| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006887 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117429 | Gp0125121 | Ga0102491 |
| Sample Name | Combined Assembly of Gp0125121, Gp0125656, Gp0125657 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shell Corporation |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 85469608 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → Flammeovirga | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | UK (Newcastle upon Tyne) | |||||||
| Coordinates | Lat. (o) | 54.971158 | Long. (o) | -1.703654 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F048390 | Metagenome / Metatranscriptome | 148 | Y |
| F064732 | Metagenome / Metatranscriptome | 128 | Y |
| F074913 | Metagenome / Metatranscriptome | 119 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0102491_107470 | Not Available | 1656 | Open in IMG/M |
| Ga0102491_110644 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii | 1312 | Open in IMG/M |
| Ga0102491_110791 | All Organisms → cellular organisms → Bacteria | 1301 | Open in IMG/M |
| Ga0102491_111916 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → Flammeovirga | 1220 | Open in IMG/M |
| Ga0102491_135604 | Not Available | 595 | Open in IMG/M |
| Ga0102491_145252 | Not Available | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0102491_107470 | Ga0102491_1074701 | F048390 | MVRFVRTLQHRVTPQGRDFYALSIPPQVAEALELKDGGQVSICVNPVKKGTFEVTIKA |
| Ga0102491_110644 | Ga0102491_1106441 | F064732 | MEAAAEAALAAAPERCTMPPAQSAERHVKFPSSQMDQGPYIAAIATRSTSLQDPVPPGHPEDTN |
| Ga0102491_110791 | Ga0102491_1107913 | F048390 | YYGSNMVRFVRTLQHRVTAKGRDFYALSIPPQVAEALGLQAGGQVTIEVRPVKKGKFEIVLKPLSLGDNLNP* |
| Ga0102491_111916 | Ga0102491_1119162 | F074913 | VARVFALVVRCRIIRLLLCSRVGKNRDTRREPPAEAGAGRGASHKTASLVTQLSRHGAPMTY |
| Ga0102491_135604 | Ga0102491_1356041 | F020363 | WRRVAVARVFALVVRCRDVMLFVYSRVGKNRDTRRETPAGAGAGRTADHLTVLFSQKVLAVRKANDIYRPVMLRHFILLKRSG* |
| Ga0102491_145252 | Ga0102491_1452522 | F020363 | MNFVKKLSDRLPLTFGGMWRWRRVAVARVFALVVRCRVMRLSLYSRVGKNRDTKRESPAGAGAGRTADHLTFLFSQKVLAVRKANEIY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |