| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008613 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117987 | Gp0126503 | Ga0103914 |
| Sample Name | Planktonic microbial communities from coastal waters of California, USA - Canon-4 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Hawaii |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2865143 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 9 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000237 | Metagenome / Metatranscriptome | 1498 | Y |
| F003081 | Metagenome / Metatranscriptome | 508 | Y |
| F026579 | Metagenome / Metatranscriptome | 197 | N |
| F037503 | Metagenome / Metatranscriptome | 168 | Y |
| F040855 | Metagenome / Metatranscriptome | 161 | N |
| F054876 | Metagenome / Metatranscriptome | 139 | N |
| F068862 | Metatranscriptome | 124 | N |
| F097458 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103914_10166 | All Organisms → cellular organisms → Bacteria | 1470 | Open in IMG/M |
| Ga0103914_10352 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1186 | Open in IMG/M |
| Ga0103914_10368 | All Organisms → Viruses → Predicted Viral | 1177 | Open in IMG/M |
| Ga0103914_10510 | All Organisms → Viruses → Predicted Viral | 1080 | Open in IMG/M |
| Ga0103914_11700 | Not Available | 753 | Open in IMG/M |
| Ga0103914_12091 | Not Available | 700 | Open in IMG/M |
| Ga0103914_12672 | Not Available | 642 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103914_10166 | Ga0103914_101661 | F037503 | MHLGAASRLSFIEVELLIGLGGFTAYQPLTNSECYEIYSGVRACVLRSMSERERTQTIS* |
| Ga0103914_10352 | Ga0103914_103521 | F003081 | MPEPGLVVELREEMFNDTRFGVEVFYMHVRGVDSLMVLSYMHIMKKIYLKNYISAESDG* |
| Ga0103914_10368 | Ga0103914_103681 | F054876 | KHTPGNRYFYLIAFTITYSGIILAFWATLGYRIFGKAYAGLGPQQTLTRYRIRRVAVGMVAALFIQFANCTPEALVVYHFDSLFTYTPFEQFKHHKTRGYIWEPVTNGSIGFSRQSTRTTNKQGILMDQEEKADITHKSMWNNQVRYDECNQTRERELDNDEWNEEASFHEFGGVNQATLHARLVPFNLYMVPKWERQENKDFVLTLRKIRDEMDEKLLSSGNSYAQNASLPFSDEWDVELDYIINPSALAEKAESKGAYKDMQKFIRSTKWTSNHLHLGNGFDTEASYAKLHKLPAEVRLPWHYPAVKPLETKFLPPASRQTPEEIESLNQQIQANAEFLANEPDRIQPDIYRRLSEYRMSRKTTPRSFDAEREARLKAESEFRRPTYSIS |
| Ga0103914_10510 | Ga0103914_105101 | F068862 | QYLIFNTMLYKFFIALATLLVVNANAPSDRSVHISTNTDVDGLNGLNLNWLVTFKVDDYVVGFRYMLNELKKYPESRFAKNTFDVADGEATVDADVNVDDKSLSANVKWVSDKLVDGMKTTLNFNGNSNDKITSVGAAVNKTVDGHDVELKGTYNIGDSRLDANGKVVVDKTTAEVSYNSGDEDIRLQLSHNLDDSNSPKGSYSTKTGQVAYGWTRKWEGGELDGTYHPDNGGRAVLEWTDKGNQGDWKTRAEVPLANNEIGNSKVTIKREWKY* |
| Ga0103914_11700 | Ga0103914_117001 | F097458 | RSYKLPPIFLSLTFAALLPRRDIYALAFTPKLDLKHIISIDSWYKLLGSPILFDTYTLMVRRQTEPIVNCRGT* |
| Ga0103914_11861 | Ga0103914_118611 | F000237 | MIFHYFTPFYYIYLVKMHVLFCHES*DSDSGETTYEDKSGTYVS*FYDAFLKEIQDA*Y*VLYVYVYFFIHHFEGVTVNYFFFER*NIAELDEIRFYGVAPH*YFRPYMGILVISPTHYEGLM*MGLFLGLLAFLPLVYNLYNTFSKYVATIPMQTSILQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLG*IVHHLDLIDHYIFKFTQVLLRKLQSNKLTTTRA |
| Ga0103914_12071 | Ga0103914_120711 | F000237 | A*YYIYLVKLHVLFCHES*DSDSGENTYEDKTGTYVS*FYDAFLKEIQDAWY*VLYIYVYFFLHHFNGSTINYFFFER*NIAELDEIRFYGVAPH*YFRPYMGLLVISPTHYEGLM*MGLFLGSLAFLPVIYNVYNAMHKYVATIPMQNSILLTSAFIFSMLSLLCANSMLPCRRYYYEPEGGYVGNP*VKFSFQYMYLYLC*ILHHLDLIDHYIFYLTQTFLRKLTLDLNPS |
| Ga0103914_12091 | Ga0103914_120913 | F026579 | RQDMKMNLIVLMLAIMAISVSQPSFSKTVSEAKIIFADEEGEGSPTDEEPDCE* |
| Ga0103914_12672 | Ga0103914_126721 | F040855 | TNNELIKNGSEKNMELRPYYDRPTGQIKNYLSLIEQKIASNFPHWGRGSQGVWPKGDYGKGILRADQFSILGTYGQWLIPSSGSSGNQSSASVDSYG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |