| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006444 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0111851 | Ga0068843 |
| Sample Name | Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000188-3 ISU MetaT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 63827262 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0266187 | Long. (o) | -93.6486594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041209 | Metagenome / Metatranscriptome | 160 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0068843_1033364 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 653 | Open in IMG/M |
| Ga0068843_1084009 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 925 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0068843_1033364 | Ga0068843_10333641 | F041209 | TIVLPGEKPYIVAEETSAYSKRFDMIACCVGDRVLLPKIFTPKERADAEVKGINGHMLLQFIDDVLAQAVEGLDRYPLTLVLDRAPIHRDLDSIRQAFRDRGSESIKDILLLPPNAAKRLSPLDNALFHDWKEECRKHCPVTLRTIERVMNDAWMKMKPGPHYRGSGITRTKDPYFDCPAPQEHQHGS* |
| Ga0068843_1084009 | Ga0068843_10840092 | F041209 | ELLPRVQAATGKQLSARTLRRYGKTELRARDKQSKKRTAAEMSPDLCEQIASMRRKLQKIATARILFLDETALRLSAAPTHTIVLPGEQPFVLATETSSYAARYDMIAVCTGAETLLPKVFTPAERKGAEVRGVNSAMLQQFIDDTLAQAVEGLDRYPLTLVLDKATIHQNVDAIRQAFHDRGSQAIKDILIMPPNAAKRMSPLDNALFHDWKEECRKRCPVTKKTVQRVMADAWNKLPARLLHSHYKHCGLVRGQDPYFDCPDPVGHQHGS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |