NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003976

3300003976: Soil microbial communities from Barrow, Alaska NGEE-2011



Overview

Basic Information
IMG/M Taxon OID3300003976 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114049 | Gp0110078 | Ga0064219
Sample NameSoil microbial communities from Barrow, Alaska NGEE-2011
Sequencing StatusPermanent Draft
Sequencing CenterYale School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size3382450
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Ngee-Artic Barrow Site, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Ngee-Artic Barrow Site, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biome → active permafrost layer → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow, Alaska
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008314Metagenome / Metatranscriptome335Y
F011100Metagenome / Metatranscriptome295Y
F045442Metagenome / Metatranscriptome153Y
F071789Metagenome122Y
F086039Metagenome111Y
F090817Metagenome / Metatranscriptome108Y
F094346Metagenome / Metatranscriptome106Y
F094576Metagenome / Metatranscriptome106Y
F095392Metagenome / Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0064219_10169All Organisms → cellular organisms → Bacteria1764Open in IMG/M
Ga0064219_10944All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1803Open in IMG/M
Ga0064219_11086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1144Open in IMG/M
Ga0064219_11256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1768Open in IMG/M
Ga0064219_11620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2216Open in IMG/M
Ga0064219_11703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1560Open in IMG/M
Ga0064219_11863Not Available1169Open in IMG/M
Ga0064219_11976Not Available2748Open in IMG/M
Ga0064219_12151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1560Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0064219_10169Ga0064219_101692F008314LAEPPASESVEHPGQERSAFPSYEELSADLIEAIDQAGLFIEDVRHHLEPSVGERRFECTVRLSSGEPPSRYHVHLSFAWDALLTYVAAYGAGADCDLYHDDEEAEDCPHHQLPPQPFVELEAEFILGDGGYELHDIAEVSAWVDTVQELLAKVFRDEDRPSVHVGIASLGTTTLVEKFTAEHSWLLDFERPPDFEGIAHQVQNALRLIPQLADRLPI*
Ga0064219_10944Ga0064219_109445F045442VIPTRAGGVEYSRVVATLEMIGTRIPYGVIICAARLGTNDLDETVAWWTGSGVPIWGIIPERVGIAAGPETRLFREGLDAYGKVLRKALRKRAG*
Ga0064219_11086Ga0064219_110862F094346MSIATDSYIGPEVLTVAIPLGSLLLVILWGFFQRRTNRQ*
Ga0064219_11256Ga0064219_112563F094576VREQSATRQELEASIRALLPSKAEIDDLTPSKNSTASVAGVGGIMTGYVWGRYRGRQVRKRRES*
Ga0064219_11620Ga0064219_116203F086039MRIVDQIEQTGANRWGAKYADRATYGEVIAAQYGRAQIWKRITWGFYIVGLALMFAPVGNTLQYVGWMIATVGLFPLVCWLAERFKFRKAVKLATE*
Ga0064219_11703Ga0064219_117031F011100MGLAGMVLSAIAAVAGAIMYWAITYQGTGFRLSTVGLILMIAGAFGFVVSAIVFAVSRSPRSSTRHTIDREVVDSSGN
Ga0064219_11863Ga0064219_118632F071789MRRLLCVALFLATSIGIIVLPAAADTSSGKVLLSFDYSDNSAPASVSNGSFNVIVDVLPGDSTGLVRMFAVAPASTNASSIVCHFQWINQSQAECAFNFPDNGVWAIHAQYVLGPQTDVVGVAVTNLRVLN*
Ga0064219_11976Ga0064219_119762F090817MVDSEDAKDILAVIGLHEDADEDCNNALIDHETGLDSTTVDEVLDHLWKTDQIEGILTLGGRNPSLDSIRRVLPERDRLWGAEGKWRPYR*
Ga0064219_12151Ga0064219_121513F095392MLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFPSAAEMYLA*
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