| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006712 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0092427 | Ga0031693 |
| Sample Name | Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1602 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 88391986 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldalkalibacillus → Caldalkalibacillus thermarum → Caldalkalibacillus thermarum TA2.A1 | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -11.24 | Long. (o) | -172.63 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000086 | Metagenome / Metatranscriptome | 2462 | Y |
| F000371 | Metagenome / Metatranscriptome | 1220 | Y |
| F001679 | Metagenome / Metatranscriptome | 653 | Y |
| F030135 | Metagenome / Metatranscriptome | 186 | Y |
| F063613 | Metatranscriptome | 129 | N |
| F081237 | Metatranscriptome | 114 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0031693_1006278 | Not Available | 749 | Open in IMG/M |
| Ga0031693_1009120 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldalkalibacillus → Caldalkalibacillus thermarum → Caldalkalibacillus thermarum TA2.A1 | 2230 | Open in IMG/M |
| Ga0031693_1169750 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | 534 | Open in IMG/M |
| Ga0031693_1202480 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae | 503 | Open in IMG/M |
| Ga0031693_1223953 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | 618 | Open in IMG/M |
| Ga0031693_1228678 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 577 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0031693_1006278 | Ga0031693_10062781 | F030135 | PKNREELATLSSFTDIGHATFVGCQFPDAILPGGEAIDLVAGPLN* |
| Ga0031693_1009120 | Ga0031693_10091202 | F001679 | MSWRQEAMKGVEGCDKPGEAVKRALIPGFPNYRMLNT* |
| Ga0031693_1157224 | Ga0031693_11572241 | F000086 | TMELQEDVGEKVRIIQDAIKTEADLLPQGDQVPKDAQDYKDELKRIEEYVLDLQKRVMTTCEHFSEDVKYWAEYKTGVREFRPWLEASESKAKEGLSKPSTLDEANALFAAVNNFDQNCLKYRKICENAETASLKMTTHKEADDEVKELKDRYAKVKAVSDEWMKKADTLLKEWKLLDNTVNELNSWVAKDRGESSEANFSLEKMESTLGELKNIFKQKEKLVEDL* |
| Ga0031693_1169750 | Ga0031693_11697501 | F000371 | LYARCAKECDNFSEDVKYWAQYKTGIKEFGPWLTNAEQRSLEGLSKPSTLDEANAMFNTVMEFDKACLKHLKILEEAAAAANHMTTHKEADDEVTALKERYGKVKQVSDEWMKKGDTLVKEWKLLDNTVNELNSWVAKDRGAETEQAFSLEKMESTLGELKNIFKEKERLVENL* |
| Ga0031693_1202480 | Ga0031693_12024801 | F081237 | MSRTVLDLEEWELVLAKMHRHHANVAQEVAIIVQTIRKEMKSELVPLAEEKATYGKIVKSAIRELWALEYEIEEIQTEFAKGIGSIDIGNLTDDFVEDVMLQSKPLQGILMAIRIRQKTKMEEIKTKYWEVIKDLEPLKQPRPP |
| Ga0031693_1223953 | Ga0031693_12239531 | F000371 | DVIKKNIAVEEDLLPQGEKVPQDAQDYKDELKRIKDFVDNLYQKVMKECDNFSEDVKYWAEYKTGIKEFRPWLEKAETHSTDGLAKPQTLDEANAMYANVKSFDDGCLKHLKILEDAAAAANKMTTHKEADSEVAELKARYEKVKLIADEWVKKVDTLVKEWKLLDNTVTELNSWVAKDRGAEGEQNFSLEKMESTLGELKNIFKE |
| Ga0031693_1228678 | Ga0031693_12286781 | F063613 | LLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |