Sample 3300010317

Overview

Basic Information
IMG/M Taxon OID	3300010317 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0138766 \| Ga0116197
Sample Name	Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	405129816
Sequencing Scaffolds	20
Novel Protein Genes	20
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Oklahoma, Zodletone Spring
Coordinates	Lat. (^o)	34.9956	Long. (^o)	-98.6889	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F018530	Metagenome / Metatranscriptome	234	Y
F024682	Metagenome / Metatranscriptome	205	Y
F028081	Metagenome / Metatranscriptome	192	Y
F030484	Metagenome / Metatranscriptome	185	Y
F036302	Metagenome	170	Y
F038920	Metagenome / Metatranscriptome	165	Y
F043801	Metagenome / Metatranscriptome	155	Y
F055829	Metagenome / Metatranscriptome	138	Y
F058721	Metagenome / Metatranscriptome	134	Y
F060099	Metagenome	133	Y
F062884	Metagenome / Metatranscriptome	130	Y
F070129	Metagenome	123	N
F073077	Metagenome	120	Y
F074887	Metagenome	119	Y
F082709	Metagenome / Metatranscriptome	113	Y
F105450	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F004454

Metagenome / Metatranscriptome

437

F018530

Metagenome / Metatranscriptome

234

F024682

Metagenome / Metatranscriptome

205

F028081

Metagenome / Metatranscriptome

192

F030484

Metagenome / Metatranscriptome

185

F036302

Metagenome

170

F038920

Metagenome / Metatranscriptome

165

F043801

Metagenome / Metatranscriptome

155

F055829

Metagenome / Metatranscriptome

138

F058721

Metagenome / Metatranscriptome

134

F060099

Metagenome

133

F062884

Metagenome / Metatranscriptome

130

F070129

Metagenome

123

F073077

Metagenome

120

F074887

Metagenome

119

F082709

Metagenome / Metatranscriptome

113

F105450

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0116197_1003893	Not Available	3078	Open in IMG/M
Ga0116197_1011708	Not Available	1874	Open in IMG/M
Ga0116197_1029561	Not Available	1233	Open in IMG/M
Ga0116197_1032455	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1181	Open in IMG/M
Ga0116197_1034049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1155	Open in IMG/M
Ga0116197_1037334	All Organisms → cellular organisms → Archaea	1108	Open in IMG/M
Ga0116197_1052814	All Organisms → cellular organisms → Archaea → TACK group	943	Open in IMG/M
Ga0116197_1068514	All Organisms → cellular organisms → Archaea	838	Open in IMG/M
Ga0116197_1075647	Not Available	802	Open in IMG/M
Ga0116197_1077230	Not Available	795	Open in IMG/M
Ga0116197_1081744	Not Available	774	Open in IMG/M
Ga0116197_1084041	Not Available	765	Open in IMG/M
Ga0116197_1090390	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	740	Open in IMG/M
Ga0116197_1098339	Not Available	713	Open in IMG/M
Ga0116197_1098508	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	712	Open in IMG/M
Ga0116197_1099847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	708	Open in IMG/M
Ga0116197_1118859	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	655	Open in IMG/M
Ga0116197_1121557	Not Available	649	Open in IMG/M
Ga0116197_1125879	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	639	Open in IMG/M
Ga0116197_1160840	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	574	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0116197_1003893

Not Available

3078

Open in IMG/M

Ga0116197_1011708

Not Available

1874

Open in IMG/M

Ga0116197_1029561

Not Available

1233

Open in IMG/M

Ga0116197_1032455

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

1181

Open in IMG/M

Ga0116197_1034049

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

1155

Open in IMG/M

Ga0116197_1037334

All Organisms → cellular organisms → Archaea

1108

Open in IMG/M

Ga0116197_1052814

All Organisms → cellular organisms → Archaea → TACK group

943

Open in IMG/M

Ga0116197_1068514

All Organisms → cellular organisms → Archaea

838

Open in IMG/M

Ga0116197_1075647

Not Available

802

Open in IMG/M

Ga0116197_1077230

Not Available

795

Open in IMG/M

Ga0116197_1081744

Not Available

774

Open in IMG/M

Ga0116197_1084041

Not Available

765

Open in IMG/M

Ga0116197_1090390

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

740

Open in IMG/M

Ga0116197_1098339

Not Available

713

Open in IMG/M

Ga0116197_1098508

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

712

Open in IMG/M

Ga0116197_1099847

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

708

Open in IMG/M

Ga0116197_1118859

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

655

Open in IMG/M

Ga0116197_1121557

Not Available

649

Open in IMG/M

Ga0116197_1125879

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

639

Open in IMG/M

Ga0116197_1160840

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium

574

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0116197_1003893	Ga0116197_10038934	F074887	MHYEVVWPSGDLLGIFPSYPAALARARVWWDRGYACRIRKCMASLAPSALTMAAAVHQLRRGDR*
Ga0116197_1011708	Ga0116197_10117086	F030484	IDEAISKMSQIKKAAGDFKENVAGLVKDANIESTDWRFNVESHKEGVTIDIAIKLLITKKEQDLETSN*
Ga0116197_1029561	Ga0116197_10295611	F062884	MERDGREVDALSIFLMGLGVLLLVLGPCAGLYGIAMGFVALVGCWVVAITLRVFYFGGSRDDRRSRYV*
Ga0116197_1032455	Ga0116197_10324551	F055829	FWEEVQEAIDLVEKETGKKLPLSIIYTTEGELQGAHPDFAEAALRISRNEIERIGAPEHAKIGFILGEHGYPPGNGDEDVIGINQERVRRNMRRVYDTALPGLRKGITEYQLGMNEFNNHPDSWQPSSMERMVDYLHRGFDVIIFQPYYFTYETIDLFEHLRHWAFEVDGIDYHHEFHGGHEILPDYRSDFDFRGTRIIITGSLLGRYEKDGGRPSVQEAYKLFKGGVADTIARRLDSL*
Ga0116197_1034049	Ga0116197_10340492	F018530	VAVLEGIPGVSDTTKHFVQAVRLYMRDFPELNRLIAGEETSDRQIAWSVLDALSDFNSTPHFTNLTLEQLFQRNMQWLMLRLTVIAVIESVGLLQTRNHINYSTGGINVGINDKTPMLMNWLQYFRGITEQRKQQIKVALNIESILGPSNVGIHSEYWAVNATYLSY*
Ga0116197_1037334	Ga0116197_10373341	F058721	MRLVFQNERFIGYRCLMKPNSHNFRYDIENKKWEKLIIKTKPLLKYKEAPYEEEIDEPIAAEPI*
Ga0116197_1052814	Ga0116197_10528142	F030484	MVDKKEEAIDEAISKMSQIKKAAGDFRENVAGLVKDVNIESTDWRFNVESHKEGVTIDIAIKLLITKKEDLETSN*
Ga0116197_1068514	Ga0116197_10685141	F073077	FIRDNKEIFCIMEKPLKILFKQIPLNYSWIPFPQKLTVNPMILGRTVVVNDERFSEYMKHVDKWENELFWTDTANCSFEPIAVNKSEKPIAATVTINDRGRIHFLPRTTRISRAKSIRLLMNLSSRTEAAVEPSWLSSVEIPQSNRPQDQWNSSVPPEEYRKLFSADHKNVTKAAQIMLEDMGIQTIQNPEFGLLGLKENIVVKVASTKGKIEVQNVDVNHLARFIEHQRRNEKVVFIANTYSGLHPSQRADKEHLDLSVKLFFETSNVAFLTTLSLYN
Ga0116197_1075647	Ga0116197_10756471	F105450	VRKAVKTVSLEDRFKKFASEQEAPVGQRHGGYEKNLEYLNKVDSMVSGILETFCQAVGWGLKRNDCCDRDKGAVSCNYILEHRDFWREGFVAVDVEVTWGTYSDPLEAVTVYHGEVGGTGDHVRVYSSRIVIPFDKLTEERLAAALEQQSGNVIRRISYLQKPQ*
Ga0116197_1077230	Ga0116197_10772302	F024682	LSAEDELISKLQIEIGKKVPAMFNRMAKNMLANNKEVIINWLKDNKELVKEVIES*
Ga0116197_1081744	Ga0116197_10817442	F038920	VLTEILTDQQLIDLYTTDGYLVAVDYTKNEIKLHTVDCMLADPISSIGVKPTKSRENNTGEFWFSKNKDEANKKAEQIAKTKGYTYIICPICNR*
Ga0116197_1084041	Ga0116197_10840411	F105450	LFDLTWARKGVKTVTLEDRFKSFASEQKAPPDQQHDPYKRDVESMNKVDSIVSKVLEAFCHAVGWGLKRSDYCDRDKGAVSCNYILEHRDFCREGYLTVDVEVTRGYRSDPVEAVTLYQGAIMGATEHARDFASKVVIPFSQLREEGLATALEQQSRNLIRRIIRLEKPKPPISVERERPQKTVTLEDRFRRFVEAEEKAEWDRQHQ
Ga0116197_1090390	Ga0116197_10903902	F028081	DEKQALQRLQKIRKENDESYLKAKAFLDGFRARGQLSQKDNEFLFLMEFVIKGFKNHGNDIITAFENQVRFTEALNNFQTKINDLEKEIRQLRLTLDKMYRDK*
Ga0116197_1098339	Ga0116197_10983391	F070129	MQYSATTEALLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS*
Ga0116197_1098508	Ga0116197_10985082	F024682	MTPEDELISKLKAEIGKSLPPMFSGMAENMLENNKAVIIKWLVDNKDLVKQIIDK*
Ga0116197_1099847	Ga0116197_10998471	F060099	MKALRGAEEALEYLIKGVKGLEEPPTLAGRFDELELYLKRARMALKFV*
Ga0116197_1118859	Ga0116197_11188592	F004454	VDKHRRTVVEVRADLHQQIRKLALLNDLRIYVLANAIIEETLRDEEKTQTLIKRLSL*
Ga0116197_1121557	Ga0116197_11215571	F043801	MAKKLTGICPCGFSFTTPHGEDDAVAVMRYHVKLLHEKEYPNGQTRAEVMEHIKEVE*
Ga0116197_1125879	Ga0116197_11258791	F082709	VNNIPMCADAEGNNGDQRFNGIAYNSKRNEFLASWTDSREGMHNVGIVGRIVKADGTMPAKDFILVDAPGAQMISHSAYLPQQDKYFMAFEYSRNELDKFYFKDINARLDIGARWLGANGQPEGDLIDICSSEGNQRFVRFAHNAAGDTFLLVWQDDFPGVSDSVEGHIMSAGGTIMGALYKK*
Ga0116197_1160840	Ga0116197_11608402	F036302	YLTARQYGEVVLPDACTGQGPGTPRERGHKAVTVQGGYGALFAVMVQILLSITRVAVQG*

Scaffold ID

Protein ID

Family

Sequence

Ga0116197_1003893

Ga0116197_10038934

F074887

MHYEVVWPSGDLLGIFPSYPAALARARVWWDRGYACRIRKCMASLAPSALTMAAAVHQLRRGDR*

Ga0116197_1011708

Ga0116197_10117086

F030484

IDEAISKMSQIKKAAGDFKENVAGLVKDANIESTDWRFNVESHKEGVTIDIAIKLLITKKEQDLETSN*

Ga0116197_1029561

Ga0116197_10295611

F062884

MERDGREVDALSIFLMGLGVLLLVLGPCAGLYGIAMGFVALVGCWVVAITLRVFYFGGSRDDRRSRYV*

Ga0116197_1032455

Ga0116197_10324551

F055829

FWEEVQEAIDLVEKETGKKLPLSIIYTTEGELQGAHPDFAEAALRISRNEIERIGAPEHAKIGFILGEHGYPPGNGDEDVIGINQERVRRNMRRVYDTALPGLRKGITEYQLGMNEFNNHPDSWQPSSMERMVDYLHRGFDVIIFQPYYFTYETIDLFEHLRHWAFEVDGIDYHHEFHGGHEILPDYRSDFDFRGTRIIITGSLLGRYEKDGGRPSVQEAYKLFKGGVADTIARRLDSL*

Ga0116197_1034049

Ga0116197_10340492

F018530

VAVLEGIPGVSDTTKHFVQAVRLYMRDFPELNRLIAGEETSDRQIAWSVLDALSDFNSTPHFTNLTLEQLFQRNMQWLMLRLTVIAVIESVGLLQTRNHINYSTGGINVGINDKTPMLMNWLQYFRGITEQRKQQIKVALNIESILGPSNVGIHSEYWAVNATYLSY*

Ga0116197_1037334

Ga0116197_10373341

F058721

MRLVFQNERFIGYRCLMKPNSHNFRYDIENKKWEKLIIKTKPLLKYKEAPYEEEIDEPIAAEPI*

Ga0116197_1052814

Ga0116197_10528142

F030484

MVDKKEEAIDEAISKMSQIKKAAGDFRENVAGLVKDVNIESTDWRFNVESHKEGVTIDIAIKLLITKKEDLETSN*

Ga0116197_1068514

Ga0116197_10685141

F073077

FIRDNKEIFCIMEKPLKILFKQIPLNYSWIPFPQKLTVNPMILGRTVVVNDERFSEYMKHVDKWENELFWTDTANCSFEPIAVNKSEKPIAATVTINDRGRIHFLPRTTRISRAKSIRLLMNLSSRTEAAVEPSWLSSVEIPQSNRPQDQWNSSVPPEEYRKLFSADHKNVTKAAQIMLEDMGIQTIQNPEFGLLGLKENIVVKVASTKGKIEVQNVDVNHLARFIEHQRRNEKVVFIANTYSGLHPSQRADKEHLDLSVKLFFETSNVAFLTTLSLYN

Ga0116197_1075647

Ga0116197_10756471

F105450

VRKAVKTVSLEDRFKKFASEQEAPVGQRHGGYEKNLEYLNKVDSMVSGILETFCQAVGWGLKRNDCCDRDKGAVSCNYILEHRDFWREGFVAVDVEVTWGTYSDPLEAVTVYHGEVGGTGDHVRVYSSRIVIPFDKLTEERLAAALEQQSGNVIRRISYLQKPQ*

Ga0116197_1077230

Ga0116197_10772302

F024682

LSAEDELISKLQIEIGKKVPAMFNRMAKNMLANNKEVIINWLKDNKELVKEVIES*

Ga0116197_1081744

Ga0116197_10817442

F038920

VLTEILTDQQLIDLYTTDGYLVAVDYTKNEIKLHTVDCMLADPISSIGVKPTKSRENNTGEFWFSKNKDEANKKAEQIAKTKGYTYIICPICNR*

Ga0116197_1084041

Ga0116197_10840411

F105450

LFDLTWARKGVKTVTLEDRFKSFASEQKAPPDQQHDPYKRDVESMNKVDSIVSKVLEAFCHAVGWGLKRSDYCDRDKGAVSCNYILEHRDFCREGYLTVDVEVTRGYRSDPVEAVTLYQGAIMGATEHARDFASKVVIPFSQLREEGLATALEQQSRNLIRRIIRLEKPKPPISVERERPQKTVTLEDRFRRFVEAEEKAEWDRQHQ

Ga0116197_1090390

Ga0116197_10903902

F028081

DEKQALQRLQKIRKENDESYLKAKAFLDGFRARGQLSQKDNEFLFLMEFVIKGFKNHGNDIITAFENQVRFTEALNNFQTKINDLEKEIRQLRLTLDKMYRDK*

Ga0116197_1098339

Ga0116197_10983391

F070129

MQYSATTEALLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS*

Ga0116197_1098508

Ga0116197_10985082

F024682

MTPEDELISKLKAEIGKSLPPMFSGMAENMLENNKAVIIKWLVDNKDLVKQIIDK*

Ga0116197_1099847

Ga0116197_10998471

F060099

MKALRGAEEALEYLIKGVKGLEEPPTLAGRFDELELYLKRARMALKFV*

Ga0116197_1118859

Ga0116197_11188592

F004454

VDKHRRTVVEVRADLHQQIRKLALLNDLRIYVLANAIIEETLRDEEKTQTLIKRLSL*

Ga0116197_1121557

Ga0116197_11215571

F043801

MAKKLTGICPCGFSFTTPHGEDDAVAVMRYHVKLLHEKEYPNGQTRAEVMEHIKEVE*

Ga0116197_1125879

Ga0116197_11258791

F082709

VNNIPMCADAEGNNGDQRFNGIAYNSKRNEFLASWTDSREGMHNVGIVGRIVKADGTMPAKDFILVDAPGAQMISHSAYLPQQDKYFMAFEYSRNELDKFYFKDINARLDIGARWLGANGQPEGDLIDICSSEGNQRFVRFAHNAAGDTFLLVWQDDFPGVSDSVEGHIMSAGGTIMGALYKK*

Ga0116197_1160840

Ga0116197_11608402

F036302

YLTARQYGEVVLPDACTGQGPGTPRERGHKAVTVQGGYGALFAVMVQILLSITRVAVQG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010317: Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences