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Sample 3300006228
3300006228: Marine sediment microbial communities, 0.7 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC139
Overview
| Basic Information |
| IMG/M Taxon OID | 3300006228 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0116840 | Gp0121732 | Ga0082388 |
| Sample Name | Marine sediment microbial communities, 0.7 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC139 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Yale Center for Genome Analysis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 26796652 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1 | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Location Information |
| Location | Gulf of Mexico |
| Coordinates | Lat. (o) | 28.3 | Long. (o) | -88.2 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F061006 | Metagenome / Metatranscriptome | 132 | Y |
| F082866 | Metagenome / Metatranscriptome | 113 | Y |
| F082867 | Metagenome / Metatranscriptome | 113 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0082388_120372 | Ga0082388_1203721 | F061006 | GAEPFHQMDSIPIDRRTPEQKAKDVDDILNWQRNPRDHEGPETEPFRKIDQMLPQKAGQSPKARANDIDNTLTWLRNRGIEEPCDEDSPFQKVKSIPMPDSRSPQQKAKDVEDALNWVRNPKDSESSPETADFAKIDQLLPKKPGQKPQDRAKDLDNALSWVRNRGVDEPEFGGAEPFHQMDSIPIDRRTPEQKAKDVDDILNWQRNPHDHEGPETEPFKKIDQILPGKAGQTPEARANDIDNTLTWLRN |
| Ga0082388_120390 | Ga0082388_1203901 | F082867 | MTGGRKKGSRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNTLVLSVNPSLTDLSTTLATIYRQYRVTELSFTFQCSDAAGAYALAMQYVPQIGGTPSTLPTTLAEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYATRTGVTPIQDPDILTQGLMIFLTSTPATPIVAYMHVKFEFQTLEDPSFLAKLMHDDEEADTLVVPRAKADSLKSMTWNQL* |
| Ga0082388_123765 | Ga0082388_1237653 | F082866 | MHHQLPNRKRTLNLLLRKASGSGKICVLSQIEPQTPRLVVSFRQYLQVSVLQPYSPQNPKPSGFPRNAS* |
