
Ga0136993_10071181Ga0136993_100711811F000388MKVIKVTKEYFQTEDEKIYFFEPLEKEISVEDMQKIVDANEKLVKELKDETNTISK*
Ga0136993_10074082Ga0136993_100740822F051532KEKKYEEELAEDIMKILTCYSARFYGRRGGRKKKNTAENEPDESNGI*
Ga0136993_10075861Ga0136993_100758612F033769MSTVNCGIKTATNTPTTVGVATGRKYLRLTNESLDMRCRAGDASISNEAGIIIEPGQTVEFRPLPSDNTDIYVMSEGKAVTLAFYEVIA*
Ga0136993_10076502Ga0136993_100765023F044014MNDEYKPRFSFEITDEQKERADRLITTYGLRKAMFGQVLDDILDLIDEYGGVVIGIIASSKLKPREIIPSLKKAEEVGKHGNNR*
Ga0136993_10081622Ga0136993_100816222F092080MQDKRITIRIPFEIWKGLRELQTMGKISSIQQAAVTGMDNLIQSLQADLGQNQREAATKRVLNILVEEKPFGSWEDVHRKRTDTDACRS*
Ga0136993_10089359Ga0136993_100893592F056958MIMAEEVNIMTDAKPTHLTLADGKEYKLPPIDMTTLASIETTMGFGLGRLQYKLENETMTTMRSLIYALLKEEQPELDINTVGHLITLKEMTAVSTTISEIMALT*
Ga0136993_10111765Ga0136993_101117652F079636YNINGNSSAYGKFIADASEEYNAYTIENANVTSADGTISTLGETQILAFDLVTDNSLVMPIRKEFEAVEDPTLLRRQKAGFFGWQECGFACLDSRMVGMGIIDRSL*
Ga0136993_10113796Ga0136993_101137962F088355MKNKLSIFAGEKGQLILAILTIALFVLAAGAPNALGSVGR*
Ga0136993_10117859Ga0136993_101178591F105430MTSAASQQFFDTFPPDIARGILEGRPLRIHAVRVSLVREAGSTGFAIDTL
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