Sample 3300004073

Overview

Basic Information
IMG/M Taxon OID	3300004073 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101401 \| Ga0055516
Sample Name	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	561339040
Sequencing Scaffolds	77
Novel Protein Genes	79
Associated Families	59

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5
Not Available	30
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. UW4	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Thiohalorhabdus → Thiohalorhabdus denitrificans	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuricella → Sulfuricella denitrificans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. HAL1	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium MD335	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → unclassified Thioalkalivibrio → Thioalkalivibrio sp. AKL11	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.13147	Long. (^o)	-122.265465	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F004052	Metagenome / Metatranscriptome	455	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005564	Metagenome / Metatranscriptome	396	Y
F005815	Metagenome / Metatranscriptome	389	Y
F008223	Metagenome / Metatranscriptome	337	Y
F009540	Metagenome / Metatranscriptome	316	Y
F016664	Metagenome / Metatranscriptome	245	Y
F016971	Metagenome / Metatranscriptome	243	Y
F018371	Metagenome / Metatranscriptome	235	Y
F018541	Metagenome / Metatranscriptome	234	Y
F021303	Metagenome / Metatranscriptome	219	Y
F023596	Metagenome	209	Y
F024001	Metagenome / Metatranscriptome	208	Y
F024115	Metagenome / Metatranscriptome	207	Y
F026568	Metagenome / Metatranscriptome	197	Y
F026910	Metagenome / Metatranscriptome	196	Y
F031502	Metagenome	182	Y
F034932	Metagenome / Metatranscriptome	173	Y
F038247	Metagenome / Metatranscriptome	166	Y
F040109	Metagenome / Metatranscriptome	162	Y
F040632	Metagenome / Metatranscriptome	161	Y
F041207	Metagenome / Metatranscriptome	160	Y
F042909	Metagenome	157	Y
F045180	Metagenome	153	Y
F045540	Metagenome	152	Y
F045766	Metagenome	152	Y
F046383	Metagenome / Metatranscriptome	151	Y
F047065	Metagenome / Metatranscriptome	150	Y
F051143	Metagenome / Metatranscriptome	144	Y
F054044	Metagenome / Metatranscriptome	140	Y
F054877	Metagenome / Metatranscriptome	139	Y
F055829	Metagenome / Metatranscriptome	138	Y
F056708	Metagenome / Metatranscriptome	137	Y
F058158	Metagenome / Metatranscriptome	135	Y
F061020	Metagenome	132	Y
F068850	Metagenome / Metatranscriptome	124	Y
F070125	Metagenome / Metatranscriptome	123	N
F070128	Metagenome / Metatranscriptome	123	Y
F070270	Metagenome	123	Y
F072876	Metagenome	121	Y
F073723	Metagenome	120	Y
F074891	Metagenome / Metatranscriptome	119	Y
F074893	Metagenome / Metatranscriptome	119	Y
F076109	Metagenome	118	Y
F077317	Metagenome / Metatranscriptome	117	Y
F081352	Metagenome / Metatranscriptome	114	Y
F084254	Metagenome / Metatranscriptome	112	Y
F084255	Metagenome / Metatranscriptome	112	Y
F087210	Metagenome / Metatranscriptome	110	Y
F087398	Metagenome / Metatranscriptome	110	Y
F088283	Metagenome / Metatranscriptome	109	Y
F088916	Metagenome / Metatranscriptome	109	Y
F088949	Metagenome / Metatranscriptome	109	Y
F090407	Metagenome	108	Y
F092076	Metagenome / Metatranscriptome	107	Y
F093357	Metagenome	106	Y
F098856	Metagenome	103	Y
F104552	Metagenome / Metatranscriptome	100	Y
F105198	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055516_10001059	All Organisms → cellular organisms → Bacteria	2385	Open in IMG/M
Ga0055516_10002024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2074	Open in IMG/M
Ga0055516_10002066	Not Available	2062	Open in IMG/M
Ga0055516_10002209	All Organisms → cellular organisms → Bacteria → Proteobacteria	2031	Open in IMG/M
Ga0055516_10005693	Not Available	1608	Open in IMG/M
Ga0055516_10007209	Not Available	1513	Open in IMG/M
Ga0055516_10010260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1378	Open in IMG/M
Ga0055516_10013183	Not Available	1287	Open in IMG/M
Ga0055516_10014130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1262	Open in IMG/M
Ga0055516_10014473	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
Ga0055516_10019551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1148	Open in IMG/M
Ga0055516_10022533	Not Available	1101	Open in IMG/M
Ga0055516_10023340	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1089	Open in IMG/M
Ga0055516_10024983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1067	Open in IMG/M
Ga0055516_10025360	All Organisms → cellular organisms → Bacteria → Proteobacteria	1062	Open in IMG/M
Ga0055516_10028966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1018	Open in IMG/M
Ga0055516_10033016	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
Ga0055516_10034851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	959	Open in IMG/M
Ga0055516_10035799	Not Available	951	Open in IMG/M
Ga0055516_10036576	Not Available	945	Open in IMG/M
Ga0055516_10039202	Not Available	924	Open in IMG/M
Ga0055516_10042580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	899	Open in IMG/M
Ga0055516_10044137	Not Available	889	Open in IMG/M
Ga0055516_10045562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix	880	Open in IMG/M
Ga0055516_10047809	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
Ga0055516_10049095	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	858	Open in IMG/M
Ga0055516_10052917	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
Ga0055516_10059059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	804	Open in IMG/M
Ga0055516_10062081	Not Available	790	Open in IMG/M
Ga0055516_10068585	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
Ga0055516_10068941	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
Ga0055516_10069511	Not Available	759	Open in IMG/M
Ga0055516_10071332	Not Available	752	Open in IMG/M
Ga0055516_10071391	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	752	Open in IMG/M
Ga0055516_10073734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	743	Open in IMG/M
Ga0055516_10076155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	734	Open in IMG/M
Ga0055516_10080103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	721	Open in IMG/M
Ga0055516_10080466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	720	Open in IMG/M
Ga0055516_10081337	Not Available	717	Open in IMG/M
Ga0055516_10089735	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
Ga0055516_10090527	Not Available	690	Open in IMG/M
Ga0055516_10094483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. UW4	679	Open in IMG/M
Ga0055516_10096631	Not Available	674	Open in IMG/M
Ga0055516_10102712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	658	Open in IMG/M
Ga0055516_10102963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Thiohalorhabdus → Thiohalorhabdus denitrificans	658	Open in IMG/M
Ga0055516_10103251	Not Available	657	Open in IMG/M
Ga0055516_10104128	Not Available	655	Open in IMG/M
Ga0055516_10107866	Not Available	646	Open in IMG/M
Ga0055516_10109886	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	641	Open in IMG/M
Ga0055516_10110234	Not Available	641	Open in IMG/M
Ga0055516_10114659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Thiohalorhabdus → Thiohalorhabdus denitrificans	631	Open in IMG/M
Ga0055516_10116060	Not Available	628	Open in IMG/M
Ga0055516_10116415	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
Ga0055516_10118429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuricella → Sulfuricella denitrificans	623	Open in IMG/M
Ga0055516_10118900	Not Available	622	Open in IMG/M
Ga0055516_10125507	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
Ga0055516_10129989	Not Available	601	Open in IMG/M
Ga0055516_10131142	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
Ga0055516_10133998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. HAL1	594	Open in IMG/M
Ga0055516_10141811	All Organisms → cellular organisms → Bacteria → Proteobacteria	581	Open in IMG/M
Ga0055516_10145203	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
Ga0055516_10145300	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
Ga0055516_10153688	Not Available	563	Open in IMG/M
Ga0055516_10155727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium MD335	560	Open in IMG/M
Ga0055516_10158836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	556	Open in IMG/M
Ga0055516_10161315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	552	Open in IMG/M
Ga0055516_10161502	Not Available	552	Open in IMG/M
Ga0055516_10163515	Not Available	549	Open in IMG/M
Ga0055516_10166778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
Ga0055516_10171601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → unclassified Thioalkalivibrio → Thioalkalivibrio sp. AKL11	538	Open in IMG/M
Ga0055516_10173074	Not Available	536	Open in IMG/M
Ga0055516_10174415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	535	Open in IMG/M
Ga0055516_10185897	Not Available	521	Open in IMG/M
Ga0055516_10186978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	519	Open in IMG/M
Ga0055516_10189923	Not Available	516	Open in IMG/M
Ga0055516_10191023	Not Available	515	Open in IMG/M
Ga0055516_10202576	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055516_10001059	Ga0055516_100010592	F045540	MELKKTYGSTSAISMGGEMIKYFFTVSTLLDSKSKIKKHYSPDTVIADLFDEDLNEIDFINSLSELELVYGFEIPEELYDRTDLTLGEFAEELSQLPLISDELYPEFFDIKFTSMKLTKRYIELETKTDDESVSEMQIINEKFEELDDSLNVLLGNTLAN*
Ga0055516_10002024	Ga0055516_100020242	F004928	MEQAIHSIHSEPAHTVEIVVHISEGLDELQRGNLVAALNNNAGIVAAEFCPLRYHLMLVRYDKDLYSSQDVLDHVKSQNVTARLIGPI*
Ga0055516_10002066	Ga0055516_100020662	F092076	LDGQISIIKLGAMFSHKIDKLQEIIFTQASGTPTTVTMMDHIQNVMNDPDFDAKYNSIIVLEEHTHIAGVPTEKIETIRRVLDGYAQQRTGRNWAVVAPNERLEAFVKLNLELISPVIFNIRIFRSEEDALNWIKGR*
Ga0055516_10002209	Ga0055516_100022093	F008223	MQLFKRLFRKRPRQPSAGEQAAAVLHRFTTATIMGVDREDLGRYPAKQRKVMAFHYGAIRCLAREFALDETETLAVFVMFVNRYFNLPVSETGSISERLQGFQDNPEERRYLVAGEDVFRRWHEQGERRAPLELGEMLQA*
Ga0055516_10005693	Ga0055516_100056933	F005564	MNKIFIALMVIFFLGDPNMETLTWLGDIRNYVVAAAVALCSMPFIVSQLDG*
Ga0055516_10007209	Ga0055516_100072092	F090407	MDKTLTGALMVLLLGLIAFVFFSWSNTRSARRHTKAIFQQQHLVRTSPDAHRLSQAVHLLRPSVHLGFDYVIEQTAGKLPYITEWHTGGSMPTPEELDEALKKVTAIESTGYAAMRRSEYPSIEEQLDAAFKARRGDPSEQNELDIRIQQIKEKYPKTDDAL*
Ga0055516_10010260	Ga0055516_100102602	F034932	MRCLMRRVRIESDSHDRIAGFVAGVEWVNDSAVTVVDLDYRGRTAFAALEDLDGDGEDAVLSLTVNSIDGKE*
Ga0055516_10013183	Ga0055516_100131832	F004052	MRTFSVIAYIALAALLASCDQQQSTSDIDPGLGRECFESQRASLPPGTQYEGIDQVAGNRLTIKIMNGVDVKKIDCALDPDGTLPGIHK*
Ga0055516_10014130	Ga0055516_100141303	F073723	MSGFTALERLLLPLVRRFVSLWVRPSVLPDDVHERLAASPPVVYALEKRSLVDVAVLEF
Ga0055516_10014473	Ga0055516_100144732	F009540	MSRAKWLALAVCLALPAGATGQDLPSGPETEITIDKTTHLAGGVGFAGPLGFAANVQLLHGLGADVREDGGRVRASCAVPIPHCAGGFLVQAAAGSGGGKLSLGVGARARVEEEDFNGTVGVGLRAAFVRTWGNPIGTEPGLSYLGPELDLAILRVNLTLGVLWRVSGHGGKSALFSWGLGFGI*
Ga0055516_10019551	Ga0055516_100195512	F051143	MMDKFMRPEELERIKTMSTLEAVAYANRLSNRLKCDDCTDEERQDGVDLLGRLAERVSFLKITLEPPTFCRLGWKYFAESGRT*
Ga0055516_10022533	Ga0055516_100225331	F074893	MGPGQLHAVAGDGALTIRINGPMDLLLTMPLREYCHNSGAAYRSYIVDFQNVSIVRDSGLALLLMLKRWTNRAGATLS
Ga0055516_10023340	Ga0055516_100233401	F093357	MKKFEQAWRIKRLLAEMGENISSLSRKLNRPFGSVANNIYGYRASAQLQKEIADFLGRPVAELFEGA
Ga0055516_10024983	Ga0055516_100249833	F074891	MSAVTHDVIVKRRPGKKRRKSMSALRKLRNALARRRLEEMHEEELLQEQIYDVFADPEKSK*
Ga0055516_10025360	Ga0055516_100253603	F005815	TIDDAATVIDFLDLLRDALWETYGNQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0055516_10028966	Ga0055516_100289663	F004052	MRIITVIVQLALTALLASCDQQESAPDIEPGLGRECFESQRASLPPGTQYEGIDQVTGKRLTIKIMNGVDVTTIDCALNPDGTLQVIDE*
Ga0055516_10033016	Ga0055516_100330162	F040109	MTLITFIALQTPPTGPAIGPPGDLGQLLVWVAVPAAILGALAAGAIKRAVLSRPRFRDHRPGLRTFVWVGLADLVVWAVLWPALLAVRLQGISSNRGLWVLALLMVVALGYIANRYGFGRAFDPSVAGNVRGTMLAELFTILMPVLAVVFGIVIFFALGMWGNP*
Ga0055516_10034851	Ga0055516_100348511	F040632	MGNSTEHTAAFEIEDLRDPASTQDMVHVVVATREEDLLWAVFDGFCELPTVRVTGCSTLPQTRQICAADPPTYLIIDVGLLEHEPMDLITLANLSDSQCHIVALTNHPVFEIGARFGNARLTFLQKPVSAHDLLLLLRLRIGDGMQRAKVC*
Ga0055516_10035799	Ga0055516_100357992	F004052	MRPLASIIQLAVAVFLCSCDQQHPAANIDPKLGLDCFESQRASLPPGTQYEGIDKLSESRLTIKIMNGMDVVTLDCGLTPEGILQATGK*
Ga0055516_10036576	Ga0055516_100365761	F104552	MMICRASTLFLSRLAYYQLWTLLLLGLLVPAQAAEALNPDALPQAQATLERLEEQLATARTANAQELKTLRKEVATVRSTAQDCLQQAEPKIEILDSELAILQPAKPKDTQKKTADEAQPAEQAEAPVSPAIAGQLQELLSSKASLEGRIAICKLLLLKSNYLDSNVDDYLRTVQTRQLLARGPTLVSVLQANLDERKHWLDFTSQLAVTSTGWDAIRPIHLAGAVAVGLLGFILGRIVPRRLRVRAARMKVGEEE
Ga0055516_10039202	Ga0055516_100392022	F026910	VLSWWDIAQQCLSDDYGSLQDGFLASVFMLILGVERVFHLDEMDDPGFALLTGNRRRCPSRHVVGAWRKHLVWNEVDRFCHRTSPWDLLHDQESLLSFDEHSIPRWTKKFSIPKGYITTRNKYMRCEKLYCGYDLRQRRFVTIKATPGKVELRDVSSLLTRRMLRFGQPASLHAVFDAGAGKSDADVRALLTLAATTPNLDVTLRACRYPHRVKIWKQLPPDAFT
Ga0055516_10042580	Ga0055516_100425801	F088283	MKNRVLLFVPFLAACAGCATDADVAGMYVPSCVAFEGNTIELTDQRFTWDKFTDEVTVDAAGNEVDPFPGFPVRGTYTIENDVLHLTTDVGDLAALLHLVRRPGQVYLLTVTEFEAWQKG
Ga0055516_10044137	Ga0055516_100441372	F081352	IFLLDHFSRIYYDPRLMFSAVVSLMIRLIRKIAAITLTCFLVLNLAAGAAVGVEHCPSSMGSSGPMDMDPCDGMLNFAFPMKGCCEDCNDIFCDLMKNPLQDANAVYASAFQGSCYPFILGTVNPIAESGAWVASSAPRYPFWAAPAGSQIPLYIENLALII*
Ga0055516_10045562	Ga0055516_100455622	F045766	MCEAQEQLERVIARMQVIQRAIRSSGQPASMFELQELTDLGREYARLVDDLAKTLTGPSQAG*
Ga0055516_10047809	Ga0055516_100478093	F047065	MTNLLNKFTEAAKVVSSSKTHMWECVYGAYVDHLSDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEASYIANDIMYMADVISSGLRKP*
Ga0055516_10049095	Ga0055516_100490952	F076109	MGVLFNILFVIAVIATICCLCVFIGGLFIWFQKNELPDIEEF*
Ga0055516_10052917	Ga0055516_100529172	F026568	MHKPSPHKELYDPNYHYTRGVLYFDEERYTFTAYRVPYQELDNKSWKTEKAFTADYRRMIERKYSV*
Ga0055516_10059059	Ga0055516_100590592	F024115	VLWFIAALGLAWGINQWRQQAAARGLEAAQEGDRSAAEAWVDRALRESQCELHEARAYLASGGTRQYVRRPEYVETFVDKLYAGGAEGIEVCESDALGFRFAHYLLVTLPHDSAKHDQLIADAESLVRRDAVVYRGVTSEEVENIVRTSTLVGTRRVLVDLPVEAD*
Ga0055516_10062081	Ga0055516_100620811	F061020	MRQHQILTFATLVGSLLFAAQANAGAVTDLYRSGAYGLPWSATKDAIQAKYPGGKWVQNDKGQEQYCAASKQTLLKLPAPHQSRELCFVIGSDGTLASATAVMDASLPSLLAIVNRCRTTFGDFDAVVRDQQAIQSRSTAMLWTKDKQYVVRIVSENDSDGRPLMVSYTVADEPGMYTDG
Ga0055516_10065981	Ga0055516_100659811	F098856	PSAHVPSQQDRANASRLLAYLREQGPEVFVPSHPYYSVLAGGSGHLHIMGVNDVYSWPRTITSDPGRDTAIKDRFRESLMSSFRSRRWKMVIQDDCSTPRLFGLRRYYRLVEDLARSGKAPRSLTGYPCAPRYVWVPRANDS*
Ga0055516_10068585	Ga0055516_100685852	F042909	MVEFLTFIGSLNLGTFIVIWTSTIFLVIFISLLLVYVSQMNKETIRLSKNVKILIEELSEKNLKLGDDDL*
Ga0055516_10068941	Ga0055516_100689412	F072876	MEMSKQSYSDVMAMPVKRFQDYMKWKTDLEEEKQKMLLEGVGKKK*
Ga0055516_10069511	Ga0055516_100695112	F074893	MMASNGLQAIANNGALTIRITGPMDLLLTSALREFCHGTGAVYRRYIIDLQDVSIVRDSGLALLLMLKRLASRTGATLHVINGSTDLMRRCLRLGIS
Ga0055516_10071332	Ga0055516_100713321	F005564	MHKLIIGLMVIFFLGDPSLQTLAWLGDMKTYIVAAAIALVSIPFVVSQLDG*
Ga0055516_10071391	Ga0055516_100713911	F055829	EDTKGMWEDAQEAIDLAEQETGTRLPLSILYTTEGDLMGAKPAFAEAALRITQHELNSCGIPDTAKVGIILGEHGFPPGNEEDDVIDLNMERVRQNMRLVYERELPKLRPGVTEFCFGMNEFNNHPDSWHLSSMECMVDYLHRGFDVIIFQPYYFINETIDLFEHLRHWAYEVDGIDEHEFHGGHEIAHNYRSDFNFRGARIIITGSLLGRYEKEGQLPLIREAYTLFKDSIVETVIKKLKSL*
Ga0055516_10073734	Ga0055516_100737341	F018541	MYSPKMRSFWVDFPLTDEQYSKLDLRWRRRQNFYEIKNEPPPKVRISSFCTFGGEDYKILSLEARGDIDAYHEALKVMEQWIIDNLGPF*
Ga0055516_10076155	Ga0055516_100761551	F068850	MQPQQCLRLLLVVVALWVLPASGEEQLEQETISIKGNQGLPKTLYIAPWKRVGAPLASGQLEGDVGKETEPVERDMFQRELELQRQGYSVE*
Ga0055516_10080103	Ga0055516_100801031	F074891	DVVLKRKPGKRRRKGMAALRKLRRALARKKLEEMRDDELLKQQIYDVFAEADDAENA*
Ga0055516_10080466	Ga0055516_100804661	F088916	MPSTTLDNVKGSELPKTWADKINIIPDKTYTVIIQPQDERQTLQKIMSRISHTAKTRGMTPDILENILGEKIKHVL*
Ga0055516_10081337	Ga0055516_100813371	F005564	MTESEMNKIFIALMIIFFVGDPGMETLYWLGDIKNYVVAGAFALCSMPFIISQLDG*
Ga0055516_10089735	Ga0055516_100897351	F070270	PGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKLRTALKL*
Ga0055516_10090527	Ga0055516_100905271	F004052	LVTFLSSCDQQHSTSGIDPRLGTGCYDSHRAKLQPGTQYEGIEKLSGNRLTIKIMNGVDVVTLDCGLNPDGTLQGNGN*
Ga0055516_10094483	Ga0055516_100944831	F023596	MTSKSLQTLLVAGAGIVALLFVKLMFDISRSMNEMTGYVGAMSQDIREMQNSMRTMNDSILRMDKSVHGLGQAFNQGSKQFQQMNPAGMMQQVLPDGGQRTR*
Ga0055516_10096631	Ga0055516_100966311	F054044	MISKYYSNSDIFSVPADRLGISHTVGVLVLVFALTALILLFVDSSFRSAPDQEECLQLVRALGLNSLSLAPSGRPLRNPGAIDPSIDLRFGPKFGRLPIDGADLF*
Ga0055516_10102712	Ga0055516_101027122	F054044	MKLNNPPADRLGFSNRVGILVLVIAVMGIILLFLDSSFRSAADQEECHQLVRVLGLNCLSMAPSGRPLRSIGAISPSIDLRFDPKLGRIHPDGADLILRVSN*
Ga0055516_10102963	Ga0055516_101029631	F016664	MDQVVQDKAVVNETKDAVEIVVHISESLENEQRNSLVSALEKKEGIFSAEFCPLRYHLMLVRYDRHQHSSQDVLSAVGAQNLQARLIGPI*
Ga0055516_10103251	Ga0055516_101032511	F084255	MESSRRYLLQAEIEYWHEMLKLNKNRVSRDRQEEMRNCLKQALRALNSQLVPEFRAAA*
Ga0055516_10104128	Ga0055516_101041281	F051143	MMHKVTREELERIETMTALEAVAYANRLSNRLKCDDCAHEERQNGLALLERLTERVGFLKITLEPPTFC
Ga0055516_10107866	Ga0055516_101078661	F018371	MDYSNIIQPNRLTNMQEMEVNVNGPDGANRLFMYTGMAEVELSGGLPHPRWSLEIICFDIGRKYDCDNGEQVIKVLANAALGGGRTDGVASFAGWQIFGAAGELDEDDCRVRMNIAAGARDTQAFLEQISFQVNVLAKINE*
Ga0055516_10109886	Ga0055516_101098861	F070128	VVMLLVGGFGSLSAGRLDATAIMALSLASSLILLDLAGKPEPRSVRAICGFALLATAVGAALVMVFEILSR*
Ga0055516_10110234	Ga0055516_101102341	F084254	RQSKRHPRADQVASALAMRGLPIAEKDVMTVFDQYDIEKKTPDSPYFDT*
Ga0055516_10114659	Ga0055516_101146591	F016971	MNQVAQHLPAEEKCAVEVVVYIKKDLGEDQQDLVISALEKTDGIIGAEFCVMRNHLVIAKYDKDMLSSQDVLKSFNSLNLDARLIGPI*
Ga0055516_10116060	Ga0055516_101160602	F054877	MKPVKSLRVLARYCPKTTDDLEPELSNLVGTEAVFSYHRYMDEDDTPYSNQWVLTAEDQRFGDYWFPECDLNILQEMHSA*
Ga0055516_10116415	Ga0055516_101164151	F056708	MSEMRKFLCWFLGHDRMQTGTAHRVCLRCGQREKRRHLGHVTAWEEVAGTAIRD*
Ga0055516_10118429	Ga0055516_101184291	F004928	MEQAIHNRENEPAHSVEIVVHISEELEEQQRRNLITELNSNAGIVAAEFCPLRYHLLLVRYDRDTYSSQDVLNRVNSHGVSARLIGPV*
Ga0055516_10118900	Ga0055516_101189001	F008223	MGIFGNLFTKPPRTPTAVKEVSRIIDRFATATSMGVDREDLGRYPAKQYQVMAFHYGAIEYLASQYGLDETQTLGVFVMFINTYFTMPITETGSISERLQGFRDKPAEHRFLEAGAAVFRRWHEQSERRAPLELGEMLQQT*
Ga0055516_10125507	Ga0055516_101255071	F088949	KAPVQEPQVDATQKVETDAYVPKYKVKPEFKQALIKAIGKYPFNQTAQIFQAVDVEFIDHNQLNQVVNVLGNFPYQDVAPLMSRVTDYVEQVVED*
Ga0055516_10129989	Ga0055516_101299891	F008223	MKLFSRLFSKKPAAPSPVEEVSRILERFATATSMGVDREDLSRYPAKQRQVMAFHFGAIEYLAREFQLDETQMLGVFVVFLDNYFIMPITESGSISERVQGFYDKPQEREYLEAGADIFRRWHKLNERRAPLQLGEMLKAS*
Ga0055516_10131142	Ga0055516_101311421	F070125	VTSAEDKRRWIEALAAYRDDSERLFGLVASLANLLDRTLVVETMESVLGVTAVHEGDCVIFDDFAIRFGSDDRVKSVFRTIDGTINGD*
Ga0055516_10133998	Ga0055516_101339981	F045180	LWLIARLWPLVPDASLRQLKRAVRPLFSPELTWSELAAFFVGWLVVAQAVFHLARRQRSVDTFLVVIAVVLVGRTFTSGNTLAVAELAAIALLLPVLVLMSRIEDRGRSALIAAALGTWLVAVALAPVLAESHRAVAELPEVGEYLRRNAPPASQLAGKAFSYVALAWLLAGTGLLPHVAAGVTVLFVLLLGLLHVG
Ga0055516_10141811	Ga0055516_101418111	F068850	QAKKCTCPLLLATLLWVLNASGQEQLEQETISIKGNQGLPKTLYIAPWKRVGTPLDSGALEGDIREETEPVERDIFQHELELQRQGYSVD*
Ga0055516_10145203	Ga0055516_101452031	F087398	YGPGTRIDAQFLTPVQLPAKVAVKEWREEGQVKRALCDVRTGRVHMYACWAA*
Ga0055516_10145300	Ga0055516_101453002	F031502	MNNRFRLGDRRLDRAMPKLPFKDSNGAIIKQCRRTIPDRRLGNIQVEWIEEVMI
Ga0055516_10153688	Ga0055516_101536881	F076109	MGVLFNILFVIAVIATIICLCVFLGSLFNLFKKNEMLDIEDV*
Ga0055516_10155727	Ga0055516_101557271	F045540	VLNLVPASSSHFGLPLDSKSRIKKHYSSDTVISNLFDENLDEIDFIKSLSELELVYGFEIPSELYDKTNLTLEQFANELSLLPVISDELYPEFFDIKFTSMKLTKRYIELEEKTDAKSLKEIQMIKEKFEELGDRLNVLLGNILVN*
Ga0055516_10158836	Ga0055516_101588361	F005815	MTMKVTRLTTYWTLDEAATVIDCLDRLRDALWETYGEQITKMHREDYDNRFQDINQCELGFDDDMPF*
Ga0055516_10161315	Ga0055516_101613152	F004928	MEQAIHNKENEPAHSVEIVVHISENLEEQQRRNLITELNTNTGIVAAEFCPLRYHLMLVRYDRDTYSSQDVLNRVNSHGVSARLI
Ga0055516_10161502	Ga0055516_101615022	F058158	YNMDQIMIEKQKSYKSDFTKTVADNIDIWKLHAREREQILTQIAKAARISRIRTWIELICMLGFIYYMLYDMYKDGDLDTIIKFLKYSRYF*
Ga0055516_10163515	Ga0055516_101635151	F051143	MHKVTREELERIDTMTVLEAVAYANRLSNRMKCDDCVHEERQNGLALLERLAERASFLKITLEPPTFCRIGWSQKNSPAPEAD
Ga0055516_10166778	Ga0055516_101667782	F038247	MKSVFFWSEDQARTHRKNNPKPRGIYLNLRQAAILTKPIQSVLFGY*
Ga0055516_10171601	Ga0055516_101716011	F016664	NTVEIVVHVSENLEERQRSNLIVALENKNGIVSAEFCPLRYHLMLVRYDKEQYSSQDVLSAVSGQKLQARLIGPI*
Ga0055516_10173074	Ga0055516_101730741	F077317	MEESVNRPVEDTIWYENDQPIQEFLGNFRKTAILEDDYPS
Ga0055516_10174415	Ga0055516_101744151	F105198	MKKLIFTLFLLLPASQVSAYFAWGIGQQSCIDFVTAKAEYDHARDRRTHLSQLNWIKGFITGINWSRNSDIAKDLSIETVDEWIDAYCRANTDKTIAEASAELVVHLEKQGQASE*
Ga0055516_10176550	Ga0055516_101765501	F087210	MRFLMGVLALAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVLVLALLLVAVRALKT
Ga0055516_10185897	Ga0055516_101858971	F008223	MGMLDRLFRKRPRPPTPAEEIGKLLDRFTTATIMGIDREDLGRYPAKQYRVMAFHYGAIEYLARQHELDETATLGIFVTFVNKYFNMPVTETGSISERLQGFHDNAQERRYLEAGIDVFRRWHEQDERRAPLQLGEMLKQ
Ga0055516_10186978	Ga0055516_101869782	F021303	DHSSEFVELVYRDAPAEYRRLMALERFRQELGRQNRFNHGKLYAYAEFVVFRREFRERFPDASPAACINAFSSLLLKNDISVTNLVEFVEGPDHRGQLLLNQPPAPG*
Ga0055516_10189923	Ga0055516_101899231	F024001	MLNRLVSKGSRKNKFTILGIQAPGRQNAKTQEYLDIPSFRNAVGRDASA
Ga0055516_10191023	Ga0055516_101910231	F041207	MMDAVQQKELERIDTLTVAEAVAYVNRLMSRLNRSDCSDEERQNGLELLGRLTERVRFLNITLAPLNSRTG*
Ga0055516_10202576	Ga0055516_102025762	F046383	MKSSFIALIQGILLGWTFIPGSAQACDPEQDGCLGCNDEELPVCLNLFVQEVCQSFGNLGNCDAPRIYDDVERHVLISTGSHMSHIRSMIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004073: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences