Sample 3300007918

3300007918: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_2

Overview

Basic Information
IMG/M Taxon OID	3300007918 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118143 \| Gp0131534 \| Ga0111545
Sample Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_2
Sequencing Status	Permanent Draft
Sequencing Center	University of Liverpool
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	153784363
Sequencing Scaffolds	34
Novel Protein Genes	34
Associated Families	30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4
All Organisms → cellular organisms → Archaea	2
Not Available	10
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002151	Metagenome / Metatranscriptome	589	Y
F006143	Metagenome	380	Y
F008247	Metagenome / Metatranscriptome	336	Y
F013592	Metagenome	270	Y
F016621	Metagenome	246	Y
F018557	Metagenome / Metatranscriptome	234	Y
F018944	Metagenome / Metatranscriptome	232	Y
F025033	Metagenome	203	N
F026198	Metagenome	198	Y
F032176	Metagenome / Metatranscriptome	180	Y
F032702	Metagenome	179	Y
F034976	Metagenome	173	Y
F035352	Metagenome / Metatranscriptome	172	Y
F037736	Metagenome / Metatranscriptome	167	Y
F040945	Metagenome / Metatranscriptome	161	N
F043481	Metagenome / Metatranscriptome	156	Y
F044219	Metagenome	155	Y
F049307	Metagenome / Metatranscriptome	147	Y
F060461	Metagenome	133	Y
F065557	Metagenome / Metatranscriptome	127	Y
F066800	Metagenome / Metatranscriptome	126	Y
F073724	Metagenome	120	Y
F080201	Metagenome / Metatranscriptome	115	Y
F080568	Metagenome / Metatranscriptome	115	Y
F080660	Metagenome	115	Y
F085858	Metagenome / Metatranscriptome	111	Y
F085971	Metagenome / Metatranscriptome	111	N
F096823	Metagenome	104	N
F097405	Metagenome / Metatranscriptome	104	N
F103182	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111545_1000944	All Organisms → cellular organisms → Archaea → TACK group	7554	Open in IMG/M
Ga0111545_1003240	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	3782	Open in IMG/M
Ga0111545_1004402	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	3150	Open in IMG/M
Ga0111545_1004704	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	3035	Open in IMG/M
Ga0111545_1004915	All Organisms → cellular organisms → Archaea	2957	Open in IMG/M
Ga0111545_1004940	Not Available	2947	Open in IMG/M
Ga0111545_1005586	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2732	Open in IMG/M
Ga0111545_1008011	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2216	Open in IMG/M
Ga0111545_1011156	All Organisms → Viruses	1827	Open in IMG/M
Ga0111545_1011653	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1780	Open in IMG/M
Ga0111545_1013356	Not Available	1644	Open in IMG/M
Ga0111545_1015784	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1494	Open in IMG/M
Ga0111545_1018083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1377	Open in IMG/M
Ga0111545_1022602	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1213	Open in IMG/M
Ga0111545_1022822	Not Available	1206	Open in IMG/M
Ga0111545_1023266	Not Available	1194	Open in IMG/M
Ga0111545_1029559	All Organisms → Viruses	1037	Open in IMG/M
Ga0111545_1029707	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1034	Open in IMG/M
Ga0111545_1031267	All Organisms → Viruses → Predicted Viral	1003	Open in IMG/M
Ga0111545_1031503	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	998	Open in IMG/M
Ga0111545_1033579	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	961	Open in IMG/M
Ga0111545_1037821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	896	Open in IMG/M
Ga0111545_1041698	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	845	Open in IMG/M
Ga0111545_1044730	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	809	Open in IMG/M
Ga0111545_1048800	Not Available	766	Open in IMG/M
Ga0111545_1054709	Not Available	714	Open in IMG/M
Ga0111545_1060693	Not Available	670	Open in IMG/M
Ga0111545_1061566	Not Available	664	Open in IMG/M
Ga0111545_1064407	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	646	Open in IMG/M
Ga0111545_1064708	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	644	Open in IMG/M
Ga0111545_1067566	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	627	Open in IMG/M
Ga0111545_1072184	All Organisms → cellular organisms → Archaea	601	Open in IMG/M
Ga0111545_1073285	Not Available	595	Open in IMG/M
Ga0111545_1082884	Not Available	549	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111545_1000944	Ga0111545_10009445	F103182	VNGDKEVTKDHTKMTKIEVYKDYGVFSSQSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFVWLCRQPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFPPEVDIANPYAKLVEPESLEGGKFKQSFKRIDSKNEEQN*
Ga0111545_1003240	Ga0111545_10032405	F032702	LTKVDVIEKTYLLVVKMVDFQRNKPLKNVNVKVFRLETEPITPDQWAENLKNSAPFKRLILSANTDTTGVVTAELPEGTYEAKIQQYGLRKVCELTQNVEVLFTGPKKHWWQRP*
Ga0111545_1004402	Ga0111545_10044027	F066800	MATAKTRDFEVFETITANAAGNNKSIDLNTFINVADMEAFGLLAIEVGINATETTPQTSTFQAQIALQDLATGFISHADFDSLYLTYKNVLTGFEEESLSLGDVADVRYIPGGILQLRADRMSGASDVELYVRITGKIAKLSAADYMSLALTKSLSA*
Ga0111545_1004704	Ga0111545_10047046	F066800	MASAKTKDFEVFETIIANAAGNVKTIDLNTFVNVAEMEAFGIEAVEIGINATETTQSTSVYQAQLALQDLSAGFINHADYDSLYLTFADVPNGFEQESLSLGDVKQIRYLPGGQIQVRADRLTGAADVDLYVRITGKISKLSASDYMALALTNSLN*
Ga0111545_1004915	Ga0111545_10049153	F018557	MAEPKDGRPIFFPENLVLFGNLALFAWIVLDTAAFLLYDINAGIAFFIVALIAIYGVLHFIGCLRPCYNCIKCTHGMGRLAALYFGKRILKDYKYSYKLPTAIIFTIFIGAFPAAFALYSTATDFTVIKAAVFAVLLTITIYSGLTWRTKKRKPTQINENVQAQSVQS*
Ga0111545_1004940	Ga0111545_10049406	F044219	VGHPIMAKAVTREFEIFIETVADTGADNTALDMMDYVDIADNQAFEIHEVSLVLDPTEAFPAADVEARFQLADANITTFVSHADRASLYVARQTFDSATLGMFHQESFSSITPLIVSKTLFLRNVCSTGTLDYTLRLKGRIVTPSAKDYMALVLTQTGNLA*
Ga0111545_1005586	Ga0111545_10055864	F018557	MAEPKNGRPIFFPENLVLLGNLALFLWIVLDSVAFLLFDITAGIVFFVATLILIYGLLNILGCLRPCYNCIKCTHGMGRLAALYFGRRIFKDYKYNYKLPTAIFYSLYIGAFPATFALYSAVTNFTVIKAAVFVILLVFTIYSALTWRPKKRRTQPTAPEKPSANVDAQTAS*
Ga0111545_1008011	Ga0111545_10080112	F025033	MNHKKKRNRAIPIHITMPQTLLDDIDDQMSHKSSRSKWIRGACDLKLGKDVTQVADLTNIQLVNVLRNRCNYEGPGEAILKSLLEILSESS*
Ga0111545_1011156	Ga0111545_10111564	F025033	MDLDMRDLLLWHSFGRGGTMNRRIKRNRAVPIHITLAPSLLDEIDAQLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLVNILRNRHSYDGPAEAILKSLLEVLSE*
Ga0111545_1011653	Ga0111545_10116532	F060461	LIRERKTLTKDEETVREARRTYRDGIKKAWDIYTQDNLMVKEAKKTLDSAIDEAYKLCLPEHGERMAQTEYEEATKLYFKTLYKVHRKFADTIGQIWSVFIKDMETFRSPI*
Ga0111545_1013356	Ga0111545_10133561	F073724	MFDAMILKREIGKECKLDVQILETLNDGLVLRLVENRVNRDSLAFITDFVNKHDLNMILDNGVYFISKQILTPSEPIYLSE*
Ga0111545_1015784	Ga0111545_10157841	F035352	MNKYETKPLLTADDEEYIMLLETSQEFEKQKTNKTARENYGTAPEIVLRNHLLTRKLNLSLNPDVIIEGSKIKNGLLLLKNGVDPNLKSYLPDNVKIVIDVKNNSAGCKELKNGKLEDPNKAQRLRFNELEALTNVKNYAVVVLSETLLPPKGPFKWRFKEEAIGKQNCKVFTLVARQVYPSGGLYLKANIEKMLQNAQMKKTEEFEKLIKYLQNI*
Ga0111545_1018083	Ga0111545_10180831	F026198	MEIEIAILVAGVLIMVGGIVGGGAIYSGLVKLAEAIKKQK*
Ga0111545_1022602	Ga0111545_10226022	F043481	MPLDINLERGVRGFNIVRKECPNCNAELIFKIHKNEIHDVGGDGLFYPEENVVRCKVCMSTFKYKTKNTDEPTKQ*
Ga0111545_1022822	Ga0111545_10228221	F049307	MMLTPDEYMSLMRLISSERESEGSSLADRDETPSPPVKKRSRSARRADKMLSMAFKQANARYRKKDGSLRAGRTQAD
Ga0111545_1023266	Ga0111545_10232662	F080568	MAATPSIKVVKSFTYRGATRRWSNRYHFNGGTPPDSAHWTTLSDAIVTAEKAALVNVNTIVQTIGYAAGSEVPVFTKTYSTAGTYAPGSGTQAPGDCAAVVRYATAARTSKNHPVYLFNYYHAPWMTPGTPDTLLAGNVTVLNTYAAIWIGAGFSDGATSYNRAGPNGATATGVLIEPLISHRDLPR*
Ga0111545_1029559	Ga0111545_10295591	F008247	MATKKTSMFTLTERVTVSAAGTDTFATIDLGSYVDVGDRQALQVHSVDFIFQGTTADADLTSDLGNGNEFHVQVTDLNRGGLVFANDRALVASGSLGVDADGGRDRVADLYPDNYGKGSDDGRFVVNDQLYITAHTTNQIAACNVTVRVNA
Ga0111545_1029707	Ga0111545_10297072	F013592	MMRIDMSLAPELVWLEEVLFEDSVVPLTTLAKFHPLVRIPVIAYQSADIVATELATYTLQEGVVGALNLYTPEIRRYEETALVGMGGMRI*
Ga0111545_1031267	Ga0111545_10312671	F006143	MQEETPIEEKKTPTTKFAEWLMARQEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAWLWV*
Ga0111545_1031503	Ga0111545_10315032	F032176	MISVTAQSMTPPKGVGMAKDQGIFRTTTGDMGVLKGIDIAKMSADKTISVGLWGFMTSSEKLGWMNELIAVVEFEALDPMWQDFNIKIYEWT*
Ga0111545_1033579	Ga0111545_10335791	F016621	MALEDWNWRLEADRQDMAWDCAACSTAWAMRAVGRSVSEQDVIDGLGPGRISPSLGLLDASGAGLVSYLAEQGISAENNPDASWQEVQDAAGHQPVLVGGRAWCHWVAVRLGSDLIGRPDLAALLLMNPAPGYMGVDQVLYADDYARLGTFSAVWFTGW*
Ga0111545_1037821	Ga0111545_10378211	F085971	KMLIRLEQSFIESAEKLNDRFSEQDMEEVSEAIEANYEKIRLIMLEQEKSKDKSKPTLLELGNIGSRFFGFNIYYNDDVDDVPISIRELIPTISPVRLDLMATTKTTKSADPNSTYLKAAQVYDDGSMKAKYYAEAIREDEGIRPP*
Ga0111545_1041698	Ga0111545_10416981	F002151	LSLIACARVGKFVRATADTDWETLANLTGDIAALKRTCQTLNNRLNGMNKATIPQEQIIQQMLEHQNVEQIRRNG*
Ga0111545_1044730	Ga0111545_10447301	F037736	VPCRVQLDGLQILWLLANPLWTHGIGESGSKTITSWLLMGAAAANHIWWLNTNPFTGLLLHLNSYRILHLPFFHSNVCLF*
Ga0111545_1048800	Ga0111545_10488001	F040945	QSIGENLLDALCIKYSSQSPGLIIYDDRLKANIIGEFSVNEFIRVHQSSDPVVRRQYFEVQDIDQISYRSLTHNTRIGDRYIPIVARIIPGTALPLLMGRDFRDDHAESPAQQKQVNELNHPRIYFFKREKTSKPRLTLKQLERIHRDGNHPDFTEMTQECTRLGHKVDKAVELKVSRVIQECQLCLNKNRLFSHGQGQKYNTSFNTDIMVRRERVIEDDYYTHLFTVECMDTGYNVAKYINQYRYEDKYEMIND
Ga0111545_1054709	Ga0111545_10547091	F097405	NRLFSHGQGQKYNTSFNTDVMVRREKVIQDDYYTHLFTVECMDTGYTVAKYINKYRYEDKYEMINDVVLNLWVYGESGMGFGCPKNAFFTPDPRDNIRKLRIAGKKHSLIWAGSDLNPGKFQLSDCLDFTPYPGMTGSPPCNRRIGEKVFVINNMIRPDTGYAPQQLVYGTTSGLPGLFEIPRNPNSEFARSLYRIIKGIQRTEDRAAPIPLGVDFPYEPGDKVHFLGPKGRIGHGRI
Ga0111545_1060693	Ga0111545_10606931	F080660	MPEKKRSREEFEAYLKAMLDQDYPKVKYQSPDAWH
Ga0111545_1061566	Ga0111545_10615662	F085858	LKDFREVIKLKIVPTTFEFRCTLCGFKIVNYDRHFGLIQMNEHVLEKHAEEVQSLDKEELYSRKPDITLDSD*
Ga0111545_1064407	Ga0111545_10644071	F065557	MPLREQVSDIFNEILRIAKVNADFTINNFQIINETIVEVEGDASKTQDALNAMSPLVATKVLDTMTPNEVRALASLPPIQGGDVIASNQPQIPQA*
Ga0111545_1064708	Ga0111545_10647081	F018944	MENDKTKPTSDIKDKSIRRYKVLKRPSTDTDNPMVKVLESIISGLEGSLGKRTYICGNPDCGTLIIFHTREPRPIVCHRCGSELDWEGEYITTIRTCPKCNKEYDTTANYCPFHTPPVSLIEKELEKHGSSFL*
Ga0111545_1067566	Ga0111545_10675661	F080201	LKCRKCEGAIVYPEGLSGEKICSKCGLVIDEAPTFKSYTQWNPEWYSNWNEQDSETLKEWLTTLRALSCQLNIPNFPYREEAARTIRTHNKVLFRSQKLTKNKRATLAALMHLILKEYDKMRPIKEISKELSLDNKLVMKQIWIIGKTLNGKKGQLKIQRKT
Ga0111545_1072184	Ga0111545_10721842	F034976	KMSEAKPVRCQKCGKALGYVTVLVKGLLGVQQRLQNVKLVDVCMECFQNK*
Ga0111545_1073285	Ga0111545_10732851	F097405	MVRRELVSNDDYYTHLFTVECMDTGYTVARYVNKNRYDTKYEMFNDVVLNLWVYGETGMGYGCPKNAFFTPESRDNIQKLRIEGRKHSLIWAYSDLNPGKFQFSDCLDFTPYPGMTDRIPCNRRLGEKVFITNNLIKSDTGYTPQQLVYGTTSGLPGLFEIPRNP
Ga0111545_1082884	Ga0111545_10828841	F096823	LLIIDNNMKKVLTFLMMTIMIVGVTTTISQTHEVYAENKAKDLCSQYDGEWNNGKCKIKNDEDKTDYEDELCDDPKDTKKYPKICKDN*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007918: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences