| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005757 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114926 | Gp0118638 | Ga0078058 |
| Sample Name | Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS872 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 29132078 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Deep Sea Hydrothermal Vent Diffuse Flow → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mid-Cayman Rise | |||||||
| Coordinates | Lat. (o) | 18.375 | Long. (o) | -81.797 | Alt. (m) | N/A | Depth (m) | 2372 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013484 | Metagenome / Metatranscriptome | 271 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0078058_101141 | Not Available | 2432 | Open in IMG/M |
| Ga0078058_109320 | Not Available | 1609 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0078058_101141 | Ga0078058_1011412 | F013484 | MDVRFHFPDGTLSTEHQALVEALNRFLAVLPDDEDQEVVVRLVMELLELADVASQGEIARAAGYSERTLRFYKRRLHDEGLGGLFDHPIPGRPAVSTQPAVEGAVVQAIVEAIITQHTLPDDAALAEAVNHHLADKKDPSAGQVTTSMVETIRLGWGIKRLPVRQQLQDAQTSPAPQQEMVHLGRTRVGGAFILAVLLVEEGLLRFAHLLSMAPGYAVTSVQWLLTAIFSVICGVERAFHLDDVRDIGFALLTGRPRPLSHSTFQHLLHAIASWDAIRFYLATARQAVRKVGEGTRRISLDGHVLPRHTKLVELAKGRIASTGRVLKAEELISAFDLDAGSFLALRVRQGGKNPTHVLLALVKELCMHRRGLEGLLRLFFDRGSYKGFIFEALSKLDNVHFYTPAVRYPTNVEQWEALTEEDFEPDPFVFDKHADLLPEEQPRFRLADITMEINIWEGKRLTGTVEVRAIVVHDPQGQTPKERWPFVLLTDDRDTPARELANEWGDHWGHEFAHRVGKHDLCLDILPPGYTLTTTRDEQGRLQRQVEYDTASFFLSAWLRCLVFSLMTLFGQALGGECANMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQEELRPLLEELNAKRVALPWLNGLVIQFSIAQDEPLHPLTEPEKRQRLFGDG* |
| Ga0078058_109320 | Ga0078058_1093201 | F013484 | IHLEFSGRTLSTEHQAIVDALNEFLAWLPDGEDPNAALRLAMMILEAANVAPQAVLAQAVGFGQDRSVRVYKQRLREEGLSGLFDHPIPGRPALTTKTEVEKALLRVILSAVIEEHALPDDVTLAEGVNRILREAQEPEAGHVTASMIEAIRLRWGIQRPTLVRQLQATQLAATAERAQMRLGQTRVGGAFILAVLLVETGWLKLAYLLPMAANYAVTAVQWLLTAIFAVIFGVQRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAIPKEKAQAFYAASAQLEVQALGEGPRRISLDGHNLPRYTRLVDLPKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYRGTKKLSQGLVEMVREILKHRGDIPGRLRVFFDKGGYSGQIFRDLAEESQVRFYTPAVRYPANVELWEQLKDSDFDPEPFAFDKHADLPPDRRPVYRLADTEMTLNVRADRKVVDTVTLRAIVLHDPQGEKPAERWPVVFLTDDRDIDARALLNEFGDHWGQEFAHRIGKHDLCLDILPPGYVLKTRQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |