Sample 3300009829

Basic Information
IMG/M Taxon OID	3300009829 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118754 \| Gp0148683 \| Ga0130086
Sample Name	Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample D
Sequencing Status	Permanent Draft
Sequencing Center	QB3 Vincent J. Coates Genomics Sequencing Laboratory
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300009829 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0118754 | Gp0148683 | Ga0130086

Sample Name

Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample D

Sequencing Status

Permanent Draft

Sequencing Center

QB3 Vincent J. Coates Genomics Sequencing Laboratory

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	44777288
Sequencing Scaffolds	19
Novel Protein Genes	23
Associated Families	21

Dataset Contents

Total Genome Size

44777288

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea

Ecosystem Assignment (GOLD)
Name	Sorghum Rhizosphere Soil Microbial Communities From California, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Ecosystem Assignment (GOLD)

Name

Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → rhizosphere → soil

Earth Microbiome Project Ontology (EMPO)

Host-associated → Plant → Plant rhizosphere

Location Information
Location	California,USA
Coordinates	Lat. (^o)	37.887207	Long. (^o)	-122.304401	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

California,USA

Coordinates

Lat. (^o)

37.887207

Long. (^o)

-122.304401

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000025	Metagenome / Metatranscriptome	5578	Y
F000360	Metagenome / Metatranscriptome	1232	Y
F000654	Metagenome / Metatranscriptome	958	Y
F001256	Metagenome / Metatranscriptome	736	Y
F002516	Metagenome / Metatranscriptome	552	Y
F003193	Metagenome / Metatranscriptome	501	Y
F005440	Metagenome / Metatranscriptome	400	Y
F005905	Metagenome / Metatranscriptome	386	Y
F009871	Metagenome / Metatranscriptome	311	Y
F010597	Metagenome / Metatranscriptome	301	Y
F015429	Metagenome / Metatranscriptome	254	N
F021903	Metagenome / Metatranscriptome	216	Y
F024706	Metagenome / Metatranscriptome	204	N
F028113	Metagenome / Metatranscriptome	192	Y
F030647	Metagenome / Metatranscriptome	184	N
F045048	Metagenome / Metatranscriptome	153	Y
F070802	Metagenome / Metatranscriptome	122	Y
F078090	Metagenome / Metatranscriptome	116	Y
F089744	Metagenome / Metatranscriptome	108	Y
F093133	Metagenome / Metatranscriptome	106	Y
F101386	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0130086_1003524	Not Available	780	Open in IMG/M
Ga0130086_1005265	Not Available	569	Open in IMG/M
Ga0130086_1008495	Not Available	566	Open in IMG/M
Ga0130086_1011121	Not Available	580	Open in IMG/M
Ga0130086_1015318	Not Available	1245	Open in IMG/M
Ga0130086_1017027	Not Available	616	Open in IMG/M
Ga0130086_1026944	Not Available	700	Open in IMG/M
Ga0130086_1029635	Not Available	583	Open in IMG/M
Ga0130086_1041006	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	589	Open in IMG/M
Ga0130086_1042580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
Ga0130086_1057633	Not Available	749	Open in IMG/M
Ga0130086_1062040	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	606	Open in IMG/M
Ga0130086_1067660	Not Available	626	Open in IMG/M
Ga0130086_1069418	Not Available	533	Open in IMG/M
Ga0130086_1075125	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	560	Open in IMG/M
Ga0130086_1077306	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	641	Open in IMG/M
Ga0130086_1091997	Not Available	566	Open in IMG/M
Ga0130086_1104158	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	745	Open in IMG/M
Ga0130086_1108570	Not Available	627	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130086_1000575	Ga0130086_10005751	F002516	VARTREVAGYAIPGIVVFFFWLVVVLLAIILLAFIVHWAGGAAFQLRLGHFNMNVGFT*
Ga0130086_1003524	Ga0130086_10035241	F000654	DQLNKVMGDDLTKVMDSIQGVKSRNEKYSFDLGQRGIKPVLDFMDLTKLSENDPNLSFLFQGPLSGLEEFFRGNTFITYKYLKAHALLLELGKLFQVIEKAANCAKQGGTLLVYGVANAQLNALLDSTKSMINAIRDEFTAVCKIAECAFEKLVYENKATVERSKWMSHFQHVFPASNMINDAVKDVLHDVADIKATANAMTLYERFQKAQNDTADFLSSAEGFSQRTAAVLGQEYKKPEIKEDDLKKGSIDNTEALFA
Ga0130086_1005265	Ga0130086_10052651	F015429	MASLVLFTLLVAAVYCAAPVKPNLNNNFIAEVHYHIQRGNEPPRDFNGRWFSDKTNMRDRFDVEISGTGRVDIWQIWNSTKTGNEYIYEAATQNCRKLGYTLEFHGPFDFDQSATYAGACDGTAARWQFIIPNAWEFDLCASTDGLKPYWVEYKQLVAPKFHEIVRFHSYNPGVPDKSNFVIPSACANA
Ga0130086_1008495	Ga0130086_10084951	F000360	DIIPENIHFHLESDSDFSFKNIKSKGSHTHLVITLDKFRTELKNMTFFYKKKTFPVLTDSGVVTFRIGGDGARLKLVFTVDQNSGDNLPRLTEGYADFHIHQMDINFDKSTLTHDVLLPMMSNMWKLQIQTQIEKVVEKNLTGVIQKLGEQLTQSLSEVNRPFIWSGLETAKQAVKKSEIGQVAANRR
Ga0130086_1011121	Ga0130086_10111211	F030647	GANFLLYLRTPCVGSEIETRLGCPVLNSDHVHLSDMTVCMTSSSVHLSFVIQHGGKIKPKIGPKVIHILLALEKLLTLLKFISFIKTCFPIKSSRVTTLLK*
Ga0130086_1015318	Ga0130086_10153181	F070802	PALRIIRILPSAISSIFYISSSVLAIMKQYSSIVLFMLVAISGHAFGAPLDGSNGDCPGGLANGAQIERGRSVFECRNGNVVAKACVADDLKHIDIGSTTDKPAFRLKCNLNSDGSATLEPTACLFQGQERKIDEQFEDATNFYTCKKSEDGLKVITAGCIDQGKRVPLNQQATHDDLVFVCNQTVNNGARMMPSGCVKDGKQYNVGDSFENGNLWFNCTRTGSEKVAAKPAGCVTSGKRVNDGDRFSDNEVIFECAIDQPKPRLIGCSQRDEKGETVERRVGCTWVEGPEPFQYEWACRQESDSAKKVQVRCNYKVGGGVYNIEPGCYRVIDKSAFGCLNSAGSLKLQSFQGDNAEQSAQGAGLHAC*
Ga0130086_1017027	Ga0130086_10170271	F001256	NTSGRDPIFGSMKSIMYPVMGVIFGVAWVILAFIGASLPLDLLLLIVGFIDAVFGIFLIFIPITTFLGLFYMAIGAFTIAITRHSWGGDTGIDFLLALTIIIFLLTGGLTFIAFDWGLGNNFIDRMAAYTPFCDPDMNIYQNGRSTRCQNYAYFVTFCVFLLFLIQPIGMIAAAFKRVGRHHDTTVVVNEKHKENKNTV*
Ga0130086_1026944	Ga0130086_10269441	F024706	MYDTKKFLVSILILGGVIKLLQLGVVVHHAISSYSSTLLVSAILTGIYVTVHFMGLCSAAKERKCGLKAFSVIQTVYVVMHIVGLLWFLWGITSFHHPTSDNLENNQPISLTKLNGDEDILTKPADANEAQSTSSSSTTPCKFSRYVAIGLFSLFILVTVLDLLSAILAWKGYKQLVASEAAVETFTYLSGNDSDIMMTPPVQQPLNVVYVPANLYDPTQLY*
Ga0130086_1029635	Ga0130086_10296351	F021903	DLHSSNQILPYAKLVTDSAQGYGPEVVDFYGVPGQLALGFSSTYSAGAAANAYEVWVDRPNSSPNTDSAFTFLYDTNSFIVVYQADVGNGNKQILFDDRTKVPYAYGFYNTDQWNKVPTTATIWHIIDLSQAAQGIVFNGFPGENNTADTTAYAGAKYGFGSANFEKTKQIPCGHTASRGANPAYCPATLTYP
Ga0130086_1041006	Ga0130086_10410062	F028113	SPIDILKHTPVGQAKMEDLISVDLTEMIELPGSGVHFFQTNQVTSTANYKSVSGLTALRTYIFGRDGIFSIKLGAQGDTEFGDGEWQNIECNIVENATPTVADPEGLIPGWTSYRVHFTTSLGPDTTIRIREIDAASAIS*
Ga0130086_1042580	Ga0130086_10425802	F101386	IPQYSAQRRAERVRLDESIPAVVRFNDGNRTSGRLKVVSLTGGLLSLQRPVRQGSVGKLMFLTPAGSVLGSAEMLTPMSWELQPFKFVDFSGDDHGRLETAIQSFLHKKRKDDQKQQNDRGVFERTRAW*
Ga0130086_1046913	Ga0130086_10469131	F000025	LIFAILAAVVVAQNKPTWPKAASASIFAHGWERRGDNHFIRWWFDQTQGKERVDGPREFLGEFYWTTTILDTMTKRETFIIHQESLITCYQRATNGTIPTPNFANARYVGKAEIGGVVVDHWTERSPDGRDHLQIYDRVDTGYLRRMDFDDPRRGHALTITFHEWDAGSQDP
Ga0130086_1057633	Ga0130086_10576331	F009871	EVTENIEEVKDAVEENTNYIITKDRLPQNKAYARKRVEDIYEHGELAKGRLVENAEHVVHSTIAGIKDAAEAIEDNTKFVIPHDHLANPNGKPVIEKTIDLTDDVNRAIERAKEAQPKIIENTTVDLTDRLKNLVPKVEENITVDLTDRLKNLVPKDDQPEGIKENANWAKEGIKDNVNYAKDVFGENASHKENTHFTQNVLAGNVNYAKESQTEVLAKGLPVDSKDRTPEYSPNINVVLNNPLRFEIV
Ga0130086_1062040	Ga0130086_10620401	F000360	SRDSNREFWLDNITLCGYDIIPENIHFHLESDSDMSLKELETKSSHTRLVIRLDKFRTELKNLKFWYKKKTFPELTDSGLVTFRIGGNGARLDIVFTVEQLVGGRPRLTEGYADFHIRQMDIDFDKSTLKHDVLVPMLTTLFKQQIQTQIEKVVENNLTGAIQKLGEQLTLTLSEVNRPFTGGLESARQALKKSEMAQVYGN
Ga0130086_1067660	Ga0130086_10676601	F010597	MSTCGDEETWRIGTIVCGGAHIAWGLLVVIAAIIGLTLAGTESALVCDKIFELANVTHIEEQIPEEDFNTDIQFGLTFNASEPWTRDTCVKEIFIVGIIVGVVSLVLSLIFFIVPGILGVCGGQNKDTGLVCGFIVCLSFLMVLEIASISASLAMDGTRFEFDSKYTLVSGVVGVVLTCIALIFAGSYRTAVKDDEKAVALI*
Ga0130086_1069418	Ga0130086_10694181	F089744	VHSVKIGLNSIYWRLYALLKAYGCRIISDSYRHGDTSNYCQQQTIIYPSTGNGTGVELVG
Ga0130086_1075125	Ga0130086_10751252	F045048	MASIPIGGHIAPSSTTGERALWKNVQNIAKKNKASESIKNPTPKFNPLCTAKV*
Ga0130086_1077306	Ga0130086_10773061	F005440	GIVRSDLTYVDTEGRTKLDVDMLVKLQTVLIPVLANTFQKIHIPRVESSDPKLDFWADNIVLCGYDILPDNIKFHVERDTELSIREFDTRGSHTRLVIHLDKLRTEVKNIEFYFKRKTFPALSDSGLVTFRIPENGAHLSIYFTIEDRPGENHPRLEEGYAEFAIRKMDIEFDKSTLKHDVLIPMFTGLMKPMIKSRIEKAVETNLTNALKQL
Ga0130086_1084622	Ga0130086_10846221	F078090	VRLDLANQGMLTGLLKNGTDSYWVDMVGRSQSNKFDQVGFSGIWPANVGVSSFIGVCQRCFGEEQILVNVVSRQKGTPCGTVGPTRYTTQYVFRRSSTLQCPNLPSLM*
Ga0130086_1091997	Ga0130086_10919971	F000360	DIIPENIHFHLESDSDFSFKNIKSKGSHTHLVITLDKFRTELKNMTFFYKKKTFPVLTDSGVVTFRIGGDGARLKLVFTVDQNSGDKLPRLTEGYADFSIRQMDINFDKSTLTHDVLLPMMSNMWKLQIQTQIEKVVEKNLTGVIQKLGEQLTQSLSEVNRPFIWSGLETAKQAVKKSEIGQVAANRR
Ga0130086_1104158	Ga0130086_11041581	F003193	SIAVSVLTTTATIGEYADYANFSSLSLATAIDSTVENVARELAYRLGESLSGLVRATADGASSVDSSVLNQLGATNLTTFTTLSLNQIRNSVQSLAGRSVRPFDEASKAFCGVIHPFALGDVLADTSNNSPIDILKHTPVGQMKMEDLVSVDLTEMIELPGSGVHFFQTNQVTTTSNYKSVSGLTALRTYIFGRDGIYSIKLGAQGDTEFGDGEWQNIKCNIVQNAEPTVADPEGLIPGWTSYRVHFT
Ga0130086_1107412	Ga0130086_11074123	F093133	MIQETHSLVKMDVIIVLASLAKLLVRKTHVDAIMKVIHTMKEILFLA*
Ga0130086_1108570	Ga0130086_11085701	F005905	SGIAVVIGGSTPGLTNTANLETNPAPGSDSNARLDIRIRDSASIPIPNAHVTVLIDKGTLAMRRDISSFPNGGYEVIEPVPGAVYFGSNVSGDTCDQATNGWWTQSAVNGNYTWPYSSSSRTQQDGYTNIDGILSACVYVDNTLAPNTTPGKINVQAIVESPTQGGLYNGSAYYNPLYPSNLSLPNYLASPNVVLTATITVVGPPASI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009829: Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample D

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences