NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300009186

3300009186: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG



Overview

Basic Information
IMG/M Taxon OID3300009186 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118430 | Gp0134317 | Ga0114965
Sample NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size8488730
Sequencing Scaffolds20
Novel Protein Genes23
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
Not Available10
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003007Metagenome / Metatranscriptome513Y
F004256Metagenome446Y
F009401Metagenome / Metatranscriptome318Y
F010748Metagenome / Metatranscriptome299Y
F011741Metagenome / Metatranscriptome287Y
F020864Metagenome / Metatranscriptome221Y
F021237Metagenome / Metatranscriptome219Y
F025742Metagenome / Metatranscriptome200N
F032198Metagenome180Y
F035159Metagenome172Y
F038145Metagenome / Metatranscriptome166Y
F039483Metagenome / Metatranscriptome163Y
F040943Metagenome / Metatranscriptome161Y
F051929Metagenome / Metatranscriptome143Y
F059655Metagenome133Y
F067459Metagenome125Y
F075600Metagenome / Metatranscriptome118Y
F083897Metagenome / Metatranscriptome112Y
F088340Metagenome109N
F100276Metagenome102N
F101136Metagenome / Metatranscriptome102N
F102806Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114965_10009All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage22692Open in IMG/M
Ga0114965_10151All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5523Open in IMG/M
Ga0114965_10174All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales5188Open in IMG/M
Ga0114965_10246All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4138Open in IMG/M
Ga0114965_10252Not Available4094Open in IMG/M
Ga0114965_10282Not Available3713Open in IMG/M
Ga0114965_10444Not Available2820Open in IMG/M
Ga0114965_10468Not Available2696Open in IMG/M
Ga0114965_10957All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1626Open in IMG/M
Ga0114965_11253All Organisms → Viruses → Predicted Viral1367Open in IMG/M
Ga0114965_11380All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1278Open in IMG/M
Ga0114965_11456Not Available1221Open in IMG/M
Ga0114965_11567Not Available1159Open in IMG/M
Ga0114965_11865Not Available1017Open in IMG/M
Ga0114965_12208All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage893Open in IMG/M
Ga0114965_12705Not Available772Open in IMG/M
Ga0114965_13141All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage693Open in IMG/M
Ga0114965_13998Not Available587Open in IMG/M
Ga0114965_14237Not Available563Open in IMG/M
Ga0114965_14479All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114965_10009Ga0114965_1000915F020864MGYKSAADGVTKSGKTKGKNLGDSGKEIGIEGGKGKSGAKSVTSEAMRKVGRNLARANNQK*
Ga0114965_10151Ga0114965_1015113F051929MTDQRYFAGGQEFLYPHAGDPTPPRDTKLLILTRGGVCIVGFWGNEWCLGWLPLPKRNMEKEDMK*
Ga0114965_10174Ga0114965_101747F035159MFQTAFQVNAFQNDAFQIVITPVEPTKFGGDDAPYTREELKRLKGIQKKLRQAEEKRVAALKADAENRKQTISDLVNPKPVANKQQTNIQSNQEVSVDIPSNLANIDRYIANLVTQQQDLQNAVLIRAAKLRLEQELAILEIKRQAELDDEEALLALLL*
Ga0114965_10246Ga0114965_1024610F040943MAYKEKVCPKCNSKHNKRGEFCSRSCGNSRPLTKEQKQKIGAAKSAWLTGGSEEAEVAVHNFVSGGNNKTAEPIAPIVSRDAGYRRFVEDGDLWEEV*
Ga0114965_10252Ga0114965_102521F004256MNYEYYYNNVPGVGQTRNNLIYTSLISTDKKTFVQWYHNDTGYHKGKNQVVNPQKMNEKWLREVNYLTQMRNTYPDLVPIIKNIDLDNKKLYLEIDGPDFWECSGCNMANYDSVLPNWQDQMLNIIQTHKDLGWHKYSMHPSSYFVVDGKLKSINYFFTYRNDEPNISIEEVESHIYSTRQDEMRKHLDKLGIKWN
Ga0114965_10282Ga0114965_102823F088340MIPLKKIDAHDLLVGKQYLIEYAGPHVVSNPRFKGHFIGNILPECEYQCVLSKFTNVLQTGNVSTPDLKLQDCFYNYYETGALTRAATILLLQRITGDKNFTFDNYY*
Ga0114965_10444Ga0114965_104442F010748MTSVLYSAGLNYQSGNPVRQEIMAVRREVDSLRKQLEILTEENLVYRKHLLKLSQKSEEGNGELTKDLMDLSSGSNAQNRREAGGGTVQGGGFRR*
Ga0114965_10468Ga0114965_104682F102806MAITTAQYSITTSAAQIVADTVAAEEVHLHTSGGLLYVGGADVTTSNGLRLDSGDKITFNTHVGPMYAVTNTGSTTVYVAVIEK*
Ga0114965_10711Ga0114965_107113F100276MGPLEIASILLAVLVGISLFLYLRPKYFTKLEGLEGFAVIALDGETMPRCFTRSPEAQNLLKTLYPMKQVAPASKEAMAYDELKLILEKILCIDADVTGLGAGPYQTYQLPFATQHDIEPPASFVGRCLKGAVKPRDIEVEFMKFNDRGQVLIDTLSYDDQQRP
Ga0114965_10957Ga0114965_109573F003007MYKEGRQYVLDAKVEIEGVVGDLKSIQTDAKGIWGFLTGLFGGKKEPIQQKIVEKPVKKVKQKTPEFDENKIYADVADALTKFFHAYNGLKHYIEEQEDVAIKAGNEEGQNIAIKLVIANLQMEKLNEELREYMVYHVPPEMKDLYSRVNKMIGHIANQQQLARKEESDKKRMLAWQRRQVIDKIQFRVMVGMATTMVILWVWITIAAMIPFSSL*
Ga0114965_11253Ga0114965_112531F075600RHWYIYPMEKITVGHKSFSQFSTWIRCGKAYQLEKILEAPQSPAWWFVGGSAFHSAAEKFLLNEFEKKNG*
Ga0114965_11253Ga0114965_112532F083897MAEDIAYVKPSKGNEGDYRSLGPIKVCPCGSDTWNVKCKFDDDGTIGIYFLDMRCLLCDSLAVAPFEGQL*
Ga0114965_11380Ga0114965_113803F021237MRYYDYEWDLEPRKILLDSELDVDALGWRAGDYFKVAKVNGRAMLIKVDPLEKFLRDGVDNE*
Ga0114965_11456Ga0114965_114563F032198LLEEIDSQEIAEWYAFDQRWPLPDPWQQTARLARIVMCASGNYKKNDIPDEAAFIPTAVRPEQTQSQIMGELMKLNTPIQG*
Ga0114965_11567Ga0114965_115673F011741MATENRLQREMTSRATQERPKQWQQADLLPEPDKEP
Ga0114965_11865Ga0114965_118652F059655MATINASSGQGALFELVARGVKDTYFVKDSKDSLFPYDARYESSVPHLAERKTMVPLADTAFGKNFEVEIDSYGDVLTECALEIELPSWLPPLPVQPNGQAYSPERANGLFSITDTDEISYGYVNYVAYFLFEKIQFLQDQILIQEWSGDGLLAKQMTEGSMNSSFLAQQ
Ga0114965_12208Ga0114965_122081F009401RVTTSDNQVTDYEITPLIEFAFEQYAKKGFHKALIEDQKQSDIYWLCWESIRRSGATVQPFGEKFLETLKTVEVLDSDPLE*
Ga0114965_12705Ga0114965_127051F067459MSVPFICVDGNLTLVLNNKSYQVLPDHINYKMIRDSLPTASEEEMLDLVDIEKAVASFSDGLVEVKNGQVFYEGEEV
Ga0114965_13141Ga0114965_131411F038145KNKMPYSAKQNKLFRAAEHNPAIAKKVGIPQATAAKMAHEGVKKDPHKLAQALMSK*
Ga0114965_13998Ga0114965_139982F025742MLTRVNGDKLTGTELTGAGPDGPIAWHVSGMGGSLHHYIIYLTRDDNGWERKVTLDRYHSVNQTGIQYKLECGTEHMHLYKSSMDKIEIFTNYLEYFI*
Ga0114965_14237Ga0114965_142373F075600RHWYIYPMEKITVGHKSFSQFSTWIRCGKAYQLERILEAPQSPAWWFVGGSAFHSAAEKFLLNEFEKKNG*
Ga0114965_14479Ga0114965_144791F101136TFIDTVQGAKKYFVNTFVTDKEIQKPLNDFVDTQTAFVKQVFQTNQALAEQALTTIEKFAKTAKA*
Ga0114965_14479Ga0114965_144792F039483MSKELDALSGIEIPSLTDFWKWVKKTFTISYQDEISHYLNQSVDYVDYENRVRNLQRRGMI*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.