NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004208

3300004208: Groundwater microbial communities from aquifer - Crystal Geyser CG11_big_fil_rev_8/21/14_0.20



Overview

Basic Information
IMG/M Taxon OID3300004208 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111384 | Gp0110936 | Ga0066640
Sample NameGroundwater microbial communities from aquifer - Crystal Geyser CG11_big_fil_rev_8/21/14_0.20
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size1292564548
Sequencing Scaffolds30
Novel Protein Genes34
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → Viruses → environmental samples → uncultured archaeal virus1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
Not Available15
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus gilardii1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas mediterranea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDevelopment Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeaquifergroundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001003Metagenome / Metatranscriptome808Y
F004880Metagenome / Metatranscriptome420Y
F007959Metagenome / Metatranscriptome341Y
F009732Metagenome313Y
F016112Metagenome / Metatranscriptome249N
F017787Metagenome238Y
F019951Metagenome / Metatranscriptome226N
F025862Metagenome200Y
F026802Metagenome / Metatranscriptome196N
F038776Metagenome / Metatranscriptome165Y
F039194Metagenome164Y
F043249Metagenome / Metatranscriptome156Y
F043771Metagenome155Y
F048100Metagenome148Y
F049412Metagenome / Metatranscriptome146Y
F061536Metagenome131Y
F065251Metagenome / Metatranscriptome128Y
F068439Metagenome / Metatranscriptome124N
F069433Metagenome / Metatranscriptome124N
F069437Metagenome / Metatranscriptome124Y
F071971Metagenome121N
F076867Metagenome117N
F080856Metagenome114Y
F080881Metagenome114N
F083231Metagenome / Metatranscriptome113Y
F091327Metagenome107N
F091328Metagenome107N
F091390Metagenome107Y
F094905Metagenome105N
F096615Metagenome / Metatranscriptome104N
F102531Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066640_10033177All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis3003Open in IMG/M
Ga0066640_10057924All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus2218Open in IMG/M
Ga0066640_10109039All Organisms → cellular organisms → Bacteria1551Open in IMG/M
Ga0066640_10128748All Organisms → cellular organisms → Archaea → Euryarchaeota1408Open in IMG/M
Ga0066640_10129533All Organisms → cellular organisms → Bacteria → Acidobacteria1403Open in IMG/M
Ga0066640_10144021All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus1319Open in IMG/M
Ga0066640_10178987All Organisms → Viruses → environmental samples → uncultured archaeal virus1159Open in IMG/M
Ga0066640_10239614All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage968Open in IMG/M
Ga0066640_10246149Not Available952Open in IMG/M
Ga0066640_10252714Not Available936Open in IMG/M
Ga0066640_10279811Not Available878Open in IMG/M
Ga0066640_10318357Not Available807Open in IMG/M
Ga0066640_10330004Not Available788Open in IMG/M
Ga0066640_10372638All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon727Open in IMG/M
Ga0066640_10410481All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea682Open in IMG/M
Ga0066640_10418129Not Available674Open in IMG/M
Ga0066640_10423074All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense668Open in IMG/M
Ga0066640_10439196Not Available652Open in IMG/M
Ga0066640_10461017All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus gilardii631Open in IMG/M
Ga0066640_10461081Not Available631Open in IMG/M
Ga0066640_10478842Not Available615Open in IMG/M
Ga0066640_10494104Not Available602Open in IMG/M
Ga0066640_10509901Not Available589Open in IMG/M
Ga0066640_10545307Not Available562Open in IMG/M
Ga0066640_10563842All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium549Open in IMG/M
Ga0066640_10575821All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas mediterranea541Open in IMG/M
Ga0066640_10596533Not Available528Open in IMG/M
Ga0066640_10632846All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense506Open in IMG/M
Ga0066640_10634352Not Available505Open in IMG/M
Ga0066640_10643367Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066640_10033177Ga0066640_100331776F071971MIREVFYNAESTISAMNNTAKYGLENLNNVHEAFSIGFAITHADMAIMTAPETIAVHRYTGPTMGSPFSVVKKNGAIENTTITKVEIAMVLADVFSDWTAVSIGTFTLL*
Ga0066640_10057924Ga0066640_100579241F069433MAHKMPPKQCSSNTPAWTDPVLTDLSTKIRKAHIDELRSFLNVEFVRRGLSQASFTDPAITALVIEIRKVHVDQLRTELAACKSGRGESGYCPQDGSGCMDFTDPTITALTTEVRGVHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECSHSINHYWNCASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGLSWGSCEYSGGHDHTAWNCKCNPYSW*
Ga0066640_10109039Ga0066640_101090392F076867MDEKKTNLAELARKKRYISLVEKMGRGAALSSKEIKELDGFEKAEAHKTDIVVNDGTVDLQTISLYLDKSTRMVRRYISQGMPIIRDDSGEIFRFKVGEVFKWYYSGKGADEDGGKEYWDNEYRKNRAKLSKIELKKIEGELIAFADHVSIVKNQIRGIKSGFLRLPKHIAPKLYQQDPKVICDLLDEEIRFMINQFAGTHNANKAGKGNP*
Ga0066640_10128748Ga0066640_101287482F065251MMYLIFFKKGRKKYYYIAKAVREGDRVIQKSILYIGTADTLYKKLIQLKKKSK*
Ga0066640_10129533Ga0066640_101295332F025862MPRIARPRVQEEGSRPAAEKRFVSRKNAAAEPLDDVERQFLEPVARYLTILREWSLERLSDGTGTVPPEQP*
Ga0066640_10144021Ga0066640_101440211F076867SLSSKELKELEEFEKAEQRPLDGVIDGTVALPILCVYLEKSPRMIRRYVQQGMPVIRDAAGEIARFKVGEVFKWFYGKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHVAPKLYQQDPKVICEMLDQEIRYIIEQFAGKQNVNKAGKRNS*
Ga0066640_10178987Ga0066640_101789872F019951MTILFKAFRIDVSGNNVHCEAYSKLHVQKGQTITLHAIQIAPQTSTGDEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFEAGAVEGQTFVMKAWGLNARTIHGVYMYEITS*
Ga0066640_10178987Ga0066640_101789873F026802MYYYVPFSRDLTQGNTEEIATADPGHLVGVFLRFKSGVEGFHPLWGQISISNIGTTKEYLLKNGIYAIFQRGTDVYVQNYWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYSK*
Ga0066640_10239614Ga0066640_102396142F038776MGDAMSKFAINYSNLENTIYKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSADDGDYIVSIYEPDPLEKIANNWSVSINKMSGDMQISYKGDPLLRMAYNRLGIPRSELNKAEQYLPQKLADNKKLVKSLLNELNESAKKEVLSKYPELV*
Ga0066640_10240595Ga0066640_102405951F094905MNALYGYIAVFVVIVFLGAGWAVEHDKRITYQAKVEQAGADALAQTEKINAKHREEMQNAEHNTIIATNSIADWYRAHPAVRVRYAN
Ga0066640_10246149Ga0066640_102461492F083231KKHLLRIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI*
Ga0066640_10252714Ga0066640_102527141F091390MATKDTKSTDTTTIRIEKSIKEELENLDFVRKDTYNQILSKLIGFYNKHKKRGQK*
Ga0066640_10279811Ga0066640_102798111F039194MPDLYIFKTQVGMFDPVALQNHNVCIHYVQKSYYRKVDFLEGIPAFQCIDITAGAGLAALMVTGRVNVTNLEMADNEFGLWRWYPIDDAQVRLYHPTGIAKYQLRNLQVPVDMNIVLRDPNLVSTEIAVWQNNRPGVEAINGHAFALGAVRLIAIGYRFHSVDLESGKNADPMLVKAIKEGKAPCTDIWCSGRGTGD*
Ga0066640_10318357Ga0066640_103183572F061536MGSINKIKAEELVALGNRVVAISEDVRNRQADRLSRVTRRGKEKENSPITEAEEWPLLLAELRSFFWAIEKNLSSMNE
Ga0066640_10330004Ga0066640_103300042F004880MDYWEEINNGNKYLCDKCDIVALGAFEYDNYIKFQYHYCELCWNYIHLKKGSCSCGNTMTNRNEYPTMKVLCSCGEPVELKIDC*
Ga0066640_10372638Ga0066640_103726381F009732SEVEFEEMKDKSFELILVVEMLCEVCEKPLSTRQKFLRKVQISSRDDYQNLLNSVKVHDRAEIDVEGGKIYFYDHDFPGDVHSGCVEKL*
Ga0066640_10410481Ga0066640_104104812F080856MARQESVVVFMEIDLLGKSVNAPKFLGILEKEFDWFVSYTLMLAEKHFEDPESKRIFIAVVLVGDYVWDIHTVRFEEVTYEKDRTKRRKIVAPTQAVLQNVMKELRVAYEKAKELPPQIRRRLEETKTGQ*
Ga0066640_10418129Ga0066640_104181291F016112EKVRNICGITKEQINDIVIHDMLEQTDRKVRDRVYTFRRLTMHMDKIATNKIRFDVNKIGDGNMDTSIDDTDIFIYRMNEGVYELFPIEKLDILSNEITFQTDIGENYEMIAEYFEDNFHFSIDTLSDASSLFAAAMCMRSLPLVEEDNNAKEYERRAKEIITRSSASFI*
Ga0066640_10423074Ga0066640_104230741F001003MILLIQMKKITMEKFKKFKIENKDFVLPQNLSAKEKDIFMYIFRLLRQKINKGIYPELCNNEIIYSKSDMKNLISKGIIIFMQYKKGWIITINPTFSTKNVQCSWCGAKFNEKIYFRQKRMRCPSCMSGMNGSTVAEKFEDKTEIKEEIYDIETVRTDIENVCIDTKIIPFQTSKADGLN
Ga0066640_10439196Ga0066640_104391961F102531QTIPIQPQKTIAQINQEIDNLVARGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK*
Ga0066640_10461017Ga0066640_104610172F096615MTGIYGNNPEDKARQCELDTYLKSAYRLNDDDERIKELARDKFNSLPSFYSPVNDKHRYTYMDDAMGSLKQEELIALARLLRDGEHLQAGKLLEASLMRILTAEAEEEIKDEQY
Ga0066640_10461081Ga0066640_104610812F069437MPVKIKKVDGYKVTHGGKVSAKKTTKEKAEAQARLLRGIEHGNWRPTGAKARTRKKGK*
Ga0066640_10478842Ga0066640_104788422F091328VAGGVFLYLKHQRTVLSNVAVEKSGDLPLELSVDFDPTVNSPKFMIESVDRQTKTFNLKSVFPPTFEGKSLTSRITCQEIKIVGPGDSVGEDVVYDVLMERMEGVSKEMMIFSGLCSDNTCAEINQSCRLYLAKVAP*
Ga0066640_10494104Ga0066640_104941042F091327CGWKPKTIVCKNITISDDEEAFANEFSAKVSEQNDTYVDTVLIELAIAQILQVHRVYVYSKEQKIPRDASRMIGTVLSTLREMNATKNARKVDNIQVNVNSDIMTLIQQNLNLISNDDSKKRNNILTK*
Ga0066640_10509901Ga0066640_105099011F043771MDEIPLKCECECGCGEDATTSDEGEALCEACAEYTVDPESGEVVCSRDPRAEEVTESCGAGGQTRSYWRLRPPESPAPSPNGEWACYWDTAGDGSRVVSRHETEAEAAQAVAAQDWPAPGDHTHYLCGFTVRRWDGEAWVVAAATL*
Ga0066640_10545307Ga0066640_105453071F080881EIEMSKNSKSAVALSELAVMPQFAAPVVEITPEVLSMIVMDIDPALIEAAELKEARLDEIRAKKDEAKRLIALYHEIAKTLNPLCDEYDSVEEERKLLKGVLEDALLASRITLANHPKVLENKAQIVKAAPNLMAEFNEKFNAAVIKQTQIAQADNIARMKALDASFAELDKKTAQLSKQYDEYKAL
Ga0066640_10563842Ga0066640_105638421F043249LIRVDGSGDLRQGNVGVFGAVQSRSQLFVRQGADVAVSNLTTGGFFPSDQTFVTLAVRVWTYFRFNVESQRTDAQNTTGPVASLAGVTADRIQRVHKLYHQAENQLFWQFIAGDKPQLTTFTAYTPAAGGLDGFFSDTRLPRANNGVPTSAALMRLARPILVPPRQGFQVVAIASPIGQAQGA
Ga0066640_10575821Ga0066640_105758211F076867YIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAAGEIARFKVGDVFKWFYVKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHVAPKLYQQDPKVICEMLDQEIRYIIEQFAG
Ga0066640_10596533Ga0066640_105965331F068439MKSEHESVDTKSTQDKKKICEACQKRETEENDSIIKNVEEIEIYDRKKTGKNYSYHIFFYTIENECFFEYYLYNDIKRFNKERTNFLSLLTDENKKKVYDFERKMHEKYPEYLYKMKNKKVTYPEYKNIKEYRISENYTVMFFTIGQHAIFQYFEDDGLI
Ga0066640_10632846Ga0066640_106328461F007959KQEYKKDFDIPVLSTKEKDIFVYLFLLLRRKMSKGIFPELHNSEILFSKSDLKALVLKNIVIFQNHKKGWIISINPKYITKTTECSFCGAKFNEIVYFRRNSITCPGCGFRIHGLVTAKSITNIEKVEVIPKVTTSVVKVPTEHVITDIPGNLKITDIVLAPTAMERT
Ga0066640_10634352Ga0066640_106343521F049412MKNNIISGEITSVFPELNCFEIDGYVFFNDVKASTVKKLKLGEKVSIEYKKKKIKSGNWSFTDFIFLKFKKIITNKQNNNGKQKKECR
Ga0066640_10634352Ga0066640_106343522F017787EKIIREGIHSETKEKYALGVRARFQVNFQYFEISKHPKFDDECVYLSRKFFFLKNNITDDERKEIEKFENEILDKFYYGK*
Ga0066640_10635271Ga0066640_106352711F048100SDDIDRMNLEFYNMVGNTYGPQTILEQHRTTIKIDTFRRDIGKRWAENMKKREEIYEIIDMLYELAKIETENLDAERSKQMSWAEIRQKIQEKMIKTLSR*
Ga0066640_10643367Ga0066640_106433671F016112EKVRNICGITKEQINDIVIHDMLEQTDRNVRDRVYIFRRLTMLMNKIATNKIIFDCDKIGDGNRDTSIDTTDISIYRRNNGVYELFPIQKLDLLSNEITFQTDIGENYEMIVEYFEDNFHFSIDTLSDASSLLAAAMCMRSLPLTSQTNNDAKEYERRAKEIITRS

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