| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008066 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118189 | Gp0131421 | Ga0110927 |
| Sample Name | Freshwater microbial communities from catchments in Singapore - Site BH |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 108399707 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Catchments In Singapore |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities From Catchments In Singapore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → drainage basin → fresh water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Singapore | |||||||
| Coordinates | Lat. (o) | 1.3 | Long. (o) | 103.8 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003081 | Metagenome / Metatranscriptome | 508 | Y |
| F020860 | Metagenome / Metatranscriptome | 221 | N |
| F025679 | Metagenome / Metatranscriptome | 200 | Y |
| F029434 | Metagenome / Metatranscriptome | 188 | Y |
| F039134 | Metagenome / Metatranscriptome | 164 | N |
| F067528 | Metagenome / Metatranscriptome | 125 | Y |
| F080911 | Metagenome / Metatranscriptome | 114 | Y |
| F100449 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0110927_1004208 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae | 607 | Open in IMG/M |
| Ga0110927_1008306 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1300 | Open in IMG/M |
| Ga0110927_1042022 | Not Available | 691 | Open in IMG/M |
| Ga0110927_1044187 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 586 | Open in IMG/M |
| Ga0110927_1107856 | Not Available | 804 | Open in IMG/M |
| Ga0110927_1119701 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1398 | Open in IMG/M |
| Ga0110927_1151058 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 620 | Open in IMG/M |
| Ga0110927_1242046 | Not Available | 555 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0110927_1004208 | Ga0110927_10042082 | F080911 | MPNSHQSDFKRNLRREIAGYFIVVLCALPIRFWIMATLMDQEGRWAFLASRVFGYLSVGLITAVAVSKLRLRTKLILTFLLVAL* |
| Ga0110927_1008306 | Ga0110927_10083061 | F067528 | FFELAQSGGSEQNSVSIALKPLYEGTFFKLWSGGDREKVNQINSLSAAVERLKI* |
| Ga0110927_1042022 | Ga0110927_10420223 | F025679 | MTKTFKIGEYAVGGKIKVSIPKTLTNIKIDIIDSNYGTNKLVNQYIYYSFDRIRIERDLWQITTTYYTDMITSWINKNWQVELIKNNI* |
| Ga0110927_1044187 | Ga0110927_10441872 | F039134 | MFDHLIHIHQQFKQRIIGIELQRFKNVVTKPGALRYEIEAYNEYLLLTNAFALPIGTRIISDTNSLEILSSQNGLEGLEEFSGLVAIELPANTQEYPNIEFIQIVKE* |
| Ga0110927_1107856 | Ga0110927_11078562 | F020860 | MNITKAKTLAEGGYALYSIDPKTKTETQVGYMGENLDPKGWLPEGVKIENS* |
| Ga0110927_1119701 | Ga0110927_11197013 | F039134 | MFDHLNHIHQQYKQRELGIQLQSFKTVVTKAPKLRYEIEAYNEYLLLTNVSVLPIGTRIISDTNSLEITTAQNALEGLEEFSGLIAIELPEKVDTYPIIEFIQIVKE* |
| Ga0110927_1121107 | Ga0110927_11211072 | F100449 | MLCQLVCVDRRYQRMNCFNIREIQSILKRKFFTDLINTHDHRLLLNKTAMGLRFKTNNINSMHSNMFVFYNYGIEFASKIRSTNYFFNDK |
| Ga0110927_1151058 | Ga0110927_11510581 | F003081 | MFNDTRFGAEVFYMHVRGVDTIFVLSYIHILKKIYFKNYITAESDG* |
| Ga0110927_1242046 | Ga0110927_12420462 | F029434 | LDKKYTFGVWLDIDAEDEEQALRLFDNVIKNSFVKDSYCFEWKEVE* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |