Sample 3300007906

3300007906: Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_1

Overview

Basic Information
IMG/M Taxon OID	3300007906 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118143 \| Gp0131540 \| Ga0111482
Sample Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_1
Sequencing Status	Permanent Draft
Sequencing Center	University of Liverpool
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	150403350
Sequencing Scaffolds	41
Novel Protein Genes	45
Associated Families	40

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	5
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Saccharicrinis → Saccharicrinis carchari	1
Not Available	11
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	6
All Organisms → Viruses → unclassified viruses → Virus sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F000754	Metagenome / Metatranscriptome	906	Y
F002151	Metagenome / Metatranscriptome	589	Y
F002374	Metagenome / Metatranscriptome	566	Y
F005882	Metagenome / Metatranscriptome	387	Y
F006143	Metagenome	380	Y
F007838	Metagenome / Metatranscriptome	344	Y
F008247	Metagenome / Metatranscriptome	336	Y
F013592	Metagenome	270	Y
F017668	Metagenome	239	Y
F018557	Metagenome / Metatranscriptome	234	Y
F024560	Metagenome / Metatranscriptome	205	Y
F024682	Metagenome / Metatranscriptome	205	Y
F025033	Metagenome	203	N
F025653	Metagenome / Metatranscriptome	200	Y
F026198	Metagenome	198	Y
F028047	Metagenome	193	Y
F028081	Metagenome / Metatranscriptome	192	Y
F029768	Metagenome / Metatranscriptome	187	N
F030288	Metagenome	186	Y
F030418	Metagenome	185	Y
F031306	Metagenome	183	Y
F031307	Metagenome	183	Y
F036103	Metagenome / Metatranscriptome	170	Y
F038920	Metagenome / Metatranscriptome	165	Y
F043408	Metagenome	156	N
F046309	Metagenome	151	N
F048645	Metagenome	148	Y
F048675	Metagenome	148	Y
F051533	Metagenome	144	Y
F059009	Metagenome	134	Y
F063346	Metagenome	129	N
F073597	Metagenome / Metatranscriptome	120	Y
F074896	Metagenome	119	Y
F077264	Metagenome / Metatranscriptome	117	Y
F080660	Metagenome	115	Y
F088780	Metagenome	109	Y
F096272	Metagenome	105	Y
F098703	Metagenome	103	Y
F102576	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111482_1000023	All Organisms → cellular organisms → Archaea	14599	Open in IMG/M
Ga0111482_1000434	All Organisms → cellular organisms → Archaea	6858	Open in IMG/M
Ga0111482_1002283	All Organisms → Viruses → Predicted Viral	3763	Open in IMG/M
Ga0111482_1002874	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Saccharicrinis → Saccharicrinis carchari	3409	Open in IMG/M
Ga0111482_1002900	Not Available	3401	Open in IMG/M
Ga0111482_1002971	Not Available	3369	Open in IMG/M
Ga0111482_1003463	Not Available	3169	Open in IMG/M
Ga0111482_1003629	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3104	Open in IMG/M
Ga0111482_1003901	All Organisms → Viruses	3006	Open in IMG/M
Ga0111482_1003941	Not Available	2991	Open in IMG/M
Ga0111482_1005094	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	2658	Open in IMG/M
Ga0111482_1005886	All Organisms → cellular organisms → Bacteria	2476	Open in IMG/M
Ga0111482_1006422	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2371	Open in IMG/M
Ga0111482_1006431	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2370	Open in IMG/M
Ga0111482_1006448	All Organisms → Viruses → unclassified viruses → Virus sp.	2366	Open in IMG/M
Ga0111482_1006546	Not Available	2348	Open in IMG/M
Ga0111482_1006926	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2290	Open in IMG/M
Ga0111482_1007134	Not Available	2260	Open in IMG/M
Ga0111482_1008455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2089	Open in IMG/M
Ga0111482_1008702	All Organisms → cellular organisms → Archaea	2057	Open in IMG/M
Ga0111482_1009779	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1950	Open in IMG/M
Ga0111482_1013861	All Organisms → cellular organisms → Archaea	1633	Open in IMG/M
Ga0111482_1014960	All Organisms → cellular organisms → Archaea	1573	Open in IMG/M
Ga0111482_1016439	All Organisms → cellular organisms → Archaea → TACK group	1494	Open in IMG/M
Ga0111482_1017706	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	1436	Open in IMG/M
Ga0111482_1018852	Not Available	1389	Open in IMG/M
Ga0111482_1020231	All Organisms → Viruses → Predicted Viral	1338	Open in IMG/M
Ga0111482_1021088	Not Available	1308	Open in IMG/M
Ga0111482_1022159	All Organisms → cellular organisms → Bacteria → Proteobacteria	1275	Open in IMG/M
Ga0111482_1022950	All Organisms → cellular organisms → Archaea → Euryarchaeota	1251	Open in IMG/M
Ga0111482_1024712	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1202	Open in IMG/M
Ga0111482_1026171	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1165	Open in IMG/M
Ga0111482_1036073	Not Available	970	Open in IMG/M
Ga0111482_1051517	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	779	Open in IMG/M
Ga0111482_1069748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	638	Open in IMG/M
Ga0111482_1074723	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	609	Open in IMG/M
Ga0111482_1075154	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	607	Open in IMG/M
Ga0111482_1083253	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	566	Open in IMG/M
Ga0111482_1087593	Not Available	546	Open in IMG/M
Ga0111482_1089488	Not Available	538	Open in IMG/M
Ga0111482_1097503	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111482_1000023	Ga0111482_10000236	F018557	MAEPKNGRPIFFPENLVLLGNIALFLWIVLDSVAFLLFDITAGIVFFVATLILIYGLLNILGCLRPCYNCIKCTHGMGRLAALYFGRRIFKDYKYNYKLPTAIFYSLYIGAFPATFALYSAVTNFTVIKAAVFVILLVFTIYSALTWRPKKRRTQPTAPEKPSANVDAQTAS*
Ga0111482_1000434	Ga0111482_10004343	F025653	MQKSGREVIGMSDPIKYFETKLKEMSLTELQAYKKRLDDSIQQKIMQTVPNEQIAPLILYRGILEHEIKTRTNQR*
Ga0111482_1002283	Ga0111482_10022832	F077264	MVLNKIWNLRADSAWIDVVKVQAINSGRSSPGAFVRDLVWTLSKNPTIQSQVIDAMRGVKYGQSR*
Ga0111482_1002874	Ga0111482_10028742	F007838	MRTLLTFLLFLLTCEIDGQVPAGLTVVVKNPAWQAEDAAKESLEKADRIRQITTLTEQVNTQKESLQAIRDATEKLRKINRKVANYHNLELAIAQVSDSYTRVLGSLKAINEHNCFKPSEYHMLSESMMGLLSQTSYSITTLTVVLTDNFSEMSDGERLFNMNQAIKELRENIGVINSAIIEVEILDNQRMQLRTLNYINSIFK*
Ga0111482_1002900	Ga0111482_10029002	F030288	MVVDPVAPIDREQNERIVWCERLLYLIVLLQFPQLATLL*
Ga0111482_1002971	Ga0111482_10029716	F043408	MKVRKEVSLTVETAQIATQMDNFSQWVRIGLRSYGLQEDIATQAMRVVRYRKACLHLASTLIDYATQIDPDYKGNVEEIIAKALNQTTLEEFE*
Ga0111482_1003463	Ga0111482_10034634	F006143	MEKETPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVTVAGTTVADYVLMAWLWI*
Ga0111482_1003629	Ga0111482_10036292	F024682	VEDELVSKLKAKIGKSLPPMFAGMAENMLESNKAVIITWLKENKDLVKQVIES*
Ga0111482_1003901	Ga0111482_10039014	F025033	MNRRIKRNRSVPIHITLPPALLDDIDAQLSHKMSRSNWIRGACDLKLGKDVTEVADLTDIQLVNVLRNRFNYEGPGEAILKSLLEILSESS*
Ga0111482_1003901	Ga0111482_10039017	F048645	MQGLLGKRGVDWMSDLWMDLVPLKWFEFKHEISAFAFCQECDLYGEKQWNCDPEYPAVLIDAPWPVFPGKERWIWMCESCFYGEVLVEVSQ*
Ga0111482_1003941	Ga0111482_10039414	F026198	MEIEIAILVAGVLIMVGGIVGGGAIYAGLEKLTEAIKKQK*
Ga0111482_1005094	Ga0111482_10050943	F073597	METGNFALQGNQFIAGGNKFVMRKRKKPTQNKPELYLIQLQPFKYISSLFPAGEQGLYTFDYERQVYILKTEQAQVIITEEV*
Ga0111482_1005886	Ga0111482_10058862	F102576	VVNSQGAAESGGITMNDLLMLEKYFPEGNLEGGIELANRLDWGLSVQMAGDGYVVLSGDEPILRVEQKDALQSFYYGLGLAYAILPKEVFDSLEKTLKDL*
Ga0111482_1006422	Ga0111482_10064222	F002151	MEYVNYIALGCSIAAFALSLIACARIGKFVNATADTDWETLANLTGDIAALKRTSQTLNNRLNGMNKATIPQDQIIQQMLEHQNVEQIRRGG*
Ga0111482_1006422	Ga0111482_10064225	F024560	VTDIAPALNLFGIGGNQQRMAPQAAQTVIRQAPDETSQSGEILGANLGMAPALFQAGRNFLRTPGGQTALGFGGAALGAAFAGDGGSAPRITRKMKSDVRRIYMMAGMDPNVTAQILNNMGTYPRMNFNASLVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNSVCKPTTRRAPMRRAAPKAVQLIKN*
Ga0111482_1006431	Ga0111482_10064311	F002151	NVDNYCMEYVNFIALGCSIAAFALSLIACARVGKFVRSTADTDWETLANLTGDIAALKRTCQTLNNRLNGMNKATIPQDQIIQQMLEHQNVEQIRRGG*
Ga0111482_1006431	Ga0111482_10064312	F030418	MGFFDALHTVVERVVPTAVGFVTGGPAGAVTSLAGVEQAKRTEKAIERAEYMYQQDPGLSQGFSGYQPSMASAGSGSFFGNLGQSIGSFGRDVGGFVSDIAPALNLFGYGGQAQRTNAGTAMTVDVGRPQETAQSGEVLGANLGLAPMLFQGARGLLRTPGGQTALGFGAGAAGALLAGDGQIAPRITRKMKSDVRRIYMMAGMDPNVTAQILNNMGTYPRMNFNASLVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNSVCKPTSRRAPVRRTKTSTATTLIKN*
Ga0111482_1006448	Ga0111482_10064483	F005882	VRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGQIKNVGG*
Ga0111482_1006546	Ga0111482_10065463	F059009	MKDDQLPDCYVQANDDYYVCYVMEYDDQEHMDIEEREHPGFEMMVIELIKTCRICGQSDVSYCSDWNPFRPKSKG*
Ga0111482_1006926	Ga0111482_10069264	F002374	MNQVLLYAGLILASVSFFLCVYACLRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTDKLGG*
Ga0111482_1007134	Ga0111482_10071343	F000713	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAEATGTYSGNVAMNFTVNNAEFSRDVAVSEKVTGEAFGWNNTGYVLNDMITTGQVRNRPVVTFTNNDAASVDIEVAIFIGG*
Ga0111482_1008455	Ga0111482_10084552	F063346	MYSTIYNKDKATRPPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFDVQIVASEITTKPSYHVEITYTGQEF*
Ga0111482_1008702	Ga0111482_10087022	F088780	MNLIKKFTWGLTVVAMAPLCGLENKERNRRLEERLKRIENRDLA*
Ga0111482_1009779	Ga0111482_10097793	F080660	MPKKKLSREDFEAYLKAVLDQDYPKVKYQSPDSWRLRASKESGAT*
Ga0111482_1013861	Ga0111482_10138612	F096272	MEDLKKLQCKHKVAIAEINVFILQNPNWAASIIRKALESEMYIEFCLCCENFDKCCKKLGAIRRETSLGCICNEFLNQEHSEANRPRLRAYFKKVTVLLNI*
Ga0111482_1014960	Ga0111482_10149601	F031306	MKDFRCPICGGPTEKIWENSTRTRYGMRCTKGHMKTGGKSDGSLEYTTILVPSEELIE*
Ga0111482_1016439	Ga0111482_10164391	F031307	MSKILTYFGFKNGKLVSVLHSINGDLKKAVDCTYYITEPQEVEKQIEKWKQDNSE*
Ga0111482_1017706	Ga0111482_10177061	F029768	VKLGGKEMTDTMTETAVAVNALYSEQELKKDSQVSVRLESGLYEALETQTQMWGFKSISQTVRAILTFYFLPVAYELELKNRSISEHKEFLKEKQAEGFSLEQARANYFTFQVMEYLEFLEQAMVMARHSLKFMESTSDKMNGILKETVNKIEQAMKELEQVAE*
Ga0111482_1018852	Ga0111482_10188523	F008247	MATKKTSMFTLTERLTISAANTETFATIDLGSYVDVGDRQALQIHSVDFIFQGTSPGVSLPITTISSSGLVTCQVTDLNRGGLVFCNDRALVASGELNADTDGYLSMNTDLYPDNYGRGSDDGRYVVNDQLY
Ga0111482_1020231	Ga0111482_10202311	F013592	MLAPELVWLEEQLFEESQVPLRILSTFHPLVRIPIIAYTLADPIATELAQRTIEAGGVGAIDLFTPEIRRYEETALVGLGGMKI*
Ga0111482_1021088	Ga0111482_10210882	F031307	MSKIRTYFGFKNGKLVSVLHSVNGDVKKAVDCNYYITEPHEVEKQIEKWKKENS*
Ga0111482_1022159	Ga0111482_10221591	F048675	MKVNEEHMDGNQVLFFEHYAAAQSLKSAWTRLASTYGCMMIVLTRKTLSIKPHWFAKWLISLLRLDLFHEIPITSIIGVMEMGRWVSYGKVELHFQTEEGKDRKIVLYMKKYREFIDEVTRVIDR*
Ga0111482_1022950	Ga0111482_10229503	F098703	MVKKAHIVIKLLQEDSNASVIQIEERIKNEARIPLCKEIEKVSVEDVDASYVNLKNHGVSSNVAKNLMDLYTE*
Ga0111482_1024712	Ga0111482_10247122	F036103	MKTWKHIILASGIATCLIGAYLMAFGEPILGLNHTGIATVMGITGIGIITTANKTPFLGKKEEK*
Ga0111482_1026171	Ga0111482_10261712	F028081	MGQEEALERLQKTRRENEEAFLKAKAFLDGFRARGQLSPKDDEFLVLMEFVIKGFKNHGSDIITAFENQVRFTEALTNMQSKMTNLEEQIRQLRITLDKMYHDK*
Ga0111482_1036073	Ga0111482_10360732	F038920	LLTEIFTDEQLINFYTEDGYLVAVDYPKNEVKLHTIDCMLADPISSVGVKPSKARENKTGEFWYSKNRKEANLKAEEIAKKKAYTYVVCPICNR*
Ga0111482_1051517	Ga0111482_10515172	F000754	LVMNFSINNTDFSRDVAVSEKVTGEAFGWRGGYVLNDTVTTGQVRNRPVVTFTNNDAASVDLEVAIFIGG*
Ga0111482_1069748	Ga0111482_10697482	F074896	MKKTSKMKKFLLIASIILLLAFVTTNLLSIAFNIHLKDAYAVENPFNSFLVSFLFEKYLPQESYYDGPQNNPSPLIEPFKMLLLGVGLIFLSLIGRKTFKS*
Ga0111482_1074723	Ga0111482_10747232	F051533	MNENEPMQERKLIGTKSLKELAIYLSGVKDGKGNLLPLGTIVIDDLWDAIRYIDGDTGFIAPRDKEV*
Ga0111482_1075154	Ga0111482_10751541	F017668	LNKGILYEELIPIEQLSYKGYNTPELANAKIKKILDQVKDEMPPFTEKWVNTEYDNPDWKATCEAMNERTLAREKWFIKWFGE
Ga0111482_1083253	Ga0111482_10832532	F030288	KVDEEMSIPLAPVDQEQNERIVWCERLLYLIVLLQFPQLASLAM*
Ga0111482_1087593	Ga0111482_10875932	F031307	GMSKIRTYFGFKNGKLVSVLHSVNGDVKKAIDCTYYITEPQEVEKQIENWKKENS*
Ga0111482_1089488	Ga0111482_10894882	F026198	LEIEIAVLVAGVLIMVGGIVGGGAIYAGLVKLAEAIKKQK*
Ga0111482_1092828	Ga0111482_10928281	F028047	KLKFVEMMEPEMKGVVFRNDWHLLGLKQIDSLFNELFSDVAIQPGIEIVNRLKMLEVCSLEILEDRSRSTVYRIRQTDEVFQIFQPGGDLFRYTTEDYFQKQPSDELVKEYVKKAPVFKIEKVSDHRDVIHHLRPPKFRALFVDRTFDKVEWIDQPPEDISQIPKLMRKMGAFY
Ga0111482_1097503	Ga0111482_10975032	F046309	WDTVATLTGDIGTIKKSIQTLNNRINGMNSPKLNDELLQYAIKQQNGAMTPPSTKLGG*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007906: Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences