NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005222

3300005222: Norris Geyser Basin Perpetual Spouter 2 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods



Overview

Basic Information
IMG/M Taxon OID3300005222 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114622 | Gp0115254 | Ga0073351
Sample NameNorris Geyser Basin Perpetual Spouter 2 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
Sequencing StatusPermanent Draft
Sequencing CenterStanford University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size53507379
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6
Not Available2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Tepid (25-34C) → Unclassified → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.726683Long. (o)-110.70915Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031688Metagenome / Metatranscriptome182Y
F031713Metagenome182Y
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F040370Metagenome162Y
F042607Metagenome158Y
F065185Metagenome128Y
F071164Metagenome122Y
F074102Metagenome120Y
F085609Metagenome111Y
F091043Metagenome108Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0073351_106810All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1401Open in IMG/M
Ga0073351_107304All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1420Open in IMG/M
Ga0073351_109414Not Available642Open in IMG/M
Ga0073351_118521All Organisms → Viruses → Predicted Viral1462Open in IMG/M
Ga0073351_123596Not Available767Open in IMG/M
Ga0073351_126087All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1073Open in IMG/M
Ga0073351_127208All Organisms → cellular organisms → Bacteria2005Open in IMG/M
Ga0073351_130738All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4025Open in IMG/M
Ga0073351_133522All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2623Open in IMG/M
Ga0073351_141496All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1788Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0073351_106810Ga0073351_1068102F036462MSQQVRLGDVLGSNLEEDFKNFDLTEIQEVLEQLRDADAIDLAHAELLQQQALRGADILANYLAKMVKTVAYLESQVNSTKNKVSLDYVAPDGSRTTVDMKKWAGESSPEVEKVQIKLAEAKGGKIALERKYEILVKAHHHFKDIAGGLRKTILGYSSGTGNAPGEGYE*
Ga0073351_106810Ga0073351_1068103F042607MGIQIIDNKKVEMTSDEWDMYQKIVKSYTDITGKGEDLFIDLFETNDDGIIVFLKPPSKRRTSLEVFLFLMSLMQHQHLRLMHQQVDDAVKELKKKNKPDK*
Ga0073351_107304Ga0073351_1073042F038776LETVAFDIVRFKDGDKGAELWQVQSADDGDYIVALYDEDEVEKTASANPWGVFVSKNGNEVQISYKGDPLVRLASSKLGIPSSELHKAEQYLPEKLATNKKLVKALLSELSEAARHEVSKRYPELV*
Ga0073351_109414Ga0073351_1094141F091043MDVFHKNISSFFEELLSDLNCQNDTKAYIVSIYGKYKTAEFDLSKDSVTLRFAQARNNQDFLIYQNLGDWIFFANTLAPQHLHAASKDYYDTVARLSYYSCYKLINRQWKLFEELADDFTRLEAQVRKRLPQLKTQTSEGIYIAPFDL*
Ga0073351_118521Ga0073351_1185211F074102FSFKDITHQQMVDYLNDNHPISLKHNEDLVNRVYARYPILDKSEVGIIIKAVFASFRDLLVLGKVLNFNSLFFDTKLHFFDHRRDGRILPSLKVRISTPPKLRKHDKK*
Ga0073351_123596Ga0073351_1235962F031688MKTYIVYVDGEEKGTIKAGSHNAAEKKAQAKYPGRQVSVAYTEV*
Ga0073351_126087Ga0073351_1260872F065185MKITFDDKSYIECSKSANPGKVIITISAKDHTDPLKKITNAVEITVEEFKKLISDV*
Ga0073351_127208Ga0073351_1272082F085609MQDKVVAEAVRIEYEEKTGKLFIVFEVKDEKYKQDIRTNWTKDIEYKLVDKFLVKGDT*
Ga0073351_130738Ga0073351_1307384F031713MSNKNVTIDLKARKDIDGQTFYVGKIKAPILIDCSMGAVFLVFVSDKGDEQLQIALMDNKELED*
Ga0073351_133522Ga0073351_1335223F071164MRISELLNAMASWLESPNNEAMLLAETDEKCMQVVAESCVLAAALLKKAADEVDVLEPPTESKITPETIEETAALASALDQSGDPQLKRMASVLDELLLTVAAPPNAYAERKDLIDNRADEIRKKYEDPRKDLHKYNQIGKSEEAIEKSNFTKTYNILEAPLSSRYCPDHPGAQIARVGEHVWQCELDKKTYNFETGFELNNGSKVPGGDVSQQTQGLDTPFHAIFDTREGRLGYNK*
Ga0073351_141496Ga0073351_1414962F040370MSSNNFFRSDLFGVYNVIQASMIVYPKEIIIATLRDFFSHDSYYHFSKDQWGFPNTTDHTDLPPGADLPFGPGAQPQLNPNPVLPTRLFIGENYRYDGIFYPAVLVKNGGSKYVPISINRDQGIVRYDRMLFVDGYGNETVVTKPVALVTSGAWEGSVVIDVMTRSLRARDDLVELIAMCFTEIHFDTLHDIGIIVKPISIGAPSESDDRNDKLFRQTLTLDIRTEWRREIPIAHTIDAIFFTASFSDLVRGSPPAANLTVNTSVNTADMLLKM*
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