NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300003979

3300003979: Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B



Overview

Basic Information
IMG/M Taxon OID3300003979 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113900 | Gp0109516 | Ga0063037
Sample NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B
Sequencing StatusPermanent Draft
Sequencing CenterMax Planck Institute for Plant Breeding Research
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size81812881
Sequencing Scaffolds23
Novel Protein Genes29
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1
Not Available8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDiffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationMid-Atlantic Ridge
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006469Metagenome / Metatranscriptome372Y
F007121Metagenome / Metatranscriptome357Y
F010693Metagenome300Y
F015260Metagenome / Metatranscriptome256Y
F015611Metagenome / Metatranscriptome253Y
F020787Metagenome / Metatranscriptome222N
F024128Metagenome207Y
F025382Metagenome / Metatranscriptome202Y
F025588Metagenome / Metatranscriptome201N
F029236Metagenome / Metatranscriptome189Y
F037771Metagenome / Metatranscriptome167N
F041248Metagenome / Metatranscriptome160Y
F041257Metagenome / Metatranscriptome160N
F047303Metagenome150Y
F047304Metagenome / Metatranscriptome150Y
F049215Metagenome / Metatranscriptome147N
F054935Metagenome / Metatranscriptome139N
F054945Metagenome / Metatranscriptome139N
F062152Metagenome / Metatranscriptome131Y
F062154Metagenome / Metatranscriptome131N
F071317Metagenome / Metatranscriptome122N
F076483Metagenome118Y
F084713Metagenome112Y
F086145Metagenome / Metatranscriptome111N
F097500Metagenome / Metatranscriptome104N
F097507Metagenome104N
F099429Metagenome / Metatranscriptome103Y
F099438Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0063037_100280All Organisms → cellular organisms → Bacteria23547Open in IMG/M
Ga0063037_101165All Organisms → cellular organisms → Bacteria → Proteobacteria10855Open in IMG/M
Ga0063037_101214All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia10542Open in IMG/M
Ga0063037_102328All Organisms → cellular organisms → Bacteria6683Open in IMG/M
Ga0063037_102622All Organisms → cellular organisms → Archaea → Euryarchaeota6180Open in IMG/M
Ga0063037_104629All Organisms → Viruses → Predicted Viral3968Open in IMG/M
Ga0063037_104633All Organisms → cellular organisms → Bacteria3966Open in IMG/M
Ga0063037_105669All Organisms → Viruses → Predicted Viral3345Open in IMG/M
Ga0063037_106435All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales2991Open in IMG/M
Ga0063037_106635Not Available2907Open in IMG/M
Ga0063037_106685Not Available2893Open in IMG/M
Ga0063037_108474All Organisms → Viruses → Predicted Viral2355Open in IMG/M
Ga0063037_108484Not Available2352Open in IMG/M
Ga0063037_109803All Organisms → cellular organisms → Bacteria2073Open in IMG/M
Ga0063037_111679Not Available1775Open in IMG/M
Ga0063037_113199Not Available1599Open in IMG/M
Ga0063037_114885Not Available1436Open in IMG/M
Ga0063037_117135All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1256Open in IMG/M
Ga0063037_117539All Organisms → cellular organisms → Bacteria1228Open in IMG/M
Ga0063037_119214All Organisms → cellular organisms → Bacteria1126Open in IMG/M
Ga0063037_120218All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1071Open in IMG/M
Ga0063037_124217Not Available895Open in IMG/M
Ga0063037_127243Not Available783Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0063037_100280Ga0063037_10028017F041257MQEFKPNYRPLGSEEDDVVDPRSEQPDGPFDHERFKTLTVLAHAAGQVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNPFETLVLLLFTFQFSRNERFDLEMGKTEPIDRSHPLSKALMAWVWWDPSSEASRVDRFYPWEYGKERTSRMVAIASGLLPEPIDVTSSGDIPPSPPRTQ*
Ga0063037_100433Ga0063037_1004332F020787MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVIFNFEVNAGFDVEKGEINMEELRSYFDAADDVGKKFTDELLRSVFDLDDTGHIWKS*
Ga0063037_101165Ga0063037_1011655F099438MKKFSIISRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNQEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA*
Ga0063037_101214Ga0063037_1012142F047303MLLRLIHALFGAVLGAAIAFWFFDGFNWNLISICAGICGVLAFVWGEPFLERLKWWD*
Ga0063037_102328Ga0063037_1023284F062154MQSRRNAVGVNRVKVLSVVNARPERLVNSVANGVRAPSVVNARPERLVNRAVNGVRVPSVVNVRPDLVVSVVRVDHSSVAAVVREAQVVFCGCSL*
Ga0063037_102622Ga0063037_1026225F097507MKYCVVVAEKMHKKEKLGVMNWSDEWDKPCLIEQVQMRSDTGWIPSGGVSYGEHEAFSEKVWAQSMSKEEDSEEE*
Ga0063037_104629Ga0063037_10462910F099429MNKLLLLLIPFLLGNSAGGLGGLVILAGGAIIGLGVIIGIIWGLIKWLT*
Ga0063037_104633Ga0063037_1046334F071317MLKKITAVGLITLFAGMTAAPFIPLDDCNMPCCAGIATSCCEMDREITCATMSDCGSSVFMLIVSGPFHKSELKSSDIFSQRFVTDLGIPKIETNYIACLGNFDPGPIASMNLPLLI*
Ga0063037_105669Ga0063037_1056693F025382MANVVVQAAAATPNVVKVVQAGISASNVVQSTETRGTITVNAAVDVDSSTAPNNSLLIWNANTSRYELQAFTDLPIDAGTM*
Ga0063037_106435Ga0063037_1064352F037771VVRTSGPDLVVFDGYRGRHDGDRTAAAGLKALLGCEDSTYWNNCSDRGDSLKRRFDRASEWLELRLGNITDVNVIGLSMGCQLAVRFVHHASIKAPSIKFGQLLLIAPDPKYRPVGRDAEEIKAGTSSAFEEAVALWGGRGLAGPRFISGLADAANRMERTRIVYCRSDEVAEWSANVELMVDELPVTTGIELIEAIDGEVVSTEDMTVDLGVGDPELDVHDRLWESISFV*
Ga0063037_106635Ga0063037_1066356F047304MEIKAQNWGAVITNNMVTEKELKKLKKRAGGFVKCPTRKAQGSKNARWGQCE*
Ga0063037_106635Ga0063037_1066359F015611METTYTEFMEAKVKSWSDMKDRNVLKAAEKFKKKMRKDNVLGYTLAHQEFTIFRNEKEWNDSVKHGKDMKWIRVE*
Ga0063037_106685Ga0063037_1066851F007121MLLLFGFTTPTSGGWQIVLQDELQEPTLDKLIDWVPEEVPRTVSFYFDTDADGKFDIKIAYSLIEAFPCRQNCVSRITDNGDHWLLPAPGINYYVIKKWIVYRYVDDEDWRGEYKTQQ
Ga0063037_106685Ga0063037_1066857F025588MKTYDKFKKELTEDGMLHGEPGDENPSTTIHYSPNDPEIVRTASVTMTVPKYRLSESEKGCNHTCAHWRDSSWCNEYYFKCDSTYTCDSWKDSGI*
Ga0063037_108474Ga0063037_1084742F024128MITKKDTKEYLEKTKRILDRGNASLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRIVMGMPVLQFAGPEQDVRNLTEY*
Ga0063037_108474Ga0063037_1084745F076483MQMISSNKLGQIFRTATFVDRITKIRTLQTFLNDTTLDIPLMRRKVTELNMRWILRNVKVNNSEHINLNKIIKLIKEII*
Ga0063037_108474Ga0063037_1084746F062152MAGAHYTNDLVNHINILNQQTRDRGAVGFLTNDPDHWAEYGVYTIGDFQVYLEREHERNMYKNSLGE*
Ga0063037_108474Ga0063037_1084748F084713MPKLIIEKIQNKKTYGKDMYKAVKLIDSHRLSLLETRFDEPSMLRYIQSLPNTYNYEIKNKTGV*
Ga0063037_108484Ga0063037_1084844F010693MIAILVFSFVVLSTICLWLLIEQRKSWKFLIWFIPILLVLVSSTYVTYTSILGYPKVSLPQKGMYLKHHIDEPNWIYLWVLGKNNIPMSYQIVYSKGTHNALEGVKGKQEEGA
Ga0063037_109803Ga0063037_1098032F054935MKRRTFIKYTSLISSAVFLPLAQLFGAKPKPKNSLTTFISDLPLQGSPFRKNCDSLDHYNDISFETMIDDIVHYRTPAKLRDKLILGIKTKDD*
Ga0063037_111679Ga0063037_1116792F015260MKWTKEQLIEGSLSLVRMRSRLAMIEKKVKDKGIRMTYSERMDFRKKYSPLKKKIDDMDNEFLLNVAYNGVEGELDDSEPPPPDKEKQILKDTV*
Ga0063037_113199Ga0063037_1131994F029236MDIMDNSNFMNDVMKMIEEWLASSKAWLELESARLKLGAETRLWEAENEVFSPGAGCYDWEFIDEWV*
Ga0063037_114885Ga0063037_1148854F029236MEMKDNSDFMNDAKKIIEEWLASSKAWFELESARLRLEAETRVWEAENDVFSPEAGCYEWEFIDEWL*
Ga0063037_117135Ga0063037_1171352F097500MNRLEAAIEKEKGISYSQRDKDLFRSHILILIHQEQESKKFKRKLGLSLFLAVGTLSLLFSQINEIANDFTVGLSDAITGDMLTTIVFSYGLLFASLALLKKPDFIFN*
Ga0063037_117539Ga0063037_1175392F006469MAKIGQPPNKGTATAAGPDMNPPPYSEGEPKLKKYGPGVDGALGTTDHNGSIDNVISTQGGGWFG
Ga0063037_119214Ga0063037_1192142F086145MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV*
Ga0063037_120218Ga0063037_1202181F049215VRWLLIACVAYLVSCTEPMKYVTRELTIWNKYVSNGYDNYDDEIEVNLKLGSQDWFWLYDSGDRVKIYNNSSFNWQFEFPEDFDSLYVHARFYYTKDLIIELVVADTAIRMDSDKTLMFWNCGDTTVVEYPFPACLTAVDSL*
Ga0063037_124217Ga0063037_1242172F054945MKWVILIYLTMWTSTPDVKKYTRLEFPANDFHECIDIASQINDITNKGHNSDVPYVRSFYWVYINMLDEIKAECVFAKPSAPAPRWLNKKQTHNER*
Ga0063037_127243Ga0063037_1272434F041248MKQHGKRARQERAIERTEASILVYQEKLKSCKDDNEKKLLKKKIERAQTTI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.