Sample 3300006899

3300006899: Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um

Overview

Basic Information
IMG/M Taxon OID	3300006899 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114451 \| Gp0111482 \| Ga0102523
Sample Name	Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um
Sequencing Status	Permanent Draft
Sequencing Center	Chunlab, Inc
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	260452717
Sequencing Scaffolds	34
Novel Protein Genes	36
Associated Families	29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
Not Available	14
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella variicola	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → Leucobacter chromiiresistens	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles
Type	Engineered
Taxonomy	Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Nanji, South Korea
Coordinates	Lat. (^o)	37.3132	Long. (^o)	126.828	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F006895	Metagenome / Metatranscriptome	362	Y
F007965	Metagenome / Metatranscriptome	341	Y
F011936	Metagenome / Metatranscriptome	285	Y
F016970	Metagenome / Metatranscriptome	243	Y
F022365	Metagenome / Metatranscriptome	214	Y
F024534	Metagenome / Metatranscriptome	205	Y
F025488	Metagenome / Metatranscriptome	201	N
F030082	Metagenome / Metatranscriptome	186	Y
F032274	Metagenome / Metatranscriptome	180	Y
F040370	Metagenome	162	Y
F042607	Metagenome	158	Y
F042865	Metagenome / Metatranscriptome	157	N
F045749	Metagenome / Metatranscriptome	152	Y
F046955	Metagenome / Metatranscriptome	150	Y
F048174	Metagenome / Metatranscriptome	148	Y
F048548	Metagenome / Metatranscriptome	148	Y
F049646	Metagenome / Metatranscriptome	146	Y
F051872	Metagenome / Metatranscriptome	143	N
F068773	Metagenome / Metatranscriptome	124	N
F074867	Metagenome / Metatranscriptome	119	N
F076004	Metagenome / Metatranscriptome	118	N
F078624	Metagenome / Metatranscriptome	116	N
F082613	Metagenome / Metatranscriptome	113	N
F091607	Metagenome / Metatranscriptome	107	N
F093751	Metagenome	106	N
F095393	Metagenome	105	N
F100051	Metagenome / Metatranscriptome	103	Y
F105181	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102523_1000611	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	10806	Open in IMG/M
Ga0102523_1008703	Not Available	2350	Open in IMG/M
Ga0102523_1009189	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
Ga0102523_1013250	Not Available	1869	Open in IMG/M
Ga0102523_1018093	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1576	Open in IMG/M
Ga0102523_1023175	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1376	Open in IMG/M
Ga0102523_1027050	All Organisms → Viruses → Predicted Viral	1266	Open in IMG/M
Ga0102523_1030373	Not Available	1188	Open in IMG/M
Ga0102523_1030799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1179	Open in IMG/M
Ga0102523_1031330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33	1169	Open in IMG/M
Ga0102523_1039466	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1033	Open in IMG/M
Ga0102523_1043762	Not Available	978	Open in IMG/M
Ga0102523_1044567	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	968	Open in IMG/M
Ga0102523_1055501	Not Available	863	Open in IMG/M
Ga0102523_1056897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella variicola	852	Open in IMG/M
Ga0102523_1066455	Not Available	785	Open in IMG/M
Ga0102523_1072381	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	752	Open in IMG/M
Ga0102523_1074864	Not Available	739	Open in IMG/M
Ga0102523_1076112	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	733	Open in IMG/M
Ga0102523_1077456	Not Available	727	Open in IMG/M
Ga0102523_1081853	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	707	Open in IMG/M
Ga0102523_1082516	Not Available	704	Open in IMG/M
Ga0102523_1085436	Not Available	691	Open in IMG/M
Ga0102523_1086115	Not Available	689	Open in IMG/M
Ga0102523_1092576	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	663	Open in IMG/M
Ga0102523_1099445	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	640	Open in IMG/M
Ga0102523_1101482	Not Available	633	Open in IMG/M
Ga0102523_1115509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	593	Open in IMG/M
Ga0102523_1123432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → Leucobacter chromiiresistens	573	Open in IMG/M
Ga0102523_1125016	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	569	Open in IMG/M
Ga0102523_1132770	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	552	Open in IMG/M
Ga0102523_1149184	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	521	Open in IMG/M
Ga0102523_1149995	Not Available	520	Open in IMG/M
Ga0102523_1154468	Not Available	512	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102523_1000611	Ga0102523_10006111	F022365	DMQPDELTELKKLVKEFVTRMTNIENEVSLLKEDRKALIEEFGTKLDLRVLNAALKVAKIKSSVDRKDTFDMFMEVLEEEAT*
Ga0102523_1008703	Ga0102523_10087035	F032274	VAGVVSLLKRELGLDKTMQVSFDFTEQTEIVKREKRKPFEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFDLIKKMPLAVEKKIKGKICVIPSGLKTDEELICRVRELRKQASKIGKELDALFFKTNPEWAKFYEYTD*
Ga0102523_1009189	Ga0102523_10091891	F049646	MAQNTNKPLKPALRKTAVISSCDCLVGFLSGERVSKSTIDYEVKRISDIQPKFKEYGLLNGEPLSPKQIVDNRRGYLSRFAYCPYCGEKINWKQVLSNCL*
Ga0102523_1013250	Ga0102523_10132503	F046955	MAAPRQMTAKTLNALKGWPQPAAVDFHTEFADTITDEVLPGSVVHLNSAGQYELGVGTDSVMPLFMFNGSNDPDVKNEAGDPATEKGVWVPINPTGQAMALVAIGAYELVSTAFVDGSYEPNDPLTSAKTGGSAGLLVGGTLYTDMIVGIVSRGVVDNGYGYDALAFWPFPV
Ga0102523_1018093	Ga0102523_10180931	F048548	MKSVLIVENSTQSLVKENSNVKENSKSDDLILNGIFTEFGIKNRNDRIYTADKFLPCLEEMNERISSMGAVFGEFDHPD
Ga0102523_1019490	Ga0102523_10194902	F095393	MNHKAEYEAIKKQIAECEQALKHRCIECSNFNKKKGECLKHGFVPVEFVYQKNECEGFDYLPF
Ga0102523_1023175	Ga0102523_10231753	F002045	MDFFCVYCKTRKKFDKYLKVNKIKNKYIIDLKKIVDEEDVNFSQDKTYLKILIFNKIQQAVERDKDIYYIPDFENEFSIEKLLNLKKMLGTNNFNVLIFYNEFRKNQDIIDDVFSNLAKFSNSQIIRDY*
Ga0102523_1027050	Ga0102523_10270502	F068773	MTTENLNLSELGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPL
Ga0102523_1030373	Ga0102523_10303735	F093751	MNTVSEMVKKLGSQEYVAFALGVSSRTLRYWIASNQISRASRLDFLKMLKKAGYKMTLKELNDLQPTKKDVSK*
Ga0102523_1030799	Ga0102523_10307991	F074867	MSNRGIVELTLNGEVFELHPTFENLDKLETVLNKGAVGFLQNDLSSGMFKTGDVVSIIQVCAIPPRGAKRPSWWNREGIGRAVLHKGLLNCTRVVVEFLTKALTAGSETDIKTVGADEDDEKK*
Ga0102523_1031330	Ga0102523_10313301	F100051	MLERLLCAVLGHRYVVLRVLNHGARKVGCTRCNSHWAMHDGTRSFVRWDGEFEEFYAPGGILAQASGDVPPNAQLTGEG*
Ga0102523_1039466	Ga0102523_10394661	F016970	QDRMSKILNELAVYDWVPEIKLFVHNLTKSPEQRSNLLSGGKSETVYTIVEQVEDGHLVFLKDSWFLMTDDSIEKTLLETHIKGDERQKTLRSLQTAMQFASINESRIDFRISEYLTIGLSVNNKGSFFINEDELNEETSLENLFSSPIVPIVNRNFYPLLVEVANNIDSFVELDVVKRVSNLINPTLEVFAFNYKKNTYIYRCDERYGNSFFKYESALELVNEVRNELNYDLTFFYDNKLSKEIVAKKQLEDRERQISLKLEDVNFNISKIKGSIQILGSTNVLKEALLNLEKRRESLGLDLLAVKELQVKEIVKL*
Ga0102523_1043762	Ga0102523_10437621	F011936	MLSRDYTRLNDAIVKISESLVQLVVIQEQNKSIMQCIERQSSTIDNLDRRLDTIEVHMPALLELRTWALTGLGLIASAVLMALVALVIK*
Ga0102523_1044567	Ga0102523_10445672	F024534	MSNKESRIKSLPDVFMLDSGLVQFKYIQDISNANDVNFCVGMAGGHYTFGSPNQYDEFMDKYLTWLETRKS*
Ga0102523_1055501	Ga0102523_10555012	F042607	MTLRIIDNKKIDMTEDEWSMYQKIVKSYTSLTNKGEDLFIDLFETDDNGIIMFLKPPSKRQTSFEVFLFLMSIFQHQHLRLMHNQVDDICIQMKQKIVEIDTKLKDMVK*
Ga0102523_1056897	Ga0102523_10568971	F076004	VTPTIHQKHLSVHARIGGEFNSMNTENTVALSNRNGIQTFVQNIEFDRDGRHYDEPCLLMCRGFMGVKNMFVFPLCDAWTVREPEFFKATMQDAAATLFVSPTKNDEHVIGDMILHDIDTIIAWRPDDDATHDHALMQKEVERTGLLLKVNGQTLVDAR*
Ga0102523_1066455	Ga0102523_10664551	F045749	AGTLKTYLLNHKISEGFKSQGRAPDTESRQQMIQATISPEQCSVEDLINKHNCAVINGLILDITWLAKQCEIDGEMLPPTRTLAHILNDIGYQQIEGRRLKIQKTGNCHYIWHKNTRNNSSEDVKNIIRDFYKNNLDEVPF*
Ga0102523_1072381	Ga0102523_10723812	F030082	IENEQYNRSKGLKEKVYKVLEEHTTINFLNNRRKPSKIDFNNYYYLLVQNLSQEKFTNVELFNELSVYFSDNLFNMFKLLDNKWRNMIISELQDHIGKNKNSKEIKNRNIYVGTEVEFTHEDQIGDIKLFTGVVIKTIYEESTFIIDSYENLYEVNISSITKILNNSKSKYNLNKLNNIDFL*
Ga0102523_1074864	Ga0102523_10748642	F042865	MALRVPDYETFLAADDFNKRIWWSFMQSVVNDLPLNGNVSPEGTVRANKSCLYVESTGGSAVLWFNPNGNGSATGWIVK*
Ga0102523_1076112	Ga0102523_10761122	F007965	MGKKKEMRGGKRPFSGRKKADYETKTIAFRVRVEFVEPIKKMVKDYVSERLKGDA*
Ga0102523_1077456	Ga0102523_10774562	F078624	MKLCVHVRPRDDKQGWAVDVFDGRRAWTKTHLGESPLSKAEAHRLAHKLRDPKFYTARTK
Ga0102523_1081853	Ga0102523_10818532	F105181	MSAQDKKEQKTTELKDEFERIQESNKDLDISKYLAKKDDLPDLGEIQIYDYDADLTESTEKAMELLESLVDLYLGDSKKILEHPYIKNKLKEDAMVYAETIFLSKMTRKNFLT
Ga0102523_1082516	Ga0102523_10825161	F082613	VVAGPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLTALTASAFDTIDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0102523_1085436	Ga0102523_10854361	F032274	RKYPQQNLICIVSGWVLVAVDAKVRFGGKTMQVSFDFTEQTEIVKREKRKYLEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFDLIKQMPIAVEKKIKGKICVVPSGLKTDEDIISRVRELRKQASKIGKELDALFFKTNPEWAKFYGYID*
Ga0102523_1086115	Ga0102523_10861152	F011936	MRGNRCVFARRRRIRGLELSEQHEARLQNLENSHNMLVRDYTRLNDAIVKISESLTQLVVIQEQNKEIMSCIERQQSSIDKLDGRLDALEIQQPQLLELRSWVLGGFGTIIGSVLVAMLALVIK*
Ga0102523_1092576	Ga0102523_10925763	F024534	MIKQEFLERIKALPDVFMLASLVQFKYVQDISEPNDTNFKVSMAGGHYTFGTPSQYDEFMDKYLTWLERRKS*
Ga0102523_1099445	Ga0102523_10994452	F045749	QGRAPDTESRQQMIQATISPEQCSVEDLINKHDCAVINGRILDVTWLAKQCEINGEMLPPTRTLAHILNDIGYQQIEGRRLKIQKTGNCHYIWHKNTRNNSSEDVKNIIRDFYKNNLDEVPF*
Ga0102523_1101482	Ga0102523_11014823	F048174	DVQSHSEVVEALLKAEIERLKQDLDRLHRERDAFSRQCSVMAEENAVWEAESKRLTWMIQNHGRVEFEFSGDCYVTFILKNQFKATLGSDDTRVEIDRAMEMCK*
Ga0102523_1115509	Ga0102523_11155091	F091607	MSLELQISELNATIKTLNENILLLLGSKEQHSKVECSHVEPVNLGQTEQQTFLPEVATSSEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFDARKTGDLADNQINLCYSMIDQATKDD
Ga0102523_1123432	Ga0102523_11234321	F051872	IAQNEHKQRLDNVTQSIKQATIDQDFDAIDALLAERDKLMKAEPVAKQEEPLAIDDTNDDGETQEQLQAAAQKWIADNPWYNKLTQAGRDQAAKLEAEYRAKVDCTTEEALAYVAQEMGKDPIVAVLKGKLKSPDVTPRTSERPRVASASESSLDPASRNIYNKMISQGLLKTAAEKSAFIKDALGA*
Ga0102523_1125016	Ga0102523_11250161	F040370	DSYYHYSKNQWGFANTTDHTDLPPGADLPSGPGANPHLSPTNPLSTRLFIGENYRYDGIYYPAILVKSGGGKYVPISINRDQGAVQYDNIIYEDGYGNQTSIRKPKSFITAGAWEGSIIIDVITRSLRSRDDLTELVAMCFTEITFDTLVDIGVIVKPISYSGTTESDDRNDKLFRQSLTLDIRTEWRR
Ga0102523_1126949	Ga0102523_11269491	F025488	NATATALYDIVKVSTSGSTADTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPEYLNQTYRSASTARVALVNYDPQVVLEAQEDGNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQISSATLAGSPGMFRLQQRSFAVDNAAIAGTNTKWLVTFNVHQFKATA*
Ga0102523_1132770	Ga0102523_11327701	F006895	YDNVFLRDLTVCVSDTFEGKVSWVNRFTKGDVEVKVPFYYSLTGDERFLLDSFADDIVSENRFTELNSDIIPRGHITLTGFNLRSDEFRNPNVWLRSVVEDNTEVKTMLRQLRAIPITVNYSISIMLKTEIDVFNCSQSILNTMWLYNFMYFEYNFLHIDAIMTIPDSKSIETVREKNLTSDN
Ga0102523_1149184	Ga0102523_11491842	F007965	MKKKKIQGGKRIGSGRKKADYETKTISFRVRVEFVEPIKKIVKDYVLERLQGDA*
Ga0102523_1149995	Ga0102523_11499951	F068773	MTTENFNLNELGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPL
Ga0102523_1154468	Ga0102523_11544681	F045749	FCVMYGRIQNESELFDYFGGRDAASDYFETLFSESEKHAGALKTYLLNHKISEDFKPQGRAPDTESRQQMIQATISPEQCSVEDLINKHDCAVINGLILDVTWLAKQCEIDGEMLPPTRTLAHILNDMGYQQIENRRVFVKKTNSQHYVWFKPSKKTDSDFAKSEVIDFF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006899: Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences