NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005096

3300005096: Hydrothermal chimney microbial communities from the East Pacific Rise - M vent 7



Overview

Basic Information
IMG/M Taxon OID3300005096 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114640 | Gp0114744 | Ga0072503
Sample NameHydrothermal chimney microbial communities from the East Pacific Rise - M vent 7
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size592184781
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrothermal Chimney In Epr
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Chimney In Epr

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent chimney → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationEast Pacific Rise
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041287Metagenome / Metatranscriptome160Y
F048675Metagenome148Y
F063710Metagenome129Y
F074900Metagenome119Y
F091343Metagenome / Metatranscriptome107Y
F097229Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0072503_129132All Organisms → cellular organisms → Bacteria → Proteobacteria27624Open in IMG/M
Ga0072503_133386Not Available3715Open in IMG/M
Ga0072503_142125All Organisms → cellular organisms → Bacteria3158Open in IMG/M
Ga0072503_156927All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4553Open in IMG/M
Ga0072503_157593All Organisms → cellular organisms → Bacteria2538Open in IMG/M
Ga0072503_161052All Organisms → cellular organisms → Bacteria5478Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0072503_129132Ga0072503_12913216F074900MTAKIINLADPDEREHAFATVEEAERALAAMVEKFKTQGYRVEEQRPPNEKYPQFAVYDFGDAWIGTYTIEL*
Ga0072503_133386Ga0072503_1333862F041287METCFKCGGNADFICPDCGTKMCWSYSERRYRGADRGFKSRFMCPKCWKTKRKVLNENMVNAKTYKPKKTYIFSK*
Ga0072503_142125Ga0072503_1421252F091343MWRETRVSRNRKSVMADIVENYQHAALWLIGPDMPGLLRMGATYVLDRGGNIDKDIADKFGEKAVVFLSITAEPDGIRRMDRDKDQLRRDSGCGVVFQPMNSPTVPDEFQQELHGFDIVTDDRPGMIADLTELLEKFSILIVGHAGERYIAPLPEPHARGGQKCVVLLPKEFDLPGFTRELDALVWKYNGMIKTPLRKVPGLLWWW*
Ga0072503_156927Ga0072503_1569276F063710MNKSRQRSLRIRVEHEPNRFSDDCLERIYEELHPTKSRKVTPDKSNKQGEVELQKGKRGPQ*
Ga0072503_157593Ga0072503_1575932F048675MDKHLEKDEVLFCEHYAAAQSLKNAWTRLASTYGCMMVVLSGKTLIIKPHWFAGWLIYLLGLDLCHEIPVTNIRKVTETGVWSKYGKVELHFRSAEGQDKRVLLYLTKSREFVDRLADAIRKT*
Ga0072503_161052Ga0072503_1610522F097229MFRVQKKMCSTCIYRPDSTLDLDSLEDAVRDPHVGFKAHRICHHSADVCCRGFWEAHKGEFPAGQMAQRLGVVDFVDVDNLIEVTK*
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