NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006614

3300006614: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ05 time point



Overview

Basic Information
IMG/M Taxon OID3300006614 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114916 | Gp0124980 | Ga0101439
Sample NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ05 time point
Sequencing StatusPermanent Draft
Sequencing CenterAustralian Centre for Ecogenomics
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85133347
Sequencing Scaffolds21
Novel Protein Genes26
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2
Not Available3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus1
All Organisms → Viruses1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameExploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F000754Metagenome / Metatranscriptome906Y
F001416Metagenome / Metatranscriptome699Y
F002151Metagenome / Metatranscriptome589Y
F005684Metagenome / Metatranscriptome393Y
F011904Metagenome / Metatranscriptome286Y
F016657Metagenome / Metatranscriptome245Y
F019643Metagenome / Metatranscriptome228Y
F030440Metagenome / Metatranscriptome185N
F035364Metagenome172N
F039665Metagenome / Metatranscriptome163N
F040846Metagenome / Metatranscriptome161N
F041247Metagenome / Metatranscriptome160N
F058118Metagenome135N
F058965Metagenome / Metatranscriptome134Y
F062730Metagenome / Metatranscriptome130N
F067707Metagenome / Metatranscriptome125N
F078740Metagenome / Metatranscriptome116N
F087146Metagenome / Metatranscriptome110N
F090463Metagenome / Metatranscriptome108Y
F095424Metagenome / Metatranscriptome105Y
F099230Metagenome103N
F105107Metagenome100N
F105867Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101439_100409All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2630Open in IMG/M
Ga0101439_100942All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'78976Open in IMG/M
Ga0101439_102646All Organisms → cellular organisms → Archaea → Euryarchaeota35852Open in IMG/M
Ga0101439_102747All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria19137Open in IMG/M
Ga0101439_103878All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2689Open in IMG/M
Ga0101439_104869Not Available10221Open in IMG/M
Ga0101439_105818All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2096Open in IMG/M
Ga0101439_107035All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4096Open in IMG/M
Ga0101439_107135All Organisms → cellular organisms → Bacteria → Proteobacteria8005Open in IMG/M
Ga0101439_109637All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2303Open in IMG/M
Ga0101439_109638All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2011Open in IMG/M
Ga0101439_110569All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium3082Open in IMG/M
Ga0101439_110681All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus6190Open in IMG/M
Ga0101439_111403All Organisms → Viruses2256Open in IMG/M
Ga0101439_112183All Organisms → Viruses → Predicted Viral3205Open in IMG/M
Ga0101439_112593All Organisms → cellular organisms → Bacteria5123Open in IMG/M
Ga0101439_113631Not Available2184Open in IMG/M
Ga0101439_114713All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2821Open in IMG/M
Ga0101439_114775Not Available2938Open in IMG/M
Ga0101439_114909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2434Open in IMG/M
Ga0101439_115246All Organisms → Viruses → Predicted Viral2808Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101439_100409Ga0101439_1004091F040846MRPAYCVDCNKKPIKIKDADIQGGSVGMNVEDHICPECYWVMNTSSWERFRAGFLDGTFTVEEFENWERKTYMNGTFVSETLNQNN*
Ga0101439_100942Ga0101439_1009426F087146VIDASETSSIGYGDVHRPRRRRSAMTSVAAVGVISFSVGILLILAGGRSSDEHARVGGILNWVFRGRVRPEVTFTLDASWIDQRLRAANPDFFTSPISDGFIVRHNYNSHLFFPRKNMVKMTRIGLRKWTVTTRDVNYEYGFALGNEAGEILREIGPWVTTKQHGPKSGNGEFMDACTVTFWPYRNRLIPQKPNAAPGPLNVTACFASCTKTCELPNAPTPLASLDASQYTGGNTWGNAQISCNLGSQTTYNSTMNGMYINGNRQSVITCPYEIGPARYPNLTMEVVFQLDTTYDPTASYGWIFGHDDGGYDRSFIISDTRFGGGIGSGIGAVYDSGAATPSNGVWHHGLAVFRQGIVDGSYTALDGAISPVKATANNNEGEPDFTVGGLANDFGFPHEMKGWIRYFNFYDGALDESQIEAMYVRNTPWP*
Ga0101439_102646Ga0101439_10264613F005684VYDTEESPLSKMQVVRRKSESREGQLCNRNELGQGYDDPEKVRFPELSWNEQLHRSKSKQARMASTGPGRMHS*
Ga0101439_102747Ga0101439_1027477F105107MSNFFSYIYKHIFLRCFFISLLTLLVFFVLDFVISLITESSGFSMLQIQNTAIESFEGLLSYFEMIMLLSVLITLSIFKQANNIAILQSFGQSPLKISMIAACAPLILSFLFIGFSLLIPSNDVDTYPQWELEDQSISVLQKDKVISIDFSSNKINKVLSTTPNDLSANTEPSSVLQKMSSRTLSLPFATLALVLLASIFLFKHQRNFSISQSIFFGIAAGFGYKLISDLFYLGFRSFDLXXXXXXXXXXXXXXX*
Ga0101439_103878Ga0101439_1038782F062730MCDTYNMGTERPVGYRLVRVGVRGRVPTLRTRAPEDLTTRQKYDLRYREKHRAKLLAYHREYYRKKRTQ*
Ga0101439_104869Ga0101439_1048696F005684MPYGEDEGVGGSLTVPDTEESPLSKMQAVRCKPEVREGRLCNRNVPRQAYDDPERVRFPDRGWNEQPRWSKSKQARSASTGPGRMH
Ga0101439_105818Ga0101439_1058181F090463VKKKLNAFTVNTLSQAEVIILEAKTYKIKPILHFKNYLLKGFGSDFILTFQKILKSKFGNSSFKIFVDCGFDSSLSIRMATKKID
Ga0101439_107035Ga0101439_10703510F095424LKFIMKIFHYLILIFFTFTSSISLSKEYLNDTNDIDRLKIWEELRDTILPDSPIQDAFDYACLYLSINPDNLDVYKGGFVRYGKVNKKKIQGYIDLAESESMDLTDCNFSKD*
Ga0101439_107135Ga0101439_1071355F035364MLGLSKASKAKKVYDSIESQLSSIKDWANSDKLPKKMWIDPYMIGYFFKTVALAELITNRKPYSATPDQMIIKLCFEDHICPESFKDFEQNLFDLMDKELKAKKSGALKFDDLGNHISSNVEKDVDEFLLGNRHASRIIFLLGGVLKEEIIQKDHQILEAKKITEENKEMDEAAAKKLGLKSRNMLPFYLSKIYLKERIEKLSSN*
Ga0101439_109608Ga0101439_10960810F099230KEKIELLINKKNKNYEHLQKIFKTLILDEISPENFIKVYIKAKTKNDIVFFIRTMTDLFLSHKVNKFLSEGQSIKSARTQTVARLLCLSFGSPQKTDNENFKHLKKIVRENTKEMRI*
Ga0101439_109637Ga0101439_1096371F001416MPLVKKRIFLAAGATSDQVLAGTTYEYVDPNTVIRVAAAVDTAGTSATADTTMDFTVNNAEFSRGASV
Ga0101439_109637Ga0101439_1096375F000754FSRGASVSALVTGEPFGASENSNYVMNNMVTTGAIRNRPIITFTNTTAATRTIDVAVFIGN*
Ga0101439_109638Ga0101439_1096381F000754FSRGASVSALVTGEPFGASENSNYVLNNMVTTGAIRNRPIITFTNTTAATRTIDVAVFIGN*
Ga0101439_109638Ga0101439_1096383F002151MEYVIYTALACSIAAFVLSILAGARVGKFERATAETDWETLANLTGDIAALKRTAQTLNNRLNGMNKAVVPQEQIIQQMLDHQNVEQIRRGG*
Ga0101439_110569Ga0101439_1105691F039665MDYRTFFNKEEWDLLRAAPFNVQVLVSQADQDRELDEIGPLLDILMTYSGDPFVEEVFRDTLEATEESRLEVEPRVALDQVSLAVQLIKDNIANSTLAEGTLDIFCAQLLDIAEQTAAADLEGLEAEEDSIINLLKQKFS*
Ga0101439_110681Ga0101439_1106818F067707MAFLQNTAILVPLVAASVYGGVKVASKDFYPMINATLNHNTLYGIIILLHAMFGIAPVSELPERTKTITSSVWFKLLSLLVISFSATRDFEDAVLVLITFLGLVQLLRTKEERKKYPYIIA*
Ga0101439_111403Ga0101439_1114037F058118LKDYLLAMAIKLYSLEVLVDDLVYVGSDIRAKSQEDAVRILGIISGGEVTEDSEILSCEEKVLH*
Ga0101439_112183Ga0101439_1121833F105867MSFSERERFIYHAATLMTMQHLQVLSKSDLQKNLKAVQNNRCTSLTDKQVEEIFLDVEYEALAMMSDAQEKLEKSCAKRQGYKKREFAEDVQENFK*
Ga0101439_112593Ga0101439_1125932F000325MKTAKGNDKLGKENCVVVSRPVGDTCPPTCDFLGNGCYAEQLEKIYPSVRPAGMQNLITEKNKIRAMIVDCEKKGNDLRWHERGDFYKNGSELDIEYVDNILWACRSILQEGGKLPKMWAYTHIYDPKLSRILGKYITMYASVHNHDDVAKAKAAGFTLFAWCDSDEKVASKRPRGKKKADEWRSNLPKLVVLGDDKYITCPEIRRGRGVVTCTKTKKSVNCQLCVQGLANVLFPSH*
Ga0101439_112593Ga0101439_1125933F019643MAKYYIKTDSLELIFSTEKEPRDACITAIRELLPNDTYDEYMYCDERGYRGYDTADKMTKVFLTEDIMLDAGMKE*
Ga0101439_113631Ga0101439_1136311F030440NYVVYTLIGCNLLVIGLFIRAAVRVSKLESALRDMDWEALANLVGDVATLKRTIQKLNMRLNGMESADPTTVLARLPQLQQNVTPIDQQKIRGG*
Ga0101439_113631Ga0101439_1136312F058965MAFLGDFGKIFLGGANTGTVVGALTGSPTLGTVAQGGANLLSKVNTNRLDNVIGGSTARDAPTQTIPQESATSGTDREFLGFSDMEGGGFDPVYSQPQARVAPMQAQTIGVPAIIGQGLALGRGLGGMLFGGAAGIAAPMIIDQITGQPKKLRVTRKLQRDVKNAVMLLGPEAVAQQLGVGIDVVVFILQKKIRNDGPYVTRAAVRKTRQTVRKMKTLCDLYDDLRPAAKRRAPVRRAAASKVMQIKN*
Ga0101439_114713Ga0101439_1147133F078740MDESRRNFILGMSSAYAALSVSAATGTSIMLKSTNNVLEKKNINISDWKFSSYDGFDALSPAMIGSALSSFMLNNIEYLYSIIIVLITLFLLFAVGIPGYEYLLPYTEQYFIYS*
Ga0101439_114775Ga0101439_1147755F016657MSYRNIDQDERLLVMARRYWDDDDSLTEAQLNWVLKNEGYSQREIDNAISDYWSIHLQSNILLHYWVAPIILTVVMVVLVIYVHSLIMR*
Ga0101439_114909Ga0101439_1149094F011904MSFNPPEGILDIGNATLRVGKLEVAETTGLNQGLQNIVKNDLLITEKETYLANKTWGIKLPTAWVGEFDLKTHDSKYVEFNFYNEGSTSNALGYTLNFKDTTLTLKYDNGNSNLASETIPDVSTSTYKKVNVFFERGVIAVFIDGARVLYFKESDTYNSVHGHPGMASRVASTTGGSFVNIFIEEDGSDSAVKDLRIVNGRLISDKTSNVSFIGSLGVGVNNPKESLDIRGNMHFNRVSNVSQVSVDSNVVTEYTGPHDRPLRKYPEVVLTADDNLSTSGYKAS
Ga0101439_115246Ga0101439_1152463F041247MTNFYSIQADKMKFNLDMLVDMYKTIDQTKWVHRQDKLPQYWPIDENDTFDRNHEFYKLLKENIHADIDETRVYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVEKVEHTNNTPIIYSANYMHGTAKSLKNKNDRITLVVDIKFWFERVKIKYYEGTLFTNNKAFWSMA*
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