Sample 3300010305

3300010305: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_RNA2 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300010305 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114433 \| Gp0147108 \| Ga0129320
Sample Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_RNA2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	31119070
Sequencing Scaffolds	43
Novel Protein Genes	46
Associated Families	38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Eukaryota	3
All Organisms → Viruses	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Camelineae → Arabidopsis → Arabidopsis thaliana	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	4
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Solspiviridae	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	2
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → estuary → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2454	Long. (^o)	-76.028	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F000817	Metagenome / Metatranscriptome	879	Y
F001024	Metagenome / Metatranscriptome	803	Y
F002557	Metagenome / Metatranscriptome	548	Y
F002779	Metagenome / Metatranscriptome	530	Y
F004178	Metagenome / Metatranscriptome	449	Y
F004905	Metagenome / Metatranscriptome	419	Y
F005001	Metagenome / Metatranscriptome	415	Y
F006508	Metagenome / Metatranscriptome	371	Y
F014152	Metatranscriptome	265	N
F014742	Metagenome / Metatranscriptome	260	Y
F014854	Metagenome / Metatranscriptome	259	Y
F015609	Metagenome / Metatranscriptome	253	Y
F016159	Metagenome / Metatranscriptome	249	Y
F017318	Metagenome / Metatranscriptome	241	Y
F018020	Metagenome / Metatranscriptome	237	Y
F018726	Metagenome / Metatranscriptome	233	Y
F020793	Metagenome / Metatranscriptome	222	Y
F026284	Metagenome / Metatranscriptome	198	Y
F035116	Metagenome / Metatranscriptome	173	Y
F037503	Metagenome / Metatranscriptome	168	Y
F043967	Metagenome / Metatranscriptome	155	Y
F044532	Metagenome / Metatranscriptome	154	Y
F046210	Metagenome / Metatranscriptome	151	N
F062795	Metagenome / Metatranscriptome	130	Y
F064770	Metagenome / Metatranscriptome	128	Y
F073595	Metagenome / Metatranscriptome	120	Y
F073598	Metagenome / Metatranscriptome	120	N
F080094	Metagenome / Metatranscriptome	115	Y
F081412	Metagenome / Metatranscriptome	114	Y
F081898	Metagenome / Metatranscriptome	114	Y
F082737	Metagenome / Metatranscriptome	113	Y
F085004	Metagenome / Metatranscriptome	111	Y
F092118	Metagenome / Metatranscriptome	107	Y
F095528	Metagenome / Metatranscriptome	105	N
F095529	Metagenome / Metatranscriptome	105	Y
F103327	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0129320_101763	Not Available	555	Open in IMG/M
Ga0129320_102116	All Organisms → cellular organisms → Eukaryota	688	Open in IMG/M
Ga0129320_103200	All Organisms → Viruses	855	Open in IMG/M
Ga0129320_103230	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	596	Open in IMG/M
Ga0129320_107964	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Camelineae → Arabidopsis → Arabidopsis thaliana	1159	Open in IMG/M
Ga0129320_110399	Not Available	511	Open in IMG/M
Ga0129320_110946	All Organisms → cellular organisms → Eukaryota	667	Open in IMG/M
Ga0129320_111739	Not Available	563	Open in IMG/M
Ga0129320_114497	Not Available	540	Open in IMG/M
Ga0129320_116496	Not Available	538	Open in IMG/M
Ga0129320_117728	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	2465	Open in IMG/M
Ga0129320_120319	Not Available	970	Open in IMG/M
Ga0129320_120712	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	543	Open in IMG/M
Ga0129320_123654	Not Available	709	Open in IMG/M
Ga0129320_124021	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Solspiviridae	2361	Open in IMG/M
Ga0129320_124663	Not Available	519	Open in IMG/M
Ga0129320_125098	Not Available	785	Open in IMG/M
Ga0129320_126736	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	1277	Open in IMG/M
Ga0129320_130280	All Organisms → cellular organisms → Eukaryota → Sar	584	Open in IMG/M
Ga0129320_130736	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	527	Open in IMG/M
Ga0129320_131355	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	682	Open in IMG/M
Ga0129320_132169	Not Available	862	Open in IMG/M
Ga0129320_133308	Not Available	510	Open in IMG/M
Ga0129320_135696	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Camelineae → Arabidopsis → Arabidopsis thaliana	746	Open in IMG/M
Ga0129320_136669	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	748	Open in IMG/M
Ga0129320_138308	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	581	Open in IMG/M
Ga0129320_138624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	534	Open in IMG/M
Ga0129320_140072	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	650	Open in IMG/M
Ga0129320_140135	Not Available	573	Open in IMG/M
Ga0129320_142493	Not Available	547	Open in IMG/M
Ga0129320_142681	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	554	Open in IMG/M
Ga0129320_144433	All Organisms → Viruses → Predicted Viral	2539	Open in IMG/M
Ga0129320_145039	Not Available	608	Open in IMG/M
Ga0129320_146827	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1269	Open in IMG/M
Ga0129320_147039	Not Available	773	Open in IMG/M
Ga0129320_148449	Not Available	1472	Open in IMG/M
Ga0129320_153094	All Organisms → cellular organisms → Eukaryota	508	Open in IMG/M
Ga0129320_153508	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	664	Open in IMG/M
Ga0129320_153689	Not Available	518	Open in IMG/M
Ga0129320_154200	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	671	Open in IMG/M
Ga0129320_158634	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	755	Open in IMG/M
Ga0129320_158732	Not Available	592	Open in IMG/M
Ga0129320_159151	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129320_101763	Ga0129320_1017631	F002557	VLIHSSNHYPLGNCDSPRLETSLNYLTRLGAVSNRTSSPSPFFAFTDSARTLPEELVNPASNF
Ga0129320_102116	Ga0129320_1021162	F080094	MKKQTQKDKKIRKFFNQQELNHIILKSIVKNENLSLVLK*
Ga0129320_103200	Ga0129320_1032001	F017318	MFSPLQARPLKFERTVEGLYDISCDGINPSVGTWNFSLNDLPSYAEFTVLFDMYKIDRIEIEWYPEYTVLSDGGVTSPAVAVQFNSAIDPVGNTVTAVTDVLQYKTLKATGISKNHKRSFTPAYLMDGIVPCACYISCASPSSNLWGIVYGISPTGTAMLFKSRAKFFMSFVQSR*
Ga0129320_103230	Ga0129320_1032302	F014742	MKNSKFMTLRPNFIPRGCYKEIRSYQLCVAKSSADACFADKISIMEVCPDHVLELLREKKKWYLRAEMIDNDTYKRAMTVSDFNKHRSVSDLQLKTW
Ga0129320_107964	Ga0129320_1079641	F073598	MGTGGYILYQTQGNSENIKLAIKESVPGCKGPGTKGKQPRLLNKVLKKKLSEKKDYLIMTAKRWAWKQPSLRESVIAHWSNLLNNF*
Ga0129320_110399	Ga0129320_1103991	F000817	RRWPVVVEKLPPGVSGIIPGNWGKAKSGWLAWPLGRRIARFGG*
Ga0129320_110946	Ga0129320_1109461	F014152	QNMVKVYGSTSGSAEERRPQNIARQISIVLAICALALTVCVALVSKAELKAARPVALYGLGSGEEQEADNSIVTTFETFDGQDDYMKELLGDEYYVDLFDEIAASEPITEAVDEVKVAIDEAKNEHAILQTFAEGADAPLG*
Ga0129320_111739	Ga0129320_1117391	F085004	MSLLANATIVPSGGTSLAVSDDGVSIPNGVHLMVPADADYQTRRQVTVKYRQPSIDPKTGVYSKDKKSICLALPVVLASGQVVFNTIRVEREVHPSLTAAAALELGMLGAQLLVDSEAAAFWANGSLS*
Ga0129320_114497	Ga0129320_1144971	F005001	HGIEHCEQKRRAIRRLAPRMLDFSAFGSMLPGSPLAAFCPEPVARNGLLLACNGCRLSAASIPGSKLPACYFASLPDSSRARSALRLHYRQPGCAGCGRFTAWGPLHFHYPVWPAAPAASTPLRDFYVPRDQSVQQRLLPAGPPGETARFPLAPRRPF*
Ga0129320_116496	Ga0129320_1164961	F103327	WKQDQAELAKAVPSHAIILSEVDKKHAGLKHTTINDLFHQEGSLTGNTFRTNFSVVKVEGPTAELVQSYNKTTKKATSAKGTKGGDLIWRVSLLVKDASTASNSNKYRINVNSHEGLGAEFFGKAANLHSEAAALKRVQHQVDNLTKFNTFVDAVVEKRGGQYLIKDTKLRA*
Ga0129320_117728	Ga0129320_1177281	F095529	QLSLPHHQTKSSRMEASTVANLFPKKPARGPKAEGKAMKLFTNFFSIDFDSKDVAGVNKYTVKFEPEIPDNSRELRKKVLKLCRDQIKEKLEFFIDWGLCIFSLKKVAELPQYAGELDGVKYAVSIEWV*
Ga0129320_120319	Ga0129320_1203192	F085004	MGLKTMSLLAAATVSATGGTALAFSDDGVSISNGLHLIVPADADYQTRRQVTVKYRQPSIDPKTGVYSKDKKSICLALPVVLPTGQVVFNTIRIEREVHPSLSAASAAELCNLGAQMLVDADVVSFWANGSLS*
Ga0129320_120712	Ga0129320_1207121	F004905	MVIRELPVKNFYVRCWLAYGWIIYFVVRGLGRGLKSNRPIVMYNHALHAKTLANYPDLFFWNVTRVLPKNPPVPDAHREWQTRQKPVFHMAHKNVYRYRFRQPRYVAWDGSQNQPVMPYMNDNGTDVINGTFKRNCNSTPQ
Ga0129320_123654	Ga0129320_1236541	F014854	LRWTAVDERKSLVVSRMIPGNWGKVESGWLARPLLNRIARFGGGGRIHQFLWSRSHATGNANRSLAARSDEKPLRVESSSPSRFQAWANRSYPEGKWLLLCIGTGRVTLAESTNRLKPPNESHRKVDKRSARTGEITQARQAA*
Ga0129320_124021	Ga0129320_1240212	F085004	MEDYPMSLKTMTLLTGATVAASGGTPVVLSDDGVTIPNGVHLIFPSDPDYQTRRQITVKYRQPTIDAKTSVYSKDKKSMCLALPIVLADGRVVFNTIRVEREVHPSLTAAQALELSLLGAQMLIDSEAAAFWANGSLS*
Ga0129320_124663	Ga0129320_1246631	F004178	MRSKTSHAAKSGVGEHTARESESAQRMRWERVRGEH
Ga0129320_125098	Ga0129320_1250981	F035116	MSVSWFGPQAGGATISRVGPRGLTQEFSDRKALDGPATRPTTPLAVENSVGKPAAPEAPNVGIGKESL
Ga0129320_126736	Ga0129320_1267362	F018726	MLPDPVTVAAASPTPSLVLTIVKQDGYGSERVDSGGNGYTVIIQHQKQKGGGDRHYVQMTQVVNAVDPYSGATRKQTASVSFTIVRPSFGFTDAAMVALAKALTDFRDDSEVT
Ga0129320_130280	Ga0129320_1302802	F092118	MKLTFFSFFLNSEEAEAFLEINSNFLETNVVNILLLVGLLIYAYKTSFSVSLEDRKKGIVQTIENAQKDVTNATNYYFLAEKGFTQSLFWLQSWKTLYEKDK
Ga0129320_130736	Ga0129320_1307361	F020793	KSSAEACFSDKISIMEVCPDHVLEGLREKKKWYLRAEMIDNDTYKRAMTVSDYNRGRSVNDLQLKTWEHGKTANMRSDSMWQDDRYNPIEYSHPHRNDNVNFPQQEFKDFFGGTEGTAAKEEYEKHRLNLSDGTSKAMHEHASNKRMAKLRDAVAEVDNLNHDKKGHH*
Ga0129320_131355	Ga0129320_1313551	F014742	MKESKYMTLRPNYIPRGCYKEIRKYQICAAKSSAEHCFSDKISIMEVCPDHVLEGLREKKKWYLRAEMIDNDTYKRAMTVSSFNKGRSVTDLKLKTWDWGKTANLRSDSFW*
Ga0129320_131355	Ga0129320_1313552	F044532	INFYSSNFPEYYWQKPHYNWGNTVIHSDLYKKLNPIRARYDYKPNDYTQMPFYLGVVPQFFWLYGNLDYSFNKYHRHY*
Ga0129320_132169	Ga0129320_1321692	F085004	MEVTPMGLKTMSLLAGATIAATGGTALGFADDGVSIPNGLHLIVPSDVDYMTRRQATAKYRPASIDPKTGVYSKDKKSISLAQPVVLENGSVVFCTIRIEREMHPSLTAAQALEMNNLGAQLLTDPDAANFWANGSLS*
Ga0129320_133308	Ga0129320_1333081	F073595	LNREGHAASAGPVKTFQKVGDVKNDTADLWTKGNLRVKRR
Ga0129320_135696	Ga0129320_1356961	F073598	MGTGGILSYQTQGNSENIIFAIKESVPGCKGPGTKGKQPRSIIKVLKKKLSEKKAYLIVTAKRWAWKQPSLRESVIAHWSN*
Ga0129320_136669	Ga0129320_1366691	F026284	GNYRKGWHQTQAEQDAHDDLQRRKVNPQTSDYVANNELICFGLSEHNLEERMPTWTDKAQHDFAVLRSWFPKRKMEEVTRPVYRSDFNWTNYASRAQLRCVLGLMVIRELPVKNFYVRCWLAYGWIIYFVVRGLGRGLKSNRPIVMYNHALHAKTLANYPDLFFWNVTRVLPKNPPVPDAHREWQTRQKPVFHMAHKNVYRYRFRQPRYVAWDGSQNQPVMPYMNDNGTDVINGTFKRNCNSTPQLK*
Ga0129320_138308	Ga0129320_1383081	F016159	PNYESLSRSRRGLIFLFAYIGTITSISRLGGWSHNEWIRGMIFHHEFLLAFYLGYIETRHFTWLPGPKFTVFYNVYSRYETQQLCSQWADVVEEQQMTHLRFTKEQLEYVRLNKEYDFIKKRALVNFLTNSRTELENHFHSRAQNMLTSIERYE*
Ga0129320_138624	Ga0129320_1386241	F062795	DKVDQNNFIGFVNRLKVIDTFIYFKIKDGVIQASAYLPQRDAVKHHRVPVGQVFQLEEGAISTTKELKIAFFDASRLTDAFKQFEFGNVQAEIEFVENDEDFVATEFRIFNNELEIKLACSEPSLGYKDLTDSQIQAIFNIDAANYVFDMDYTATSKVRSLFGLDKEETFTITTNKD
Ga0129320_140072	Ga0129320_1400721	F015609	PVKLEKSYLDKFVNGYFLGKRQIGRPIKYNIRTKDRQGWVELVFNPRTRVEQYLSNSLRFIHPYLFHITYKFHVEKAREAGMRVEDVYANKFHKEPYIMMHLYAQYFHPSTLLERVRDVRFYRNPRTMFKGFRVPDWATAKEQHGWEFDAYSR*
Ga0129320_140135	Ga0129320_1401351	F082737	MPGLSPSHPARRTSLRFAPRLRNFSVGASLLSGTPASLPVRSQNLEADFHSPPTTSLSPDCRGGVRVPALPLQLCGTISVGPVRFDLHPRPVSRTAWGLLQSKPVAFRSCATPACLVESSLPFRVYTLPDQSTRSRWPTGNLLPGTPDLPSLPTGGRIRYQHQRIIVPAPLRLFQLAV
Ga0129320_142493	Ga0129320_1424932	F081898	RHRLEVESLFGGSSKAFGGPRFVTEPGLPSREVAAPCRVFSPEMLASALLRRSPHALCPCGLGYRVFTLRAPEIQVNESRDPLMGFGSSSEVAQAPSRCLEPLVFQEPDARYAPNAN*
Ga0129320_142681	Ga0129320_1426812	F064770	MDFNLKTYKCSRIKHYFKTSNFFFLFQGTSLYNENWIKIEQILVGYELKSYRILNKLMITTLKNSMLKNVLVLTHGPIILLTNNYNNTKVTFKELDNINPLINLLGFGLNNKIYFKRQIKNLKKMSYLENVSLLHKSMRTVVKIPYYKF
Ga0129320_144433	Ga0129320_1444335	F095528	MAIKTSTPKLNVQPSYITLKLPTGNFTTSYGGAKCSGQLVKMKGAFTALDNYVQTAGKTKSYGEAMNDLLNPVLLNRLVPGWDKPIIADTFIAGDSVSFIDGMFTKKYPGKFDVVSVKGKYVYIKVLNKRTGNTENIGFAATELKK*
Ga0129320_145039	Ga0129320_1450391	F046210	ILVIVANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAALKSCNVNS*
Ga0129320_146827	Ga0129320_1468271	F002779	KNLKLELFNFKKDLSFEQEEIFVIVESHMNACNQNSEKTIITSLNERLKPYTYDMSVKALLENLNDDMANYELLYELKNLYSVLNSKNQGELYRQPINVLLQTINLETDQDRMSKVLNELAIYDWVPEIKLFVHNLTTSPEKRTNLLSGGNAESIFTIVEQVEEGHIALVRDSWFLLTENNIEKTLLENHVKDIDALQSLRTLETAMKFASVTENRINFRISEYMTIGLGVGKKGGLFINDDELNEETTLESLFNSPIVPIVNKNFYPVLLETSKNLDKFVELDVVKRVNNLVNPYLEVFAFNYKNTTFVYRCDERYGNSFFKYESALELVNEVRNELNYDLTYFFENKLSKELIVKRKLEDKEREISMKLEDINFNIEKIKGSIQMIGESETLTTALSNLEKRKGNLDTDLLAVKELQYKE
Ga0129320_147039	Ga0129320_1470391	F001024	MRPETPLAVENGVGKPAAPLRWVRPMSARERECGELP
Ga0129320_148449	Ga0129320_1484491	F085004	ALVFADDGVTISNGVHLIVPADADYQTRRMVTAKYRPPSLDVKTNVYGKDKKSISLALPMVLTSGQVVFNTIRLEREVHPSLPAATAAELCSLGAQLLTDSDVLGFWANGSLS*
Ga0129320_153094	Ga0129320_1530942	F018020	GMTEKVAMILSGYSSRILEIKRVPIPEPVPPPREWVT*
Ga0129320_153508	Ga0129320_1535081	F018726	VTIAAAAPTPALVLAVIKSDGYGSERVDTGGNGYSLIINHQKGKAVSKHYVQLVQTVNAVDPYTGLTKKQTASCSLTITRPSFGFTDAAIVALAKALTDVRDDSEVTTAKLIQFQS*
Ga0129320_153689	Ga0129320_1536891	F000344	MRPRHPHAAESGVGKHTARESERVQACATGKERVTHAH
Ga0129320_154200	Ga0129320_1542001	F081412	MCAAKSSAENCFSDKISIMEVCPDHVLEGLREKKKWYLRAEMIDNDTYKRAMTVSDFNKGRSVSHLKLKTWDYGKTANLRSDSIWQDDRYDPTKF
Ga0129320_155021	Ga0129320_1550212	F103327	VRIRSATYDETSSAKNVLALSHYSNILTFISSSKLAAALTKKVSDDWKSDAAELNKDVPSHAIVLSEVDKKHAALPVTSLHDLFHNEASLTGNTFRTSFSVVKVEGAVQDAVKVYDKKNKKSSSAKGAKTGELIWQVSLLCKDASTAGNANKYRILVHSHEGLGANFFGKAANLWSDAAALKKTEKQVA
Ga0129320_158634	Ga0129320_1586342	F043967	AAAFSPAAVPTLRANTAVCANKFGQSAPAGAPPADLFNIWRDDYMLTPAQAAAEEAERSRNAFFDGVLPPFSNIGNTERGTTPDAPTLRGIGVKADFSTANPTSAYDTAAFGSVEIINKDVLKNPITNAGPEAAAKKKLAEKKTTYATQAFDNFVNWRRSGSE*
Ga0129320_158732	Ga0129320_1587321	F006508	VALANAPSKAVADQRQVVKTRRQNRKRVLTWFAGRWRNHQPKRAEKPHSK
Ga0129320_159151	Ga0129320_1591511	F037503	EMHLGAALELSIAEVELLIGLEGFTAYQTQTNSECYNIYPGVRRWVLRSSAERGTTQTIC
Ga0129320_159930	Ga0129320_1599302	F000237	LMVLHYFTPYYLYLVKLHALFCHESDSDSGENVYEDKSGSYVSFYDAFLKEIQDAYTSLVFVYFFMHHFNGGPVNYFFFERNISEMDEIRFYGVAPHYFRPLMGLLVVSPSHYEGLMMGLFILLAALPVIYNLYNSNNNYFSVIPMQSSKLQSFCFMIFMLSMYCTASMLPCGRYYYAPEGGYVGNPVKFSYQYCYLYLGIVHHLDLIEHHCFRYSRHIRNHSVRIFRSTYRTGNPVDNKTTLMFGKKTSNAYGIKNINR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010305: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_RNA2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences