Basic Information | |
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IMG/M Taxon OID | 3300004208 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111384 | Gp0110936 | Ga0066640 |
Sample Name | Groundwater microbial communities from aquifer - Crystal Geyser CG11_big_fil_rev_8/21/14_0.20 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | Y |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 1292564548 |
Sequencing Scaffolds | 30 |
Novel Protein Genes | 34 |
Associated Families | 31 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 2 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
All Organisms → Viruses → environmental samples → uncultured archaeal virus | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
Not Available | 15 |
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea | 1 |
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus gilardii | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas mediterranea | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater biome → aquifer → groundwater |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
Location Information | ||||||||
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Location | USA: Utah: Grand County | |||||||
Coordinates | Lat. (o) | 38.9383 | Long. (o) | -110.1342 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001003 | Metagenome / Metatranscriptome | 808 | Y |
F004880 | Metagenome / Metatranscriptome | 420 | Y |
F007959 | Metagenome / Metatranscriptome | 341 | Y |
F009732 | Metagenome | 313 | Y |
F016112 | Metagenome / Metatranscriptome | 249 | N |
F017787 | Metagenome | 238 | Y |
F019951 | Metagenome / Metatranscriptome | 226 | N |
F025862 | Metagenome | 200 | Y |
F026802 | Metagenome / Metatranscriptome | 196 | N |
F038776 | Metagenome / Metatranscriptome | 165 | Y |
F039194 | Metagenome | 164 | Y |
F043249 | Metagenome / Metatranscriptome | 156 | Y |
F043771 | Metagenome | 155 | Y |
F048100 | Metagenome | 148 | Y |
F049412 | Metagenome / Metatranscriptome | 146 | Y |
F061536 | Metagenome | 131 | Y |
F065251 | Metagenome / Metatranscriptome | 128 | Y |
F068439 | Metagenome / Metatranscriptome | 124 | N |
F069433 | Metagenome / Metatranscriptome | 124 | N |
F069437 | Metagenome / Metatranscriptome | 124 | Y |
F071971 | Metagenome | 121 | N |
F076867 | Metagenome | 117 | N |
F080856 | Metagenome | 114 | Y |
F080881 | Metagenome | 114 | N |
F083231 | Metagenome / Metatranscriptome | 113 | Y |
F091327 | Metagenome | 107 | N |
F091328 | Metagenome | 107 | N |
F091390 | Metagenome | 107 | Y |
F094905 | Metagenome | 105 | N |
F096615 | Metagenome / Metatranscriptome | 104 | N |
F102531 | Metagenome | 101 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0066640_10033177 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis | 3003 | Open in IMG/M |
Ga0066640_10057924 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 2218 | Open in IMG/M |
Ga0066640_10109039 | All Organisms → cellular organisms → Bacteria | 1551 | Open in IMG/M |
Ga0066640_10128748 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 1408 | Open in IMG/M |
Ga0066640_10129533 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1403 | Open in IMG/M |
Ga0066640_10144021 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 1319 | Open in IMG/M |
Ga0066640_10178987 | All Organisms → Viruses → environmental samples → uncultured archaeal virus | 1159 | Open in IMG/M |
Ga0066640_10239614 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 968 | Open in IMG/M |
Ga0066640_10246149 | Not Available | 952 | Open in IMG/M |
Ga0066640_10252714 | Not Available | 936 | Open in IMG/M |
Ga0066640_10279811 | Not Available | 878 | Open in IMG/M |
Ga0066640_10318357 | Not Available | 807 | Open in IMG/M |
Ga0066640_10330004 | Not Available | 788 | Open in IMG/M |
Ga0066640_10372638 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 727 | Open in IMG/M |
Ga0066640_10410481 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea | 682 | Open in IMG/M |
Ga0066640_10418129 | Not Available | 674 | Open in IMG/M |
Ga0066640_10423074 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense | 668 | Open in IMG/M |
Ga0066640_10439196 | Not Available | 652 | Open in IMG/M |
Ga0066640_10461017 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus gilardii | 631 | Open in IMG/M |
Ga0066640_10461081 | Not Available | 631 | Open in IMG/M |
Ga0066640_10478842 | Not Available | 615 | Open in IMG/M |
Ga0066640_10494104 | Not Available | 602 | Open in IMG/M |
Ga0066640_10509901 | Not Available | 589 | Open in IMG/M |
Ga0066640_10545307 | Not Available | 562 | Open in IMG/M |
Ga0066640_10563842 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 549 | Open in IMG/M |
Ga0066640_10575821 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas mediterranea | 541 | Open in IMG/M |
Ga0066640_10596533 | Not Available | 528 | Open in IMG/M |
Ga0066640_10632846 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense | 506 | Open in IMG/M |
Ga0066640_10634352 | Not Available | 505 | Open in IMG/M |
Ga0066640_10643367 | Not Available | 500 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0066640_10033177 | Ga0066640_100331776 | F071971 | MIREVFYNAESTISAMNNTAKYGLENLNNVHEAFSIGFAITHADMAIMTAPETIAVHRYTGPTMGSPFSVVKKNGAIENTTITKVEIAMVLADVFSDWTAVSIGTFTLL* |
Ga0066640_10057924 | Ga0066640_100579241 | F069433 | MAHKMPPKQCSSNTPAWTDPVLTDLSTKIRKAHIDELRSFLNVEFVRRGLSQASFTDPAITALVIEIRKVHVDQLRTELAACKSGRGESGYCPQDGSGCMDFTDPTITALTTEVRGVHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECSHSINHYWNCASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGLSWGSCEYSGGHDHTAWNCKCNPYSW* |
Ga0066640_10109039 | Ga0066640_101090392 | F076867 | MDEKKTNLAELARKKRYISLVEKMGRGAALSSKEIKELDGFEKAEAHKTDIVVNDGTVDLQTISLYLDKSTRMVRRYISQGMPIIRDDSGEIFRFKVGEVFKWYYSGKGADEDGGKEYWDNEYRKNRAKLSKIELKKIEGELIAFADHVSIVKNQIRGIKSGFLRLPKHIAPKLYQQDPKVICDLLDEEIRFMINQFAGTHNANKAGKGNP* |
Ga0066640_10128748 | Ga0066640_101287482 | F065251 | MMYLIFFKKGRKKYYYIAKAVREGDRVIQKSILYIGTADTLYKKLIQLKKKSK* |
Ga0066640_10129533 | Ga0066640_101295332 | F025862 | MPRIARPRVQEEGSRPAAEKRFVSRKNAAAEPLDDVERQFLEPVARYLTILREWSLERLSDGTGTVPPEQP* |
Ga0066640_10144021 | Ga0066640_101440211 | F076867 | SLSSKELKELEEFEKAEQRPLDGVIDGTVALPILCVYLEKSPRMIRRYVQQGMPVIRDAAGEIARFKVGEVFKWFYGKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHVAPKLYQQDPKVICEMLDQEIRYIIEQFAGKQNVNKAGKRNS* |
Ga0066640_10178987 | Ga0066640_101789872 | F019951 | MTILFKAFRIDVSGNNVHCEAYSKLHVQKGQTITLHAIQIAPQTSTGDEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFEAGAVEGQTFVMKAWGLNARTIHGVYMYEITS* |
Ga0066640_10178987 | Ga0066640_101789873 | F026802 | MYYYVPFSRDLTQGNTEEIATADPGHLVGVFLRFKSGVEGFHPLWGQISISNIGTTKEYLLKNGIYAIFQRGTDVYVQNYWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYSK* |
Ga0066640_10239614 | Ga0066640_102396142 | F038776 | MGDAMSKFAINYSNLENTIYKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSADDGDYIVSIYEPDPLEKIANNWSVSINKMSGDMQISYKGDPLLRMAYNRLGIPRSELNKAEQYLPQKLADNKKLVKSLLNELNESAKKEVLSKYPELV* |
Ga0066640_10240595 | Ga0066640_102405951 | F094905 | MNALYGYIAVFVVIVFLGAGWAVEHDKRITYQAKVEQAGADALAQTEKINAKHREEMQNAEHNTIIATNSIADWYRAHPAVRVRYAN |
Ga0066640_10246149 | Ga0066640_102461492 | F083231 | KKHLLRIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI* |
Ga0066640_10252714 | Ga0066640_102527141 | F091390 | MATKDTKSTDTTTIRIEKSIKEELENLDFVRKDTYNQILSKLIGFYNKHKKRGQK* |
Ga0066640_10279811 | Ga0066640_102798111 | F039194 | MPDLYIFKTQVGMFDPVALQNHNVCIHYVQKSYYRKVDFLEGIPAFQCIDITAGAGLAALMVTGRVNVTNLEMADNEFGLWRWYPIDDAQVRLYHPTGIAKYQLRNLQVPVDMNIVLRDPNLVSTEIAVWQNNRPGVEAINGHAFALGAVRLIAIGYRFHSVDLESGKNADPMLVKAIKEGKAPCTDIWCSGRGTGD* |
Ga0066640_10318357 | Ga0066640_103183572 | F061536 | MGSINKIKAEELVALGNRVVAISEDVRNRQADRLSRVTRRGKEKENSPITEAEEWPLLLAELRSFFWAIEKNLSSMNE |
Ga0066640_10330004 | Ga0066640_103300042 | F004880 | MDYWEEINNGNKYLCDKCDIVALGAFEYDNYIKFQYHYCELCWNYIHLKKGSCSCGNTMTNRNEYPTMKVLCSCGEPVELKIDC* |
Ga0066640_10372638 | Ga0066640_103726381 | F009732 | SEVEFEEMKDKSFELILVVEMLCEVCEKPLSTRQKFLRKVQISSRDDYQNLLNSVKVHDRAEIDVEGGKIYFYDHDFPGDVHSGCVEKL* |
Ga0066640_10410481 | Ga0066640_104104812 | F080856 | MARQESVVVFMEIDLLGKSVNAPKFLGILEKEFDWFVSYTLMLAEKHFEDPESKRIFIAVVLVGDYVWDIHTVRFEEVTYEKDRTKRRKIVAPTQAVLQNVMKELRVAYEKAKELPPQIRRRLEETKTGQ* |
Ga0066640_10418129 | Ga0066640_104181291 | F016112 | EKVRNICGITKEQINDIVIHDMLEQTDRKVRDRVYTFRRLTMHMDKIATNKIRFDVNKIGDGNMDTSIDDTDIFIYRMNEGVYELFPIEKLDILSNEITFQTDIGENYEMIAEYFEDNFHFSIDTLSDASSLFAAAMCMRSLPLVEEDNNAKEYERRAKEIITRSSASFI* |
Ga0066640_10423074 | Ga0066640_104230741 | F001003 | MILLIQMKKITMEKFKKFKIENKDFVLPQNLSAKEKDIFMYIFRLLRQKINKGIYPELCNNEIIYSKSDMKNLISKGIIIFMQYKKGWIITINPTFSTKNVQCSWCGAKFNEKIYFRQKRMRCPSCMSGMNGSTVAEKFEDKTEIKEEIYDIETVRTDIENVCIDTKIIPFQTSKADGLN |
Ga0066640_10439196 | Ga0066640_104391961 | F102531 | QTIPIQPQKTIAQINQEIDNLVARGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK* |
Ga0066640_10461017 | Ga0066640_104610172 | F096615 | MTGIYGNNPEDKARQCELDTYLKSAYRLNDDDERIKELARDKFNSLPSFYSPVNDKHRYTYMDDAMGSLKQEELIALARLLRDGEHLQAGKLLEASLMRILTAEAEEEIKDEQY |
Ga0066640_10461081 | Ga0066640_104610812 | F069437 | MPVKIKKVDGYKVTHGGKVSAKKTTKEKAEAQARLLRGIEHGNWRPTGAKARTRKKGK* |
Ga0066640_10478842 | Ga0066640_104788422 | F091328 | VAGGVFLYLKHQRTVLSNVAVEKSGDLPLELSVDFDPTVNSPKFMIESVDRQTKTFNLKSVFPPTFEGKSLTSRITCQEIKIVGPGDSVGEDVVYDVLMERMEGVSKEMMIFSGLCSDNTCAEINQSCRLYLAKVAP* |
Ga0066640_10494104 | Ga0066640_104941042 | F091327 | CGWKPKTIVCKNITISDDEEAFANEFSAKVSEQNDTYVDTVLIELAIAQILQVHRVYVYSKEQKIPRDASRMIGTVLSTLREMNATKNARKVDNIQVNVNSDIMTLIQQNLNLISNDDSKKRNNILTK* |
Ga0066640_10509901 | Ga0066640_105099011 | F043771 | MDEIPLKCECECGCGEDATTSDEGEALCEACAEYTVDPESGEVVCSRDPRAEEVTESCGAGGQTRSYWRLRPPESPAPSPNGEWACYWDTAGDGSRVVSRHETEAEAAQAVAAQDWPAPGDHTHYLCGFTVRRWDGEAWVVAAATL* |
Ga0066640_10545307 | Ga0066640_105453071 | F080881 | EIEMSKNSKSAVALSELAVMPQFAAPVVEITPEVLSMIVMDIDPALIEAAELKEARLDEIRAKKDEAKRLIALYHEIAKTLNPLCDEYDSVEEERKLLKGVLEDALLASRITLANHPKVLENKAQIVKAAPNLMAEFNEKFNAAVIKQTQIAQADNIARMKALDASFAELDKKTAQLSKQYDEYKAL |
Ga0066640_10563842 | Ga0066640_105638421 | F043249 | LIRVDGSGDLRQGNVGVFGAVQSRSQLFVRQGADVAVSNLTTGGFFPSDQTFVTLAVRVWTYFRFNVESQRTDAQNTTGPVASLAGVTADRIQRVHKLYHQAENQLFWQFIAGDKPQLTTFTAYTPAAGGLDGFFSDTRLPRANNGVPTSAALMRLARPILVPPRQGFQVVAIASPIGQAQGA |
Ga0066640_10575821 | Ga0066640_105758211 | F076867 | YIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAAGEIARFKVGDVFKWFYVKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHVAPKLYQQDPKVICEMLDQEIRYIIEQFAG |
Ga0066640_10596533 | Ga0066640_105965331 | F068439 | MKSEHESVDTKSTQDKKKICEACQKRETEENDSIIKNVEEIEIYDRKKTGKNYSYHIFFYTIENECFFEYYLYNDIKRFNKERTNFLSLLTDENKKKVYDFERKMHEKYPEYLYKMKNKKVTYPEYKNIKEYRISENYTVMFFTIGQHAIFQYFEDDGLI |
Ga0066640_10632846 | Ga0066640_106328461 | F007959 | KQEYKKDFDIPVLSTKEKDIFVYLFLLLRRKMSKGIFPELHNSEILFSKSDLKALVLKNIVIFQNHKKGWIISINPKYITKTTECSFCGAKFNEIVYFRRNSITCPGCGFRIHGLVTAKSITNIEKVEVIPKVTTSVVKVPTEHVITDIPGNLKITDIVLAPTAMERT |
Ga0066640_10634352 | Ga0066640_106343521 | F049412 | MKNNIISGEITSVFPELNCFEIDGYVFFNDVKASTVKKLKLGEKVSIEYKKKKIKSGNWSFTDFIFLKFKKIITNKQNNNGKQKKECR |
Ga0066640_10634352 | Ga0066640_106343522 | F017787 | EKIIREGIHSETKEKYALGVRARFQVNFQYFEISKHPKFDDECVYLSRKFFFLKNNITDDERKEIEKFENEILDKFYYGK* |
Ga0066640_10635271 | Ga0066640_106352711 | F048100 | SDDIDRMNLEFYNMVGNTYGPQTILEQHRTTIKIDTFRRDIGKRWAENMKKREEIYEIIDMLYELAKIETENLDAERSKQMSWAEIRQKIQEKMIKTLSR* |
Ga0066640_10643367 | Ga0066640_106433671 | F016112 | EKVRNICGITKEQINDIVIHDMLEQTDRNVRDRVYIFRRLTMLMNKIATNKIIFDCDKIGDGNRDTSIDTTDISIYRRNNGVYELFPIQKLDLLSNEITFQTDIGENYEMIVEYFEDNFHFSIDTLSDASSLLAAAMCMRSLPLTSQTNNDAKEYERRAKEIITRS |
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