| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008920 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117944 | Gp0126074 | Ga0103485 |
| Sample Name | Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NA2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Sodertorn University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 17087757 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 2 |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → bay → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Barcelona, Spain | |||||||
| Coordinates | Lat. (o) | 41.666 | Long. (o) | 2.8 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001293 | Metagenome / Metatranscriptome | 729 | Y |
| F001926 | Metagenome / Metatranscriptome | 616 | Y |
| F005505 | Metagenome / Metatranscriptome | 398 | Y |
| F009426 | Metagenome / Metatranscriptome | 318 | Y |
| F011139 | Metagenome / Metatranscriptome | 294 | Y |
| F065812 | Metagenome / Metatranscriptome | 127 | Y |
| F076161 | Metagenome / Metatranscriptome | 118 | N |
| F085736 | Metagenome / Metatranscriptome | 111 | Y |
| F097453 | Metagenome / Metatranscriptome | 104 | N |
| F103885 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103485_100092 | All Organisms → Viruses → Predicted Viral | 2743 | Open in IMG/M |
| Ga0103485_100245 | All Organisms → Viruses → Predicted Viral | 1928 | Open in IMG/M |
| Ga0103485_100654 | Not Available | 1223 | Open in IMG/M |
| Ga0103485_101713 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 766 | Open in IMG/M |
| Ga0103485_102418 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 633 | Open in IMG/M |
| Ga0103485_102564 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida | 616 | Open in IMG/M |
| Ga0103485_102918 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 578 | Open in IMG/M |
| Ga0103485_103324 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 542 | Open in IMG/M |
| Ga0103485_103671 | Not Available | 517 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103485_100092 | Ga0103485_1000926 | F103885 | MNNLLQSIKPKYIKLINESNYRFTSTKILAKLESSKFYGDLTISEIRDIYDMCNINALRVSAWDYRFGDNLLIDEND* |
| Ga0103485_100245 | Ga0103485_1002451 | F097453 | MYDLILRDVEEVFGASPWSSLNIKTYPVNYQGSKGSSTEYVLINVLPSSSRNYAYGVKKETTGLVAVKIFVKAGDGQGRLMAIANSLDTVLDNKTLSNGTKLGTSYLTVEGLDPANKSLYSASYII |
| Ga0103485_100654 | Ga0103485_1006542 | F001926 | VRHEDTPDINNPKTIKDTLEGDKLIKEVLNGGYNVHPVPPPNSETKERSARKYERKRTKIERLFTLGYTTSGDP* |
| Ga0103485_101713 | Ga0103485_1017132 | F001293 | MIRNSLICKLINVQASMKENNEKKIKNEDEISKLTKAPPKDTAALDNRSVLAKVNSQGSGT* |
| Ga0103485_102418 | Ga0103485_1024181 | F005505 | MHHLEGGTVNYFYFER*NISEFDEIRFYGVAPHWYFRPFMGLLTISPTHYEGLM*FGL*LILLAFLPLVHNFYNPYNRYLAVIPMQNSMIQSLGFLGFMLSLYCASSMLPCGRYYYEPEGGYVGNP*VKFSYQYCYLYMM*IMHHLDTVDHYLSQFSQPAKSKQTLNPRLGVTSYRTEAMKDYRY* |
| Ga0103485_102425 | Ga0103485_1024251 | F085736 | ENVYEDKSGSYIS*FYDAFLKEIQDA*Y*VNFVFLYFFYHHLTPATVSYYFFER*NISELDEIRFYAVAPH*YFRAFMGLLVVSPSHYEGLL*MGLFLALLATLPVIYNCYNSNNTYLPVIPMQSSLFQTLSFMFFMMSLYCVASMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLG*FLHHLDLIESYPFQFIQNFERRRPSYKSLAN |
| Ga0103485_102564 | Ga0103485_1025641 | F065812 | NICRKPIANKYCEGKMKSTLKRELEDLKSLRRKR* |
| Ga0103485_102918 | Ga0103485_1029181 | F076161 | LTPRNRRAEAHRFMKTINFSSRCPKTGFRAFAEKPAAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQITADPKERNNLLSSPTNPDAPTGKPV* |
| Ga0103485_103324 | Ga0103485_1033241 | F011139 | MGVLTISPTHYEGLMWFALWLILLAFLPTINTFYNPYNRYLAAIPMQNSLLQTTFFILFMMSLYCAASMLPCGRYYYEPEGGYVGNP* |
| Ga0103485_103671 | Ga0103485_1036711 | F009426 | EIRSAREIELAAAKVNKDVKPSSDMIPREILYTIILFMTTSPCVISAGAARETLFEGKADYCMIVCE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |