NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010175

3300010175: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_B MetaT (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300010175 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111614 | Ga0124927
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_B MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size16014942
Sequencing Scaffolds11
Novel Protein Genes15
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available10
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006938Metatranscriptome361N
F007225Metagenome / Metatranscriptome355Y
F014385Metagenome / Metatranscriptome263Y
F015874Metatranscriptome251N
F032666Metagenome / Metatranscriptome179Y
F039156Metatranscriptome164N
F054065Metatranscriptome140N
F060938Metagenome / Metatranscriptome132N
F077351Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0124927_103870Not Available1652Open in IMG/M
Ga0124927_104078Not Available531Open in IMG/M
Ga0124927_104475Not Available605Open in IMG/M
Ga0124927_115295Not Available1385Open in IMG/M
Ga0124927_117616Not Available695Open in IMG/M
Ga0124927_118354Not Available551Open in IMG/M
Ga0124927_120051Not Available651Open in IMG/M
Ga0124927_120617All Organisms → cellular organisms → Bacteria798Open in IMG/M
Ga0124927_121911Not Available564Open in IMG/M
Ga0124927_125246Not Available626Open in IMG/M
Ga0124927_129328Not Available958Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0124927_102628Ga0124927_1026281F006938MLHIRVTGAKSGGLSEAELVSDIPLKPLLATVKTGHVVDRRAAELVTKLFGKEVRDYARSFTRSGATLELLYDSLRKYDHNDVAWSALSDGVKERLQKAMNLAYQVFGVRGLTPKPLNEVSVEPSSPGASWRLYGRQGKRTDFSVYTEGLARAQLLMDKSRYYQ
Ga0124927_103870Ga0124927_1038702F039156VLSPFSNTSALIVVGAVITIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVIAELRSLREDFAHTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVIFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNEGL*
Ga0124927_104078Ga0124927_1040781F077351VKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEKEWLVLWRGVLATRCLFVDPEGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFV
Ga0124927_104475Ga0124927_1044751F014385VIHSESHDWFEWVQLALVRMALEQLSPEEERAVWLYAEGATLSPKQRTLAETALQKIRRMLGVNAP*
Ga0124927_108092Ga0124927_1080921F006938DLLLSGPEVYDMLHVRVTAAKADGLSEAVIESDQPLKPMLAVIREGHAVDREAMGLVERVFGKEVRDLARHYTRSGATLDLLYESLMKYDHSDVAWSSLNDDVKRRLQEAMNAAYKVFGVRGLKPKPLNEVAVEPSSPGASWRLYGRSGKRTDFSVYAEGLARAEMIFRRAMRRKQPF
Ga0124927_108505Ga0124927_1085051F007225ELGNQPQKGGCVMRKFAAITALLAVATTASFAQFGIYGATALGGSTGLGGGFQGGFVNGQEFDLRIRMDVPPGVPRFPRNGGGSLAFIFNPRYIDIKLFAVETGDPITIAQAVADAQVGQIVNLSGYVFRGTTIDGDILVGTATAGAQRRADGTIGVRIAFLSTSVANFNATHAEPFVRTGPEDDDGNRRLPVVIVNWLNIR
Ga0124927_115295Ga0124927_1152951F039156VLNPFSNPLALVVVGAVITIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATALAHSIARELQTLQQLREEASTVITELRSLREDFAHTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVIFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPENEGL*
Ga0124927_115295Ga0124927_1152952F015874MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEYGADYIVCATADWPSAEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSSYPLRDVRPRDTLWSVIALPPTPDLTVPKTVYLEWDPNSIIGEILSSMRKREGLTGA*
Ga0124927_117616Ga0124927_1176161F015874MTEELGHRLKEEPVGTTIRGRIRVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPN
Ga0124927_118354Ga0124927_1183541F039156VLNPFRKPLVLVVVGAVVTIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGS
Ga0124927_120051Ga0124927_1200511F054065MAAFPLVSHRYRLLLAKAVGRWVHASGFDWTKERVGALVQYLLKLRAGENPCRPPWWSSRYLSYAERVATTASFEKFLQLVQAWRTALTAYGRLKSVPSKKDVEKFEKAVGSARILTVPLASGRVVEVDTEDWRSRFPFRAHFGVSPRQVLPEVRIHREVFP
Ga0124927_120617Ga0124927_1206171F032666RSRCSVGSVRPELGNQPQKGGCVMKRVLTLIAATALTASAVMAQTIVRISAYNPFVPTIVGHPNLGPNDVSGAGPFPALQSGVLPNQDGIYDLFLSVHPDQNWLTGGPNTSSRWSTLGFSLTYDSNYIDFVFRDPNNGTDVFVSSLPVGATFSRYIGARSPASGVAAGQVNAKSGANVTVTFALAATSNGNGLFDADGYLRDWFKNDYDGEPLRVRVNGPAIAALSGQTYSVSPGVPEGNIIIQLNPRDDSRNVIVDGRFIVPEP
Ga0124927_121911Ga0124927_1219111F015874MNKEEVEMTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKTVTRQWNRLAAAKSPGCEDLLLTEREWIVLWRGLLATRCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEYGADYIVCATADWPSAEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSL
Ga0124927_125246Ga0124927_1252461F039156AVITIGLVAVALTRLWVKQISLRLDESLEFDQKLVPLRSALTALRDATAQAHSIARELQTLQQLREEASTVITELRALREDFAQTYNNMLDGLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNEGL*
Ga0124927_129328Ga0124927_1293281F060938LLRNAAQEMGVQISPENFACGVFTNGSDGRMSVMINAAIADAQDLTLDDLRAGADVMFCYVRTDDGYRNFLIVRIRQVNNLWVAEVRNLAGETMTLDVEVRTGQPLSNKMTTVWYPNGTVCVDRRIGKFRVVIVACAREPFITIPYRATSGGWEAQLDSACEQLMSSVRGAMQSRSGNSFRGALAISRDDVLSVCQLSGMASEMQLNDSSRPLGYCYIWKERNGDDLPARIFPIKLVSLSNNGYAVDGAPGIGVTLEPSNPTIKTKSSPRPRVEDNRMQVLLPVDDQLVCLEVPLTQ*
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