| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300004962 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0111052 | Ga0066619 |
| Sample Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_100m_RNA (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 47425718 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 6 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal inlet → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | N/A | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006550 | Metagenome / Metatranscriptome | 370 | N |
| F015413 | Metagenome / Metatranscriptome | 255 | Y |
| F016399 | Metagenome / Metatranscriptome | 247 | Y |
| F096688 | Metagenome / Metatranscriptome | 104 | N |
| F100304 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0066619_1138289 | Not Available | 641 | Open in IMG/M |
| Ga0066619_1148061 | All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 520 | Open in IMG/M |
| Ga0066619_1156664 | Not Available | 914 | Open in IMG/M |
| Ga0066619_1157932 | Not Available | 1150 | Open in IMG/M |
| Ga0066619_1158828 | Not Available | 518 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0066619_1124512 | Ga0066619_11245121 | F100304 | HIMKSVIAFGLVAAASGISLTPDNWDEAVAGKTVLVKFQAPW* |
| Ga0066619_1138289 | Ga0066619_11382892 | F015413 | MDSHDLEKQVESLLATPQFEQPQFEQLIPKGILGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVAQELNPLVKGVMW* |
| Ga0066619_1148061 | Ga0066619_11480612 | F016399 | GIGSSLKTGVIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLSLGGIFGGGASAPVQEMSV* |
| Ga0066619_1156664 | Ga0066619_11566641 | F006550 | DYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDE |
| Ga0066619_1157932 | Ga0066619_11579321 | F006550 | MTKIFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVISLADASLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIANFQGPQRIGSAHDEETGDDKYFIIDYHLAA |
| Ga0066619_1158828 | Ga0066619_11588281 | F096688 | KGLAVVGYASIMLLVLTGGRSANEAVFNAGHQACDAQYNMDAMQAFEMDPAEPFVQCHVAVNEAYPAAWNNWRRQNARTRGIAAASNSLGGKRSC* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |