NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300004260

3300004260: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time E -22min-Aerobic_ RNA (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300004260 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0055735 | Gp0103148 | Ga0058867
Sample NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time E -22min-Aerobic_ RNA (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size311068128
Sequencing Scaffolds22
Novel Protein Genes22
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea10
Not Available6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMadison, Wisconsin, USA
CoordinatesLat. (o)43.076217Long. (o)-89.411742Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001598Metagenome / Metatranscriptome665Y
F002706Metagenome / Metatranscriptome535Y
F007793Metagenome / Metatranscriptome344Y
F010229Metagenome / Metatranscriptome306Y
F011950Metagenome / Metatranscriptome285Y
F019603Metagenome / Metatranscriptome228Y
F020127Metagenome / Metatranscriptome225Y
F020483Metagenome / Metatranscriptome223Y
F025660Metagenome / Metatranscriptome200Y
F033437Metagenome / Metatranscriptome177Y
F051952Metatranscriptome143N
F054605Metagenome / Metatranscriptome139Y
F063845Metagenome / Metatranscriptome129Y
F069054Metagenome / Metatranscriptome124Y
F074446Metagenome / Metatranscriptome119Y
F075741Metagenome / Metatranscriptome118Y
F077495Metagenome / Metatranscriptome117Y
F078135Metagenome / Metatranscriptome116Y
F083600Metagenome / Metatranscriptome112N
F084936Metagenome / Metatranscriptome111N
F089747Metagenome / Metatranscriptome108Y
F102369Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0058867_1006524All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida777Open in IMG/M
Ga0058867_1020541All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea635Open in IMG/M
Ga0058867_1024143Not Available633Open in IMG/M
Ga0058867_1025632All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea668Open in IMG/M
Ga0058867_1030458All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria615Open in IMG/M
Ga0058867_1047467All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia836Open in IMG/M
Ga0058867_1051902Not Available568Open in IMG/M
Ga0058867_1120717All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea647Open in IMG/M
Ga0058867_1146418All Organisms → cellular organisms → Eukaryota504Open in IMG/M
Ga0058867_1158652All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea708Open in IMG/M
Ga0058867_1199804Not Available585Open in IMG/M
Ga0058867_1204050Not Available520Open in IMG/M
Ga0058867_1208225Not Available571Open in IMG/M
Ga0058867_1221485All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea557Open in IMG/M
Ga0058867_1225915Not Available602Open in IMG/M
Ga0058867_1275133All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea941Open in IMG/M
Ga0058867_1349757All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea592Open in IMG/M
Ga0058867_1377917All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea530Open in IMG/M
Ga0058867_1382995All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea743Open in IMG/M
Ga0058867_1470523All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1230Open in IMG/M
Ga0058867_1485859All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile659Open in IMG/M
Ga0058867_1505299All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri623Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0058867_1006524Ga0058867_10065241F002706FIILSLSIMALYNIYVLANKSTCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVAQPFPFFKEVESNKQCCGCGKLGPTSDIPQVSVANPADFAGLPQSGMADNGSHLLKIDKSADVKLFDKPVVMGTGQYRNEHIPYTSEFNQRDRRELNLNLLHKD
Ga0058867_1020541Ga0058867_10205411F074446MVEDTKLEAKTPLLSANLSYPTRPYVAQMPFFMRLIGHYTDSGRPMPQSGSPEAETALQDQRLVYNDDTQPIEVVNPFVRWHRRWYRSKAVDPSPTVGAYYTPFNMALEPWAMGLGDMGCAKIFKQYRMCTHMVPSNRRYLCEDEKDDFKECIFAQKRYLRQQYMYQHRVKKNLPFPEDPLIDGYNWHSFKYLN*
Ga0058867_1024143Ga0058867_10241431F077495TKRAKHTYTNSLNKNMYSNRNIILLIGLTLAILLLSCTVKADTVDDEQHLVANTDEDNSISNEVDDELEFYRRASLRPVALYQRASLRPFAGKRASLRPFAGKRASLRPFAGKRASLRPVNYMGKRKRRSLMYVDSE*
Ga0058867_1025632Ga0058867_10256321F010229VKSVVFLSVKIMLPILRSRVSLTRVITQTLAAQRQRDAFRVPTQNSSAVAPLTDEQRAFNLKIWPGVPETVRPTPIDYCPIDPVEYDKQTNRFSSQVSMWKWLSLLVAIPAVALLTYINLILPQNHTRPEFKDWDHLRPRMKWPIKDGQHSPFHSKWFNAIHFDAKGYETTDAEFEKQFHHGHGSKH*
Ga0058867_1030458Ga0058867_10304581F078135MSSSVVRRYKIRKSPPQPLDRHLSEIGETDGSTYINAGIDSTCCKKRGRTIHKLTNGVMVSPSLSKVANKRMLAKSCDNLASALINDNSNDDQLDSVNCQDSQSGK*
Ga0058867_1047467Ga0058867_10474672F033437VGVGARHALFPGGTRLDALAFAGGVLPDATLRGMRMYRSHGGTVLIVADRDLSSEASAPGSDAPCREHLAGRGADTPATNVIRVGTLTTGTAPACDRPLAPRYGSDLLPLRLHFAFAVG*
Ga0058867_1051902Ga0058867_10519021F051952PEFPRQTIAPDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKHKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTS
Ga0058867_1120717Ga0058867_11207171F063845FVTLIFLALVGVSLTAPSYPLWPTGFRTEATVTAFDEDNVPHIHRSTFYYTYTNKTSTGRLHGEERHDHYDYCYGWAVGQPSCTILITENVYVIAKNLCCIAMPGNAGVPINWLKGATWLGVEQIHGKNVDHWYSFEHEYWSEVNEPRNGIRYSGPNFKTPRQFTDYDEWKIEPQDPELFLLPKDTDCSKACPQ*
Ga0058867_1146418Ga0058867_11464181F007793STNRPSMSEAQDLKDAFEAFAEGKPHLSKVECMMAIHALCKNPIQSDLNGAMSSMGDDISFAQYQQLFAKAWPRPDQQQSDLSKLMQMLDHDDNGKVQEGEFRQLLLSVGDVLSHQEVDLLFEEVPVDDQGFFRYDALVDKLVGGHMPGMH*
Ga0058867_1158652Ga0058867_11586521F069054RQSFLCNENKTYPMLLSKYSSTRQIYSKLFERAILVRSAHHQTTSDSNQKQYRTPLSLDPDFRAPPDDELPRAKTPEMKGIHFNIRDFYQHYFPNDPVEARLPTPWHMDIYYRKQYYIIGALLGVFFGIYVSYRRILVDRARRRDWEKHHGDPLSYYDVIGPIDPNATRKVWDDNPNLPQPQGWVSKVQTEHQSH*
Ga0058867_1199804Ga0058867_11998041F019603MKVILVLLITIAIAYAAAPAQPVFPSAFNAEVSRYRGGQRPVKGEWYYSVALNAERFDYDMIDHNDQPVHEAFYALHNESTGYLMTTAGGSFSCRKFNIGNKVFVPSLTGFTYTGMDVVQLNIPTPAYKWTNSNQSDELRVYYNQVTAQNTPVRVDRAIDGKVDQITFWAVNVGAQDITLFQIPNPIKNNLCSN
Ga0058867_1204050Ga0058867_12040501F089747KKMKVLFLILISIALALSLQVQFPIVLLYNGACDPWARGAACHGTATSEHIATHINANAGAKTSVTNVIGARSRNFGNATYTGSNSYTVYGNVTYGVFDEHAIYFSSLNGFCIPNCTDSHAIFIDTGVINGGLGAYKNATGTYSAIQQPFHGKPGVEFWFNALITLDK*
Ga0058867_1208225Ga0058867_12082251F084936PHKMLVLLFLVALAIAAPVKPNFSEDFTAEAIYTIRRGRDHPRSFHGQWFHDGTAKRERFDVEADMVGRVDLYKFWNNTKGGLEYEDIKSHQTCHHRPFVQPYHGIFDFVAGSHYAATCDGGKGARWTATIPGAFELDLCASVDGTTPYWVERKHLVEHRLEVTVRFHEFKAGRPANSLFVIPNECKKN
Ga0058867_1221485Ga0058867_12214851F025660ILFVSTANGFLFSKGPKCAVAVFKGGKEFSGEKIMANKSFVPYLKTIGAVAKGCKVKVHVVDSYKQLKSPTEFVLSTQLPLALGRGIQFDLQDSTGGTLCNKLCMLSHSHKTLPAAKCFLDGVQNKGIKFTAPNTLDDGSVAKLSVTEANNLKVEVQTLCAPKQKAVKAPKVKTI*
Ga0058867_1225915Ga0058867_12259151F001598ANMASAGTAVGTKENGIELTGCRDKFLAIKWDPVPDAASYAVFKEVRDIWDMQTVTEACKETLGALRPGNKYLIKILALDASGSRLKTLGTATFVTDGPEDKRQPKIKVEGLEANWEEVLKGYPEPAAKADPYSGATPCPYTWTCTLMNHAGHCQTYGHPRPLVCPNGEGCTLASKEHQAQFSHKA*
Ga0058867_1275133Ga0058867_12751331F054605MMMKSFSTLFVIVVASFILLTKTNGISGQAASSDDSVRSNWLSDAHRNRVELFKKWLGNKPIPHSIHDKSQQSPYNILHPEQKFKGCTDPSEPFQCPESEKCIALQFICDGHPGDCPRNTDENEETCIAAKRPAKDNIEKFLQAEYTLHGPKLFTFLFGHKISKSIEQNNLFWFDTLASAFSVAKTIRNFAEKTHMSPEDLAHFQNVVQTIHDGQLEEIPMYAQEAVNQGLASLIEKLYESGFMDQ*
Ga0058867_1349757Ga0058867_13497571F020483REYLLLFLILFRCVYLFRQLNNNNSNMQYHSIIAYLFVMVFAMTIVLTHANKEREQFADLLQKRKHLNGYWVGKRYILTSDEEPSYDSEDDFSAAKRASYLVGKRGTYLVGKRASYLVGRKRRDLMASQ*
Ga0058867_1377917Ga0058867_13779171F083600LTKRFKIPIFQIKRITMSSQRALAAIQTMKIIYGSQGRQNVLPYHYLGQVYRTPWRFWYSNSQVFRWFSRIMLSAFALTLYLPLKGVDLSYTPYTIVHHQLDHKFGDWIEEMRYPVDQKRVEEYKKAHGLK*
Ga0058867_1382995Ga0058867_13829952F020127MSYEPLNRRVSLLAAILAFLGVVLGGIALGTNYWTITSITVPGFNETNLIPTDYEWNGLFKICRTGFTCTWLFRPVTFIIGVVGLAFLLLGGIFAAFDLPKATDRRFVTPLLLFIASVLLTASLVDYASLLSLNSHSSRVMIASVVFSYAALPLAAFVAGRYSALERNALVNNGIHLTTQKYSATNGNGL*
Ga0058867_1470523Ga0058867_14705231F011950MGLFGNKREKAEKVDKYEYHSSSKGGRSRYGPPAIPGAAPPSPYVAGGVPFYDGFGQVAQQPGKLGKFPGPNKSLYGGDPMQQAMLMPPSSPAAMQAQAAAMLQMQQYMQGDGAGAQFGGVLPPIQMPMPAAQQAGLVPNQVPPYYGFGGQQVGTPYFDANSIAFQQQGAFAPYQQPNFYDPSAAAMYPGPYGYMPAAY*
Ga0058867_1485859Ga0058867_14858591F102369MKLVHDNFLFLFAFIIIGSQLLSICTANTDATSLDLNKRYRYDKKDISTLSNSMESNDLDTDDGHVLALNKRYRFDKRYRYDKRSNNNGINKRYRFDKRYRFD*TNTLNSITIEFKDSIE
Ga0058867_1505299Ga0058867_15052991F075741EADLAEIIRLGQDVRQSSPAVGRQFNDASCQMITQCCPHLQSTFASLALSGKGEAVMEQCFGRKDSSTFLSKLTSCPPFTTITTLSRNPQLSKYASVMSKKTAQMNEDMQVVLSTCSPDEIFAMACEWNRTDLQGSCQRKVLQSVARRGDQVYKNKVEQTKSAYTQIVNELRNGL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.