NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004334

3300004334: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4B



Overview

Basic Information
IMG/M Taxon OID3300004334 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110188 | Gp0091630 | Ga0066241
Sample NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4B
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35705239
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)mangrove biome → intertidal zone → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000203Metagenome / Metatranscriptome1619Y
F007847Metagenome / Metatranscriptome343Y
F016975Metagenome / Metatranscriptome243Y
F023129Metagenome / Metatranscriptome211Y
F082867Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066241_1001835Not Available869Open in IMG/M
Ga0066241_1002562Not Available776Open in IMG/M
Ga0066241_1002684Not Available765Open in IMG/M
Ga0066241_1003290Not Available712Open in IMG/M
Ga0066241_1005228Not Available613Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066241_1001835Ga0066241_10018351F082867VQYRVVKPLTFTSNSLLLAVNPTLTDLSNTLASIYRQYRVTELSFTFQASDVAGAYALAMQYVPQVGGSPSAPPTTLSEFEGPAVGYCETGRGREYTFTVPSHVLNAMGLNYYSTRTNVSPSQDPDVITQGLMVFLTSTPTTPIIAYMHVKFEFQTLEDPSFLANLVNREENEAKDSIIVPRVTKSPGGELWN*
Ga0066241_1002562Ga0066241_10025622F007847VKRAERPHSKSSRRKALDGPATRPKTPLAVENSVGKLAAAERQMPAW
Ga0066241_1002684Ga0066241_10026841F023129MSLKDTAGLRTKGNLRGKRSDPSHGANAPPSAVADPALSGQDAHRQSQTCLDLVRKPVAQPSAQAG*
Ga0066241_1003290Ga0066241_10032901F023129MVKTLPLACESKGNLRVKRRDPWHRANAPPEAVADLELSGEDADRQSQTCLNLVRAPVAQPPVQAS*
Ga0066241_1005228Ga0066241_10052281F016975MDVSSPGSQAGGATTSSVEPKASLNFSDRKALDGPAMRPETPFAVENGVGKLAAHQGA*
Ga0066241_1007788Ga0066241_10077881F000203HALFPVLTLGAVQAASFPTPFSTASGVSGLIAGPSSGSRQLDFE*
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Institute for Fundamental Biomedical Research
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