NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004106

3300004106: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (version 2)



Overview

Basic Information
IMG/M Taxon OID3300004106 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111384 | Gp0097055 | Ga0065180
Sample NameGroundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size532534014
Sequencing Scaffolds24
Novel Protein Genes25
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Moranbacteria → Candidatus Moranbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_39_101
Not Available9
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus fulgidus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDevelopment Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002652Metagenome539Y
F003801Metagenome / Metatranscriptome467Y
F006336Metagenome / Metatranscriptome375Y
F010381Metagenome / Metatranscriptome304Y
F014684Metagenome / Metatranscriptome261Y
F016244Metagenome248Y
F031713Metagenome182Y
F038776Metagenome / Metatranscriptome165Y
F040370Metagenome162Y
F041590Metagenome159N
F042051Metagenome / Metatranscriptome159Y
F042954Metagenome / Metatranscriptome157Y
F048766Metagenome147Y
F055778Metagenome / Metatranscriptome138Y
F060838Metagenome / Metatranscriptome132Y
F063344Metagenome129Y
F071164Metagenome122Y
F080881Metagenome114N
F083694Metagenome112Y
F093503Metagenome106Y
F094469Metagenome106Y
F096147Metagenome105Y
F102531Metagenome101N
F103138Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0065180_10008509All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3635Open in IMG/M
Ga0065180_10011195All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3128Open in IMG/M
Ga0065180_10012756All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2918Open in IMG/M
Ga0065180_10014900All Organisms → Viruses → Predicted Viral2673Open in IMG/M
Ga0065180_10017744All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2429Open in IMG/M
Ga0065180_10044462All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1443Open in IMG/M
Ga0065180_10047138All Organisms → cellular organisms → Bacteria1395Open in IMG/M
Ga0065180_10050755All Organisms → cellular organisms → Bacteria → Proteobacteria1337Open in IMG/M
Ga0065180_10065018All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Moranbacteria → Candidatus Moranbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_39_101157Open in IMG/M
Ga0065180_10088198All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage962Open in IMG/M
Ga0065180_10095524All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage917Open in IMG/M
Ga0065180_10115023All Organisms → cellular organisms → Bacteria818Open in IMG/M
Ga0065180_10119926Not Available798Open in IMG/M
Ga0065180_10138908Not Available728Open in IMG/M
Ga0065180_10159549Not Available667Open in IMG/M
Ga0065180_10185423Not Available607Open in IMG/M
Ga0065180_10190774All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon596Open in IMG/M
Ga0065180_10193839Not Available590Open in IMG/M
Ga0065180_10206629Not Available567Open in IMG/M
Ga0065180_10209447All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus fulgidus562Open in IMG/M
Ga0065180_10215391Not Available552Open in IMG/M
Ga0065180_10223137Not Available540Open in IMG/M
Ga0065180_10241285All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi514Open in IMG/M
Ga0065180_10250452Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0065180_10008509Ga0065180_100085092F094469MNKNALAKILQHPDKDEIISKLVIGISAKDIHDWLQAKYTNVSEYKFVIAEKSIKSFQANYLDIYNMINEDLAKSKSALAESTEDQLALSVQNNPTYKNKMLELAGKELDIRQIVTNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEAPAAQTVTHNVNVQVTEHISVFHDVIKEVLSQMDLETSLYFMEVFNEKMSKLKPPAEKDTQNTEMRLAEAKLLNEKIDKKINE*
Ga0065180_10008509Ga0065180_100085093F071164MRISEMLIAIASWLESPDNEAILLAEYDDDCLEVVANSCVQAAQLLKITAEAVEDIEPPEESKITPESIDELANLATAFDESGDPELKKQASVIDELLLTIASPPNAIVQRQDLVDRRLDELKKKYEQTGKDLAETNKIADSEKAIEKSQMTKQMEILEAPLSSRYCPDHPGAQIARVGEHMWQCELDKKVYNFETGFTLNNGNKVPGGDVANQTQALDIPYYAIFDSRSERMGNS*
Ga0065180_10011195Ga0065180_100111952F040370MATNNFFKSDLFAIHNMVQSSMIVYPKETILSTLRNYFSQDSYYHYSRDQWGFPNTTDHTDLPPGADLPVGAYGSTAVNNNLLSTRLFIGENFRHDGIYYPAILVKNGGSKYVPISINREKGSIQYEDIVYEDGYGNRTVVHHPAYFFTAGVWEGQVVIDVLSRSLRARDDLIELIGICFAEISVDSLYDVGLIVKPPSIGSPTESDDRNDKLFRQSITLDIRTEWRREIPIGNIIDAIFFTATFEDLSRPQAPVSPNITVNTEVNMVDILLNS*
Ga0065180_10012756Ga0065180_100127561F096147MNADGLKSEFVSKYIKDGEGKFYKFLMLYAVNKLMAISEGKYKGTSPELEFMDYYDRLIILYRREGQTVYRDLARLFRKAAHKIYRIMLKKDMTPRNARFLNLV*
Ga0065180_10014900Ga0065180_100149003F093503MKKYKVKIKHTDKEEIIKADSELEARVKFFEQNNLNYRHLAGKLEITLNNKPLQNNL*
Ga0065180_10017744Ga0065180_100177444F038776MSKFAINYSNLENTIYKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSADDGDYIVSIYEPDPLEKIANNWSVSINKMSGDMQISYKGDPLLRMAYNRLGIPRSELNKAEQYLPQKLADNKKLVKSLLNELNESAKKEVLSKYPELV*
Ga0065180_10044462Ga0065180_100444622F055778MLSSVDLPEPELPTTKTNSPCLIENETLSRALTLLSPCP*
Ga0065180_10047138Ga0065180_100471382F103138MQGTILLNYNENVKQVEEEEKSRFLRNLLEQMGVEVDDFWTSETALSIEQRIKLRSILATYGIQVIDDLDGHMQIYVERELVGEWFKSTYKLKRDLRELDPKKQLYMEMTINFWSIFEEQEK*
Ga0065180_10050755Ga0065180_100507553F083694MEVNRLEKLKNRQLARFLNHLKKTGQLTPGLESDVKRAYSFAFEDVEALILGLDKEKEDDNFKKA*
Ga0065180_10065018Ga0065180_100650183F010381NFSPICINFLKKYFFIQNHTLFSAMMYINLKLSEISNDPQFIANASLKCNTLTEVKNACELLYENAIIRSVTIVADD*
Ga0065180_10088198Ga0065180_100881982F042051DEGSNEMRLITQPFQYLVHKYKKEGDPGFGQKVNCSAVHGSCPLCAAGDKAKPRWLLGVISRKTGTYKILDVSFAVFSQVRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSAADQQIKDSVDFDDLKRRVTPPTPDMVQKRIDKINGVTGEAAEAAPTPSGKAAKAATKAAPAPVNMSEEEDESFPAYDGDQAK*
Ga0065180_10095524Ga0065180_100955242F031713MSNKNLTVDLKARKDVDGQTFYVGKLKCPVMIDCSEGAVFLVFVSDKGEEQLQIAPMDKKEDD*
Ga0065180_10115023Ga0065180_101150232F060838MTTFQYVQPTDEQKAIMQNFRDKYEALATELATLPSSRGLSLAITKLEESAFWLNKAITQNS*
Ga0065180_10119926Ga0065180_101199262F002652MKKTKASVDVIYTQVNEIRKKTFEKLFEKMRHAKVMEVDVQKRENDFFWEYIQKPISTQEERDDRDILKKVAHLGFADEWRAVFRERDEIAEISADIGELVGTRRKKNDAEKLAEWKEIFKKIEKKNKNTV*
Ga0065180_10138908Ga0065180_101389081F102531GTYGGQTIPIQPQKTIAQINQEIDNLVAQGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK*
Ga0065180_10159549Ga0065180_101595491F080881MSKNSKSSVALSELAVLPQFVAPVVEIAPEVLSMIVMDIDPALIEAAEIKEARLDAVKAKKDDAKRLLAQAHEIAKTLNPLCDEQDNVEKERKLLKDVLKDALLATRVALANHPEVLENKAQIVKAAPNLMAEFNEKFNAAVIKQTQ
Ga0065180_10185423Ga0065180_101854232F048766MKNKKNKIKHRSEETEEDKRIIDIICKLGGGFIEKKNNQKIKK*
Ga0065180_10190774Ga0065180_101907742F014684MTWKRYYYRIIGFALAGGGAGLVLDELIHGPFTITPANHEFWGIIAITAGLMLIAKKPHGKD*
Ga0065180_10193839Ga0065180_101938392F016244MAIPLIPAGIYILGGIRILASYGTHLLRFIAANPKISAGTATVVMVADALKEHEKNEQTRNSILQDIYTQNPELAQKIVSAGGFSFHPIENVFQIAISSAIIGLFVYAIIQKI*
Ga0065180_10206629Ga0065180_102066291F006336ILNAISELNRIAEKKKEKRVVTIQKKILANFSDTCVNFIREYFFIYNHTIFSTMKYMNIGLTQIRKDPRFIANAALKNTILSEVKTACDELLTACHPLQQPNEHVTALKLP*
Ga0065180_10209447Ga0065180_102094471F042954VRVRNGLYGFDFREVDLRRVEEDKERKTYNIKSLWQRSHEIINLAARGFKQTDIAEILGITPVCVSSTLNSELGQKKLSEIREFRDEEAKKTIEKIRVLTSKAIQTYHEIFDNEDGQATLKDRKGVADTVLLELSGLRAPTKIQSSSINMTLTSEEIEAFKSRGLKAAKESGFEPIDVTSQPIDE*
Ga0065180_10215391Ga0065180_102153911F003801MENTKESVYIFSVPIDKIKKHILNRSIAKINCIIYKTNKIRNMNYEFDRQMDIASPPKTDAEQEKKAKKIDNFQREIEKRWGEVWADKEEIRTTMTILYELSKIRRKYIGVAEEEQMSWADIRQEIQHKMKNSFCM*
Ga0065180_10223137Ga0065180_102231372F063344MKEPTYSEYQNIKKHKISIEYSVMFFTIGRCAFFRYFEDDGIEVSPIDRSCVLPMLSDEEIEKLSKFLNKIKKEYNKYIF*
Ga0065180_10241285Ga0065180_102412851F042954FLREVMQMEGVRTRRGLYGFEFRDIDQRRTSEDMPRKRFEIKALWQRSHEIINLASRGYKQSDIAEILNISETCVSTTLNSELGQKKLADIRLVRDEDAKKTSEKIRILTAKAIEKYHEIFDNEDGQATLKDQKDVADTVLLELSGLRSPTKIQSSSINMTLTSEEIEAF
Ga0065180_10250452Ga0065180_102504521F041590EVPAIPAQSVRIETRVRKPESKAFTVDIPSTRWIDTSDVPTQYRALVDRALLECAEGVLNGFVTSKATAGNPQIPVSLFTLDALLTSSATKRMTSAMLLGMWRNSMKYVMDVAPKLTAMVGSQLLRYQANIERHEKRLAALCSRNPEMSLSSADLDKIMVNLADDDA
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