| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008569 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117973 | Gp0126368 | Ga0103779 |
| Sample Name | Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-F-N |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Centre National de la Recherche Scientifique (CNRS) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 12098537 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1 | 1 |
| Not Available | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Surface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Champs-sur-Marne, France | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F034926 | Metagenome / Metatranscriptome | 173 | N |
| F043238 | Metagenome / Metatranscriptome | 156 | Y |
| F082866 | Metagenome / Metatranscriptome | 113 | Y |
| F100333 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103779_100649 | All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1 | 1494 | Open in IMG/M |
| Ga0103779_101930 | Not Available | 798 | Open in IMG/M |
| Ga0103779_103003 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 604 | Open in IMG/M |
| Ga0103779_104083 | All Organisms → cellular organisms → Eukaryota | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103779_100649 | Ga0103779_1006491 | F082866 | MHHQLPNRKRTLNLLLRKASGSGKICVLGQIEPQTPRLVVSFRQYLQVSILQSYSPQNPKPYGFPGDADVNARF* |
| Ga0103779_101930 | Ga0103779_1019301 | F043238 | MKTIAQTLRELKTVDLSESMLKDIELMEQINLRHAYHDALIRVPFEEWYESNFRK* |
| Ga0103779_103003 | Ga0103779_1030032 | F034926 | RWEVSTTEGESVMGYIEVYNIDKDGEWTDLDDIPMITVINCQLCNEPTEAHDIIIPAVIKDGILTAGTWQCRKCKAVNG* |
| Ga0103779_104083 | Ga0103779_1040831 | F100333 | QIGKMVYFTYKKLNICTVALLATVFAVLIAAMSVNWYQYKVEFSYPLVTASDSSLASSLYNYTETTFDMYGQTVNTQGANTKIVRTVQQTYAQLGASNVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILVIALLVVVASEIIAFLAF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |