Sample 3300009536

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300009536

3300009536: Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre ? E19

Overview

Basic Information
IMG/M Taxon OID	3300009536 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0120383 \| Gp0147057 \| Ga0129295
Sample Name	Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre ? E19
Sequencing Status	Permanent Draft
Sequencing Center	Oregon State University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	719362166
Sequencing Scaffolds	21
Novel Protein Genes	24
Associated Families	23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities Associated With Trichodesmium Colonies (Puff Morphology) From Station Aloha, North Pacific Subtropical Gyre
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Microbial Communities Associated With Trichodesmium Colonies (Puff Morphology) From Station Aloha, North Pacific Subtropical Gyre

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.0	Long. (^o)	-158.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F001504	Metagenome / Metatranscriptome	681	Y
F001918	Metagenome	617	N
F002883	Metagenome / Metatranscriptome	523	Y
F006348	Metagenome / Metatranscriptome	375	Y
F007756	Metagenome / Metatranscriptome	345	Y
F008889	Metagenome / Metatranscriptome	326	Y
F013897	Metagenome / Metatranscriptome	267	Y
F016674	Metagenome	245	Y
F018383	Metagenome / Metatranscriptome	235	Y
F019153	Metagenome	231	Y
F021120	Metagenome / Metatranscriptome	220	N
F024331	Metagenome / Metatranscriptome	206	Y
F025050	Metagenome	203	Y
F030123	Metagenome / Metatranscriptome	186	N
F033077	Metagenome / Metatranscriptome	178	Y
F038720	Metagenome / Metatranscriptome	165	N
F040681	Metagenome	161	N
F056680	Metagenome / Metatranscriptome	137	N
F068936	Metagenome / Metatranscriptome	124	N
F078838	Metagenome	116	N
F087326	Metagenome	110	Y
F101341	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0129295_10173963	Not Available	628	Open in IMG/M
Ga0129295_10299718	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68	662	Open in IMG/M
Ga0129295_10408355	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
Ga0129295_10414905	Not Available	563	Open in IMG/M
Ga0129295_10417676	Not Available	502	Open in IMG/M
Ga0129295_10442551	All Organisms → cellular organisms → Archaea	579	Open in IMG/M
Ga0129295_10503912	Not Available	555	Open in IMG/M
Ga0129295_10594565	Not Available	769	Open in IMG/M
Ga0129295_10786533	All Organisms → Viruses	594	Open in IMG/M
Ga0129295_10791391	Not Available	502	Open in IMG/M
Ga0129295_11030644	Not Available	614	Open in IMG/M
Ga0129295_11169417	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	804	Open in IMG/M
Ga0129295_11211836	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	782	Open in IMG/M
Ga0129295_11212772	Not Available	541	Open in IMG/M
Ga0129295_11303683	Not Available	691	Open in IMG/M
Ga0129295_11460225	Not Available	509	Open in IMG/M
Ga0129295_11498970	Not Available	911	Open in IMG/M
Ga0129295_11544406	Not Available	622	Open in IMG/M
Ga0129295_11554052	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	626	Open in IMG/M
Ga0129295_11620139	Not Available	942	Open in IMG/M
Ga0129295_11744157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	529	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129295_10173963	Ga0129295_101739632	F068936	MKLIFNIMSAASFGISLILVGVIIYLNMTKQQRVDENRKYMLDVIEKMVDTRIQQSMPPVTGPVHGTDTKN*
Ga0129295_10299718	Ga0129295_102997182	F018383	MEKLTFNNEQLEFLKFIVQDFEYNDDHERYMIEQIENKIYQAQEKLMLRVIGGMS*
Ga0129295_10408355	Ga0129295_104083551	F016674	MSKKFKKSNVIDFKKASLKKFNEDNEIIFTVEDQNYILGDLVSQAHNDNELEFVFRLEEFDEEDSTTVH*
Ga0129295_10414905	Ga0129295_104149052	F087326	MKSLIDKAIHGDMDSDRHLISIFAMALASRGKVFVELGVREGHTTEPLYEAAKLVDAHLWSVDLNLSLIHISEPTRPY*
Ga0129295_10417676	Ga0129295_104176761	F033077	VAKATIFFSHNKKMTTPKPNDPIPTYKVLRLTTEGWTDFDSQTAVNLTKEQCDQVLNNLVQMEGIDFRELKAVRDN*
Ga0129295_10442551	Ga0129295_104425512	F101341	VVRQSIYRQKCQWTSVKKAADLVDDEFDLVIRMRTDLEFHDRVPLEACKGNGLYMMNGSYQAGAGREYCDWFYCGPHKRVQEFDPLQVFDDFYADGIRHMHDLVIETLKSLQIPHSVLDLKAWMMDRSKIK*
Ga0129295_10503912	Ga0129295_105039121	F001504	YYAVQTFLEDDELCKIWNIIEIAMNRAGYDVSNAELSMRLYDNELEDNIEYDMEHLL*
Ga0129295_10503912	Ga0129295_105039122	F030123	MSAISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDTAPVLIEELVEIMFDEQIDHLEDVIVNHIGVEVYPE*
Ga0129295_10594565	Ga0129295_105945652	F006348	MVTENTPYRNKKYIVEDIRFDSKFKTDDEIKDLEFKSLNGLGVWDARGRNEDERINDLWEKVQNYMGVYLTSLEYCNNPPHPLTAFK*
Ga0129295_10594565	Ga0129295_105945653	F008889	FMYTTEQFDKDVAGLRALIKMCDDLEKENNKKADALIKQINGENAFYWRAN*
Ga0129295_10786533	Ga0129295_107865331	F019153	MKDDGFMKRIHTAIPPKEELMIKLRCREVWACEEIDRIKAFCIDMMKNHARAEAVLSKAMMKVIELEATLAVLQAKTKKSTGIYKLRWWMEQFYMHLKYRHITKRYSRDA*
Ga0129295_10791391	Ga0129295_107913911	F007756	MKTVTEKRYFVTTKFEKYGTYTIMARSKEHAIQMWKDGEWNFDDYESDYGEYNEVIDEIEEEVFADTQLSLE
Ga0129295_11030644	Ga0129295_110306441	F001918	AHFWWDDEYRGDMFAWNSELKYPDDYDPIDHFEQRMKPKQLVWEKYPKFDMSPYKMVSQMEFPLSDDIVRQSIYRQKCQWTSVKKAVDLVDEEFDIVIRMRTDLEFHDRVPLEACKANGLYMMNGSYQAGAGREYCDWFYCGSHKRVQQFDPLPVFDDFYAAGIRHMHDLVIETLRTLQIPHAVLALSPIHL*
Ga0129295_11169417	Ga0129295_111694171	F038720	AESTEFSASDTYKGLVTSLQGQIDYHQECIDKCKQMLFLIHADKPKVGEVVSSYWSDDESEEARAAFDDFWKSDDVMLDIKDHYKSDDDT*
Ga0129295_11211836	Ga0129295_112118362	F040681	IMAGIVSATSIRGDGRFLTGVSAGKFITETAGISTNTSVGVNTSTVDDNDLTGIGNSFKGLYVANGMVITDKELTGVHYIGTNFSSVMAGPVTIGGTLTVDGNYVVV*
Ga0129295_11212772	Ga0129295_112127721	F013897	MNFTKDQLLTLMNTIDFATDNDASYEEYTILESGSSDLEPIRDILYNEYITKGENS*
Ga0129295_11265071	Ga0129295_112650711	F025050	VYDHDSDNALALPPHPHAYVASPSIPSLGNEPIVAPDRSVTWTGATGGDTIQLIQVTEGASDHGFYSGEVVTYNVVSGSLGQLIDGKNYYVSRVSSNNIRLANSLPDLVNGDFVDATGSGTFKISVPDLAGKK
Ga0129295_11303683	Ga0129295_113036831	F056680	MEYDYEFMWDYEISVHDDLDESMHTQYAELDENYARRESTDFQTL
Ga0129295_11460225	Ga0129295_114602252	F078838	MPFNTYIDDRAMIPILLEHDWIIWKDTWTDCSYETYMALKKMMRHTGNAMPMV*
Ga0129295_11498970	Ga0129295_114989701	F068936	MSAASFGISLILVGVIIYLNMTKQQRVDENRKYMLDVIEKMVDARIQQSMPDVTGPVYGTDTKN*
Ga0129295_11544406	Ga0129295_115444061	F024331	MCDTKLKPLYMLIKVDVDAGIVHNQCQAGKYAVNHCNSLEYELADWYYPDDEQYPYIAK*
Ga0129295_11554052	Ga0129295_115540521	F001419	LNYEEILKCYEGETDIHASTSFEFGLMNDLYYHCLL
Ga0129295_11620139	Ga0129295_116201391	F021120	GIVGSEMCIRDSRGKVLMKVFTIQFTEDELTELENVLDQHVYAEAIENKGSEGTIGTIHNRILDVHYQNSDGLVPVQEVAHKHFRKDLDLL*
Ga0129295_11744157	Ga0129295_117441571	F002883	MSTLHHEDMLLEIFDEVCEAFPYLDEEKQIEIANNKFQELYQ*

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