NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005783

3300005783: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX



Overview

Basic Information
IMG/M Taxon OID3300005783 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114881 | Gp0119452 | Ga0078430
Sample NameDeep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX
Sequencing StatusPermanent Draft
Sequencing CenterCenter for Biotechnology (CeBiTec), Bielefeld Univeristy
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71398089
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → Viruses → Predicted Viral2
Not Available10
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → Collimonas fungivorans1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep-Sea Sediment Bacterial And Archaeal Communities
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → deep marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationFram Strait
CoordinatesLat. (o)77.950787Long. (o)-1.627126Alt. (m)N/ADepth (m)5500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F001728Metagenome / Metatranscriptome645Y
F005817Metagenome / Metatranscriptome389N
F011673Metagenome288Y
F020359Metagenome / Metatranscriptome224Y
F025751Metagenome200Y
F028812Metagenome190Y
F055187Metagenome / Metatranscriptome139N
F055778Metagenome / Metatranscriptome138Y
F062779Metagenome130Y
F077318Metagenome117Y
F077325Metagenome117Y
F079636Metagenome115Y
F082716Metagenome113Y
F084079Metagenome / Metatranscriptome112Y
F084258Metagenome112Y
F090405Metagenome / Metatranscriptome108Y
F093891Metagenome / Metatranscriptome106Y
F093897Metagenome106Y
F105207Metagenome100Y
F105217Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0078430_100238All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota8545Open in IMG/M
Ga0078430_100286All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis7752Open in IMG/M
Ga0078430_100532All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis5709Open in IMG/M
Ga0078430_100885All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis4406Open in IMG/M
Ga0078430_101036All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus4047Open in IMG/M
Ga0078430_108041All Organisms → cellular organisms → Bacteria1534Open in IMG/M
Ga0078430_108817All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1470Open in IMG/M
Ga0078430_110028All Organisms → Viruses → Predicted Viral1380Open in IMG/M
Ga0078430_110569All Organisms → Viruses → Predicted Viral1345Open in IMG/M
Ga0078430_111326Not Available1301Open in IMG/M
Ga0078430_113351All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon1201Open in IMG/M
Ga0078430_118954Not Available1008Open in IMG/M
Ga0078430_120861Not Available960Open in IMG/M
Ga0078430_128105Not Available824Open in IMG/M
Ga0078430_130070Not Available796Open in IMG/M
Ga0078430_137659All Organisms → cellular organisms → Bacteria705Open in IMG/M
Ga0078430_148797Not Available607Open in IMG/M
Ga0078430_149195Not Available603Open in IMG/M
Ga0078430_150603Not Available593Open in IMG/M
Ga0078430_154057Not Available569Open in IMG/M
Ga0078430_160556Not Available532Open in IMG/M
Ga0078430_164929All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → Collimonas fungivorans510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0078430_100238Ga0078430_10023810F093897VKPGFYISMGIAIIGLVVGFVLLYDIQQEKEVQNVWIQKIPTQCNDVWEEEYNEFYEINPEMRDATKEESKEFVEGIIKNHYEKQGINILDLSLELNVYEGVRCEACNCLGWDRLSIKIPEKELELISDSEGWEPKG*
Ga0078430_100286Ga0078430_1002865F055778MFSNVDLPEPELPTIKTTSPCSIESDTLSRAFTLFSPSP*
Ga0078430_100532Ga0078430_1005329F077325MSRKGNWTEKDEATIKAIVVNMINQKQMFRDLGETGELHDSFAIQNSREYVLGLFTGIVINLFANYWVSEHEAGLLPEDLAYLYHKIALFHDMIVEGLFE*
Ga0078430_100885Ga0078430_1008857F105217MESGLNTNKERNLLIDSIQYRIFYSEVNLDKIPTSISLDVFPNDKISAEIVIDGFLFYANGSLDLVFAEINKKLSLGLASNQINPLDIIQALETKHTDEAMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYENRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDDPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEILKPLYPLDSNLVSK*
Ga0078430_101036Ga0078430_1010362F082716MIDKKDFRQMPFTFIIAPILLVALTSVVAITYGEMIEEKELIVTLSCPDLKEYTENQLIESKLYFGHDAYLNYAKELYRDFC*
Ga0078430_107343Ga0078430_1073433F084079MATRQTTFTGFDGNGYCVGDRVQIHPATDLWMRGARYGVVVGSSLTSSDRVKVELDRIPGRTFAGSEDTFKGV*
Ga0078430_108041Ga0078430_1080413F093891MYCSKTLFWRFGIAGTALLAAIAVYCLVRIHPPELLTPFQSTILILAGQAGLFGSAPSLLYIFAIGLIVGTFASTPASARTQCLIWLSLALLLEISQHPLIAEPLISWLADTLFVSTWEVIEPYWKWGVFDPLDMIATAVGGLAALILLTYFPVG
Ga0078430_108817Ga0078430_1088172F105207VKLINSIRASMLLGKGHKFLENGRYQEALEKALKAKSLKLEEQFEWLCHSIEGKSRYHLGDKENALPSLRRAQEILASKLEKEKESKPLRNIMNDITRYIEKIEHGDT*
Ga0078430_110028Ga0078430_1100282F077318MIANIIKTLQSNEFYGAGTYTELAKGKNEYVTTWKGFVNKCKRVWH*
Ga0078430_110569Ga0078430_1105693F005817MRSNLLSRLKPEFKQGLEDNKTRYPASIDDLEFVLGQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
Ga0078430_111326Ga0078430_1113262F020359MAARKTGQKSSTEFWSKVLSAPKVRRILENRGFSPEGFRKDYEADTSRGPRSPKKPDRATMDAVEMFQELGDFEALKTALGTKSAAVANSALRRVLQFKAKGGVKTIRRRAGALPISPPP
Ga0078430_113351Ga0078430_1133513F093897DIQQEKEVQNVWIQKIPTQCNDVWEEEYNEFYEINPEMRDATKEESKEFVEGIIKNHYEKQGIDILDLSLELNVYEGVRCEACNCLGWDRLSINIPENELELISDSEGWEPKG*
Ga0078430_118954Ga0078430_1189543F055187MRVVNGNVIKSPADLVGLKPFKDAKLLRHEAMERMKRHIERKLKQSREEARLAQPYVRSEDAPSWDSWLG*
Ga0078430_120861Ga0078430_1208611F001728MNCIELKETDKKDHYRLFVNGVDIHGEHERSTWRHLIEIIDNKIYNY*
Ga0078430_128105Ga0078430_1281051F079636AVTIAGDTQVYGFDLSVNDSLVMPVRKEFEAHDDPTLLRQQKQGFFGWEEVGFALLDSRMVALGVIDRS*
Ga0078430_130070Ga0078430_1300702F011673MNKQSKILPICLQPRILAAVSFIHKSPDKEIGLERINKVRRKLSDREMLYVLSLLVFDQLLDMVQDSDEFKNLVPIKRTIH*
Ga0078430_130070Ga0078430_1300703F000423MKINKAIFYIKYYAKKHDCIIERKATLDENCFEGHHKKFGYPYKKYIDVWATEEINNGEPQYRTASKKWEINNEQTI*
Ga0078430_137659Ga0078430_1376592F020359MSVPKRTGGRKAAEEFWSKVLAAPKVKRILEKRGFSPDAFQRDYEADTSRGPRIPKRPSRSQIDAVEAFQRSGDFEALKRALTTESSAVANSTLRRVVQFTALGGVKTVRRQPTV*
Ga0078430_148797Ga0078430_1487971F025751MDSETRMWMRLHNLIDEDNWELIVYIYRVNANGRKITPYLAKWNMHAGLLDSIRDEFGTGEYHLMIRDGKTMVFTGTIGVARPLRR*
Ga0078430_149195Ga0078430_1491953F028812RFMNPDIDNVIRQTLGDALAAGFDHIGQTVLAVQAVQIARPDMTDADVLAAVNLVQQE*
Ga0078430_150603Ga0078430_1506031F020359MAVFKQIGGRKGSEEFWSKVLAAPKVKRILEKRGFSPEAFQRDYEADTSRGPRTPKRPARSQIDAVEAFQRTGDFESLKRALSTESSAVANSTLRRVVQFTALGGVKIVRRQPTV*
Ga0078430_154057Ga0078430_1540571F090405MNFAISTGVLLVFLLAGVAAADPPDCARSLRQINHYEEMVLRAEQLGNREWANKTQSHVDLLEDRLASRCPNYTDRDERQEAARQFARLLKVAADVAVKFFTMGVY*
Ga0078430_160556Ga0078430_1605562F084258MRSETELKNQIQKAQRADQLLNDPLIQEFIISVRGDLLNKFESTGLDNEKERTAAWHQSQVLNNFLDKFTKAIKEGKNAQLTLIERANIKLQKVI*
Ga0078430_164929Ga0078430_1649291F062779MPLITDSEMDDFDAVILKAGFDVDDFRVIDLEKELHPLTGTVTVHRISTDHAITYRAGHGSTWVADFLVDFYSGEYGRP*
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Biomedical Sciences Research Center "Alexander Fleming"
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