| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006719 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0092401 | Ga0031667 |
| Sample Name | Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0728 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 122713255 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Sordariaceae → Neurospora → Neurospora crassa | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -31.83 | Long. (o) | 6.86 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006550 | Metagenome / Metatranscriptome | 370 | N |
| F016280 | Metagenome / Metatranscriptome | 248 | N |
| F025846 | Metagenome / Metatranscriptome | 200 | Y |
| F030053 | Metatranscriptome | 186 | Y |
| F041212 | Metagenome / Metatranscriptome | 160 | N |
| F042932 | Metagenome / Metatranscriptome | 157 | N |
| F049945 | Metagenome / Metatranscriptome | 146 | Y |
| F050311 | Metagenome / Metatranscriptome | 145 | Y |
| F076161 | Metagenome / Metatranscriptome | 118 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0031667_1001517 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 887 | Open in IMG/M |
| Ga0031667_1012623 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 950 | Open in IMG/M |
| Ga0031667_1013105 | Not Available | 997 | Open in IMG/M |
| Ga0031667_1018191 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 812 | Open in IMG/M |
| Ga0031667_1237048 | Not Available | 878 | Open in IMG/M |
| Ga0031667_1280932 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Sordariaceae → Neurospora → Neurospora crassa | 591 | Open in IMG/M |
| Ga0031667_1313777 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium | 630 | Open in IMG/M |
| Ga0031667_1327033 | All Organisms → Viruses → Predicted Viral | 1035 | Open in IMG/M |
| Ga0031667_1336706 | Not Available | 1260 | Open in IMG/M |
| Ga0031667_1343937 | Not Available | 715 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0031667_1001517 | Ga0031667_10015172 | F076161 | PRNRRAEAHRFMKSINFSSRCPKTGFRAFAEKPVAKSLLLLQFGGQKMPPQRASIPNRLTAWTVPQIAADPKECSNLHSSPTNPDAATGKPV* |
| Ga0031667_1012623 | Ga0031667_10126231 | F025846 | TVNLKAVPMVNLTVAMDLVSMAHGHVTVMVTALMAQMKLTVLLHHVKIRVYGIVVMDNVSQHHMYVMAQVNSVTQAGLQTVLMVQMKA* |
| Ga0031667_1013105 | Ga0031667_10131052 | F042932 | ITKSDEEEQISYENTVAKSIDTLADVVQSIAESQQGVEKAISTIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAVEDEPEEVVEESRPEMVTKSQHEFSTETPRPGSAIETVDKSFTKDFSPILKDAREQGYEGLNIVAQNILSGKYYKPTPEEIGGF* |
| Ga0031667_1018191 | Ga0031667_10181912 | F025846 | PAVLMVNLTVVPMVVHMVSASMAHGHVTAWLIAMTAQTKLTVLLHHVKTRVSGIVAMANVFQHHMYVMAQVNFVTQAGVLTVLMVQMKA* |
| Ga0031667_1237048 | Ga0031667_12370481 | F041212 | KLFVRDGRAMSKAPFWHKNFCLEMFEDRQTRPFETRIWSFVAPIEEDPVGSRVHVFEDIRIT* |
| Ga0031667_1280932 | Ga0031667_12809321 | F016280 | ITSTEVDTRNVFDHASAELAKHGLDAPPTELKKLLDVLQFKPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALAIEDEPKPETTGLAALQKTANEAAASLDKEADVTLDDAALAAKLQAEEYGNHDVVLEAVTGRGIKLDSNTLHSLLRILYCRPARFVQLGLVEDIKAARQAFKLGGKACANEWFRNKG |
| Ga0031667_1313777 | Ga0031667_13137771 | F050311 | MKALRTKICAYAIALLASIGFATPSLGGSSEFAGIFIAAHAELNVIAIDGTHTDGQTHATDQLGVTQGTIGGFAPTGGLEIGFNLPLGDTFFVTLGYADGGGKTAAIAKSKSPDGNSDVTIHASNPSWFYIAPSISVFDNSAVYFKIGQ |
| Ga0031667_1327033 | Ga0031667_13270331 | F030053 | HVRGSSIEIKTNLGGGIKINAQRGDNSKGGRDIQIRTEKAGKQMMKIDINTEKTVNDNEIKLKLHDSVEIDEDSMLYRKIVRNYRLLTPFSKRTGDFEIYVNKQSKNVLLNKFYVKGEVKKDTQTVMKALLTTNEKPYKMSLYMPALLNKIYRNMDNYEVTVNHQPGQLLEVKANGKKFTGFKIARVGGGNNREFEINGKKLGSGDYELTDNSFKTKITIADGNWIEPKITWQGRLPNNAREAESFFLKNSLTADVKGSKRHFNADLDWTMDKPDFDFSTPLNCKMNFNMAGEGPNWGTYSISRDVKAAVANKVIKLAVNGDASFTKGVFAKISPVTTDVDLKY |
| Ga0031667_1336706 | Ga0031667_13367062 | F006550 | MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFSEVNGTPIYNYNSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEEYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASIGPRDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRLITG |
| Ga0031667_1343937 | Ga0031667_13439371 | F049945 | FSTDITIGDNTGFGSPYTGLALAGEDWDLSLNLSDGNVNVEEAKYNWAISDAITATFGSQAEPYGIAWGSHRPSGNSFVSVPRDHSISNGVGVSAAAYGVGANAFYGDDNYWAARASYDVSALGINSTVGLSVNSSDAQLIDASTNGSALGIPYESSFEYDLANDGAYWLRGVVTPDIAKGAYGIIGYNSDEEVVYGIGYNASDNFKVATELSGDGDTVIRFSYSF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |