| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010248 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046783 | Gp0111641 | Ga0124947 |
| Sample Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome) (version 2) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 94859904 |
| Sequencing Scaffolds | 14 |
| Novel Protein Genes | 18 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii → Roseiflexus castenholzii DSM 13941 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wyoming: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004307 | Metagenome / Metatranscriptome | 444 | Y |
| F004791 | Metagenome / Metatranscriptome | 423 | Y |
| F005302 | Metagenome / Metatranscriptome | 405 | Y |
| F007404 | Metagenome / Metatranscriptome | 351 | Y |
| F009403 | Metagenome / Metatranscriptome | 318 | Y |
| F035322 | Metagenome / Metatranscriptome | 172 | Y |
| F050404 | Metagenome / Metatranscriptome | 145 | Y |
| F056643 | Metagenome / Metatranscriptome | 137 | N |
| F057401 | Metagenome / Metatranscriptome | 136 | Y |
| F073593 | Metagenome / Metatranscriptome | 120 | N |
| F073601 | Metagenome / Metatranscriptome | 120 | Y |
| F081941 | Metagenome / Metatranscriptome | 114 | N |
| F082732 | Metagenome / Metatranscriptome | 113 | N |
| F085749 | Metagenome / Metatranscriptome | 111 | N |
| F098323 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0124947_1003894 | Not Available | 586 | Open in IMG/M |
| Ga0124947_1008820 | Not Available | 685 | Open in IMG/M |
| Ga0124947_1010048 | Not Available | 1988 | Open in IMG/M |
| Ga0124947_1012841 | Not Available | 561 | Open in IMG/M |
| Ga0124947_1017165 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 649 | Open in IMG/M |
| Ga0124947_1038361 | Not Available | 637 | Open in IMG/M |
| Ga0124947_1047411 | Not Available | 505 | Open in IMG/M |
| Ga0124947_1048431 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii → Roseiflexus castenholzii DSM 13941 | 662 | Open in IMG/M |
| Ga0124947_1072689 | Not Available | 534 | Open in IMG/M |
| Ga0124947_1083766 | Not Available | 610 | Open in IMG/M |
| Ga0124947_1090835 | Not Available | 887 | Open in IMG/M |
| Ga0124947_1097035 | Not Available | 695 | Open in IMG/M |
| Ga0124947_1099809 | Not Available | 553 | Open in IMG/M |
| Ga0124947_1129413 | Not Available | 1049 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0124947_1003894 | Ga0124947_10038941 | F057401 | YRLARWANHAWGLLEPEHLAEVWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAAGLVVGAEGYKAAPRYWARVARLLIIAEKPSDLEAEGIRDALRAMVGEEPAALEEFDGYFELTGPGILAGPEVFQPTAP* |
| Ga0124947_1008820 | Ga0124947_10088201 | F081941 | TGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFSDLKDLLNSRLNHQNKVSPTEIISFLLLSTTILIGKTLHLVLVLNIFG* |
| Ga0124947_1010048 | Ga0124947_10100481 | F035322 | DISKAPNRVYGQYRGYWTNHLTATTMILPLESRRQSLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTRDGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR* |
| Ga0124947_1012005 | Ga0124947_10120051 | F085749 | MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRG |
| Ga0124947_1012841 | Ga0124947_10128411 | F004307 | MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGAPQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF* |
| Ga0124947_1017165 | Ga0124947_10171652 | F073601 | VGAGCPLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFGLLRFAWRCAIKIMACGSIIRTLPVEKRALAGMGVLLQQG* |
| Ga0124947_1038361 | Ga0124947_10383612 | F007404 | VAGEGESWMELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEWFE |
| Ga0124947_1047411 | Ga0124947_10474111 | F082732 | MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSAKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLIAANRGPLMLRTNAAELALPVLEQDQTPDVESSALIGGVR |
| Ga0124947_1048431 | Ga0124947_10484311 | F073601 | MLQAKATCLVIMVLPAKRREGQRMFWVLHFAWRCAIVKIVACGSIIRTLLVEKKALAGMGVLLQQG* |
| Ga0124947_1072689 | Ga0124947_10726891 | F073593 | LQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVALIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFVTLLINAAINLIVESAFPKIGTSQCPPEQVVRSNIFGDYCINLNINPVIDFAIVVINSLLLPASAIIAVLFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLS |
| Ga0124947_1083766 | Ga0124947_10837661 | F098323 | FINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCPSGNGTCAAEKLRKNNNLTENAKKCVGLNSNNLNENQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSSWSDQEIVNKCNSTIPANNSSRKLVKLVPDNNGQLKEVLATRINVKEKLLGVARATEDNFYLTVANQLANPFSNQS |
| Ga0124947_1090835 | Ga0124947_10908351 | F005302 | WTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVMMVTVRTPTLRQYAIAATNPTNLA* |
| Ga0124947_1090835 | Ga0124947_10908352 | F004791 | MSEPAKIYDVEAIRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSKVAGLTPNVATITLGEYHQFLEASERKIAFPDVAATLLVKAYGDDILNEPYAAAAPLLKRIFDAVGDEG |
| Ga0124947_1094133 | Ga0124947_10941331 | F098323 | FINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCDSGNGSCVVLKFRKATEDDKERYRQLTENAKKCVGSNSNNLDDRQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKE |
| Ga0124947_1097035 | Ga0124947_10970351 | F005302 | MAHSGVVQGLYAGNFAVEISTNGTTWTAVSDAIVKIDDVELSRPSGEVYVGGSSDYATVTVGKREPVEITLTFLYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYV |
| Ga0124947_1097035 | Ga0124947_10970352 | F056643 | GRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV* |
| Ga0124947_1099809 | Ga0124947_10998091 | F050404 | MNVNVSNLISNLLSLIVTILIILVLFIGSDVTAQTTPDPTTQEIENFFDPTYRKIAECVRKKYTQNNGNKTTIAGFPTSFFSYDTNAIKTRIQECSGLNIIDSDLVTVVSCLDGIELIPGVGWNQVRPDRLRQCMLATKDTLGIHRQAFVDCVIRNRFNSQTKYLDKDISSG |
| Ga0124947_1129413 | Ga0124947_11294133 | F009403 | VFRITRRGRGRGRAPVLSVVQSGARLEVREGRYGRGALYAYCDVDDTLAAHTLLLTFADMRARCVHIHTDIPVISEQRFFNSFRAGAGPQPDSDPDSDAGPSPRLPDADADSDSGGA* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |