Basic Information | |
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IMG/M Taxon OID | 3300008563 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117987 | Gp0126525 | Ga0103936 |
Sample Name | Planktonic microbial communities from coastal waters of California, USA - Canon-42 |
Sequencing Status | Permanent Draft |
Sequencing Center | University of Hawaii |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 2423443 |
Sequencing Scaffolds | 4 |
Novel Protein Genes | 4 |
Associated Families | 4 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 2 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Planktonic Microbial Communities From Coastal Waters Of California, Usa |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | Pacific Ocean | |||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002495 | Metagenome / Metatranscriptome | 554 | Y |
F003081 | Metagenome / Metatranscriptome | 508 | Y |
F026579 | Metagenome / Metatranscriptome | 197 | N |
F097458 | Metagenome / Metatranscriptome | 104 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0103936_10826 | Not Available | 717 | Open in IMG/M |
Ga0103936_10887 | Not Available | 704 | Open in IMG/M |
Ga0103936_11231 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 633 | Open in IMG/M |
Ga0103936_12249 | All Organisms → cellular organisms → Bacteria | 516 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0103936_10826 | Ga0103936_108263 | F026579 | PRQDMKMNLIVLMLAIIAISVSQPSFSKTVSEVKIIFADEEGEGSPTDEEPDCE* |
Ga0103936_10887 | Ga0103936_108871 | F097458 | YKLPPIFLSFTFAALLPRRGIYALADIQKIFIQNIIPIDSRYGLLGSPILLDNLVIPLILLISF* |
Ga0103936_11231 | Ga0103936_112311 | F003081 | MFNDTRFGAEVFYMHLRGVDTVFFFTYLHILKKIYLKNYVTAESDG* |
Ga0103936_12249 | Ga0103936_122492 | F002495 | SDNGSGKQKDWVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGASKNGNTKFVKVFAQVGVLFKGDDKFTGEMNYAEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF |
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