| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009429 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114926 | Gp0118608 | Ga0120406 |
| Sample Name | Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844 no min length |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 791626083 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Archaea → TACK group | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Diffuse Flow Fluid → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mid-Cayman Rise | |||||||
| Coordinates | Lat. (o) | 18.374735 | Long. (o) | -81.797326 | Alt. (m) | N/A | Depth (m) | 2376 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025922 | Metagenome / Metatranscriptome | 199 | Y |
| F048391 | Metagenome / Metatranscriptome | 148 | Y |
| F054534 | Metagenome | 139 | Y |
| F104458 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0120406_10001204 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 883 | Open in IMG/M |
| Ga0120406_10390597 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium | 2696 | Open in IMG/M |
| Ga0120406_11303795 | Not Available | 545 | Open in IMG/M |
| Ga0120406_11431387 | All Organisms → cellular organisms → Archaea → TACK group | 1065 | Open in IMG/M |
| Ga0120406_12733040 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 758 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0120406_10001204 | Ga0120406_100012042 | F048391 | LREIGDKMNDSETVRPINSLDYLEELLNAGYSIKGPRTIRNPEADSGRDLISFKAFLKKGKEFAPEDWLSRMGYKFVEPNTFTKGHRIAYKIIDEFPDERFKSSYSLLKGGKEIPLYLKVELPKIE* |
| Ga0120406_10390597 | Ga0120406_103905972 | F104458 | MRRGWEVEFLDGTIIDESQMNWRKVPKKNIIRLTLRYDGREWNIHNKEAYLQKKRGSVIPGVASSFSVESRSIGWFEDNKKIWMTVDETTGRMRLEVEEF* |
| Ga0120406_11303795 | Ga0120406_113037951 | F025922 | RRMKDMARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIVDVVDDVPAVAVTLNTNDFGDVRTLAVLAQLPAVKRAMDATADSTTGNLVVVSGTDYTPTSTYLHGVSLADFAVVCGNLPGVTMWAPVQDECSLGTLDNNIDQTLFLDEVYVNSLEFGYTTGANATENYG |
| Ga0120406_11431387 | Ga0120406_114313872 | F054534 | MSEKEVTEKDYEEIVVKLAVSNDYLKKLEHLIDVKRIFSSRAEAFRRALELLFEKYKETLGESQTS* |
| Ga0120406_12733040 | Ga0120406_127330401 | F054534 | LTEKVEQEREYEEITVKLTLSNDWLRKLDTLISTKRIFSSRAEAFRRSLELLFEKYERELS* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |