Sample 3300003752

Basic Information
IMG/M Taxon OID	3300003752 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053073 \| Gp0101312 \| Ga0055539
Sample Name	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	100701239
Sequencing Scaffolds	61
Novel Protein Genes	66
Associated Families	46

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	28
All Organisms → cellular organisms → Bacteria → Proteobacteria	9
All Organisms → cellular organisms → Bacteria	3
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas manganoxidans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → unclassified Chromobacterium → Chromobacterium sp. IIBBL 290-4	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1

Ecosystem Assignment (GOLD)
Name	Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	USA: North Carolina
Coordinates	Lat. (^o)	35.6667	Long. (^o)	-78.5097	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008001	Metagenome / Metatranscriptome	341	Y
F012876	Metagenome / Metatranscriptome	276	Y
F023377	Metagenome / Metatranscriptome	210	Y
F023378	Metagenome / Metatranscriptome	210	Y
F024826	Metagenome / Metatranscriptome	204	Y
F026918	Metagenome / Metatranscriptome	196	N
F027546	Metagenome / Metatranscriptome	194	Y
F028856	Metagenome / Metatranscriptome	190	Y
F031516	Metagenome / Metatranscriptome	182	Y
F033107	Metagenome / Metatranscriptome	178	Y
F034241	Metagenome / Metatranscriptome	175	Y
F035339	Metagenome / Metatranscriptome	172	Y
F036775	Metagenome / Metatranscriptome	169	Y
F036776	Metagenome / Metatranscriptome	169	Y
F037289	Metagenome / Metatranscriptome	168	Y
F040130	Metagenome / Metatranscriptome	162	Y
F040670	Metagenome / Metatranscriptome	161	Y
F040711	Metagenome / Metatranscriptome	161	Y
F040712	Metagenome	161	Y
F044538	Metagenome / Metatranscriptome	154	Y
F044564	Metagenome / Metatranscriptome	154	Y
F044583	Metagenome / Metatranscriptome	154	Y
F045820	Metagenome / Metatranscriptome	152	Y
F047761	Metagenome / Metatranscriptome	149	Y
F049682	Metagenome / Metatranscriptome	146	Y
F049748	Metagenome / Metatranscriptome	146	Y
F049749	Metagenome	146	Y
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F052031	Metagenome / Metatranscriptome	143	Y
F053329	Metagenome / Metatranscriptome	141	Y
F055847	Metagenome / Metatranscriptome	138	Y
F056275	Metagenome / Metatranscriptome	137	Y
F058198	Metagenome / Metatranscriptome	135	Y
F060114	Metagenome / Metatranscriptome	133	Y
F062395	Metagenome / Metatranscriptome	130	Y
F062899	Metagenome / Metatranscriptome	130	Y
F070201	Metagenome / Metatranscriptome	123	Y
F076251	Metagenome / Metatranscriptome	118	Y
F077376	Metagenome / Metatranscriptome	117	Y
F078153	Metagenome / Metatranscriptome	116	Y
F080227	Metagenome / Metatranscriptome	115	Y
F080539	Metagenome / Metatranscriptome	115	Y
F090602	Metagenome / Metatranscriptome	108	Y
F092337	Metagenome / Metatranscriptome	107	Y
F095729	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055539_1000042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	199725	Open in IMG/M
Ga0055539_1000140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	74869	Open in IMG/M
Ga0055539_1000154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	66426	Open in IMG/M
Ga0055539_1000160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	63531	Open in IMG/M
Ga0055539_1000209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	45343	Open in IMG/M
Ga0055539_1000222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	40292	Open in IMG/M
Ga0055539_1000245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	35164	Open in IMG/M
Ga0055539_1000248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	34822	Open in IMG/M
Ga0055539_1000249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	34756	Open in IMG/M
Ga0055539_1000262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	32968	Open in IMG/M
Ga0055539_1000272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	30514	Open in IMG/M
Ga0055539_1000277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	29675	Open in IMG/M
Ga0055539_1000284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	28851	Open in IMG/M
Ga0055539_1000289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	28017	Open in IMG/M
Ga0055539_1000291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	27701	Open in IMG/M
Ga0055539_1000303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	26405	Open in IMG/M
Ga0055539_1000317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	25090	Open in IMG/M
Ga0055539_1000323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	24450	Open in IMG/M
Ga0055539_1000328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	23217	Open in IMG/M
Ga0055539_1000339	All Organisms → cellular organisms → Bacteria → Proteobacteria	21768	Open in IMG/M
Ga0055539_1000347	All Organisms → cellular organisms → Bacteria → Proteobacteria	20554	Open in IMG/M
Ga0055539_1000362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	19549	Open in IMG/M
Ga0055539_1000370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	18924	Open in IMG/M
Ga0055539_1000384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	17956	Open in IMG/M
Ga0055539_1000386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	17814	Open in IMG/M
Ga0055539_1000389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	17745	Open in IMG/M
Ga0055539_1000406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	16563	Open in IMG/M
Ga0055539_1000407	All Organisms → cellular organisms → Bacteria → Proteobacteria	16497	Open in IMG/M
Ga0055539_1000419	All Organisms → cellular organisms → Bacteria → Proteobacteria	15680	Open in IMG/M
Ga0055539_1000424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	15400	Open in IMG/M
Ga0055539_1000479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13077	Open in IMG/M
Ga0055539_1000736	All Organisms → cellular organisms → Bacteria → Proteobacteria	8222	Open in IMG/M
Ga0055539_1001120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5545	Open in IMG/M
Ga0055539_1001306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4873	Open in IMG/M
Ga0055539_1001548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4186	Open in IMG/M
Ga0055539_1001703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3881	Open in IMG/M
Ga0055539_1001835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3595	Open in IMG/M
Ga0055539_1002404	All Organisms → cellular organisms → Bacteria	2883	Open in IMG/M
Ga0055539_1002559	All Organisms → cellular organisms → Bacteria → Proteobacteria	2730	Open in IMG/M
Ga0055539_1003062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2400	Open in IMG/M
Ga0055539_1003233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2309	Open in IMG/M
Ga0055539_1005104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1716	Open in IMG/M
Ga0055539_1006371	All Organisms → cellular organisms → Bacteria → Proteobacteria	1509	Open in IMG/M
Ga0055539_1009109	Not Available	1235	Open in IMG/M
Ga0055539_1010433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1150	Open in IMG/M
Ga0055539_1011077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	1113	Open in IMG/M
Ga0055539_1012447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas manganoxidans	1045	Open in IMG/M
Ga0055539_1012778	Not Available	1031	Open in IMG/M
Ga0055539_1013827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	987	Open in IMG/M
Ga0055539_1014609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → unclassified Chromobacterium → Chromobacterium sp. IIBBL 290-4	957	Open in IMG/M
Ga0055539_1014771	Not Available	951	Open in IMG/M
Ga0055539_1014958	Not Available	944	Open in IMG/M
Ga0055539_1015553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	925	Open in IMG/M
Ga0055539_1017658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	862	Open in IMG/M
Ga0055539_1018006	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
Ga0055539_1018782	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
Ga0055539_1019965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	800	Open in IMG/M
Ga0055539_1026287	Not Available	675	Open in IMG/M
Ga0055539_1027985	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
Ga0055539_1030034	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
Ga0055539_1032351	Not Available	587	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055539_1000042	Ga0055539_100004224	F053329	MPNALENPSAHDPALSQDHAAGPRRDTLSPSERALAPEGDAPMQSPNATADDGTYVGQAGGYMGGASPAVDSGRAEVNDANRRGDGAYGFPVGPGVGMPGGEHQPAAQKPDELPPQYPQR
Ga0055539_1000140	Ga0055539_100014064	F092337	MSTLHTATFTLTIRDSSEDELEAAAAAFTCTLHRAGMTPEDALVAWQRMDEWERLNFASDADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEPAERPH*
Ga0055539_1000154	Ga0055539_100015458	F077376	MTTYVLSLTGDEEKAANATHWATFRKAKLLSVSRNPRDRASARLAGRDSIVITGQGPIDPPDARHASLTRHPQALAALLVRTLDIQDGAGVVLADFDSDEFAADVVAEIAALGREVTCSGRAANFAFSAVV*
Ga0055539_1000154	Ga0055539_100015467	F049748	MDIKQDPNAIPNFNSGGRLGEPQRNEPEQTQSSVELDPTAGGDGAASEAAEHESLGGEMVQPTGGIGGTGGADGRLDPTKTGPGAVDGLVGAP*
Ga0055539_1000160	Ga0055539_100016049	F058198	MTELLLVSLVLVALAVRTFQVRHRIAAWECLWRFRSGPCTVELRRHAGLARLGHDSLEFPQPREFRIVSLRIGGIPVWSQQAIVSLPTDADSRIGAIPASEFDHLFDRHFRRAMPRQATRRLVVRAH*
Ga0055539_1000209	Ga0055539_100020917	F044583	MAGERAEGMMMSELLTPNQEILRNRIRFALRRATGFVFDIDAMLRKPELRAKRIGLWRDVADHELSSLLDQLETEFQADAADHDDDADRTVIIHRPEAGAAHR*
Ga0055539_1000222	Ga0055539_100022223	F040712	MAGRSAARQNGLLLIRLTASMSLRCFIVRRCLHASLEAAGLRAVNLPLVVDARRHVHPPVPIDAGYLVVDRRAFARITFPRANGDAAAPMQTVGFASLSGVLRAICSERIGIAGRAAIPGPKRALELRREGRWSEVLEASERVEAPMRRRLDAWLRGWRFAAWRFALRAFKRL*
Ga0055539_1000222	Ga0055539_100022240	F024826	MADATPYFGIAPFVLGMTRELARAAAGKPDSVESTPDDDGFAVETWFYDGGEIELEFDPAPDAKLESITAWSAKTTVNGVAIIGAEVADLQRLAKEADIHDLALTDDFADSGQCWQSEQHGLMFWAAKGKVVNMTIFPRFDDSGEEPQWPE*
Ga0055539_1000245	Ga0055539_10002455	F049682	MDQREFEAVVDEFGADVQDLVELVETARYEQATAVEISRLLDAREDLLVLVNKLPALRAAEPPVEMNVPLASLRTRIAHAREALKSSHDSKEILQMVAETGETFATIVAPLQAAGRWPKGRSR*
Ga0055539_1000248	Ga0055539_100024821	F037289	MSTWLSNQSVSFAVVALEGWRAMHHKAASLVRPSVLRRAQTQMVRLITVVAGH*
Ga0055539_1000249	Ga0055539_100024932	F080227	MNTRHLITSATLALAFFSSGAFAADEGCRTVANGVQICDVHTGHERSRDAVVADLQAKADTSTGCRTNANGVQICDVPTGRERSRESVVAEMSAAPAYKIEGCRTVANGVQKCDVPSATSRADTAVAAAH*
Ga0055539_1000262	Ga0055539_10002626	F031516	MMHFDTAQMSAITQAHFFSRVAEFIRDQTTVPAYRQAALDTTLRTALWAPHWATLRDASEHDAALFMCFLLACATLGVDHTRAAEAVRQSSQPETSMKLFLSERGLLRFSAFDVPDLTRPGAEA*
Ga0055539_1000272	Ga0055539_10002727	F040711	MTSDSSRDRLAAALGPEAQHVVMERGYSLGFVGVHGQVRLFQFRLSKKGFSQDAAADDAQFVGMLDEFTGVVTRMLTERWGGIALRAAFDAEGELIQRIYEVGTLKRCDEVDPVSPAQELVKDGERVGARELLVRASARLVENWGSFQPSFDHASNDAALTTKLQQLVSGAVG*
Ga0055539_1000277	Ga0055539_100027728	F050419	MTNASRPTFLRNFGRGASSSHRPPDLADMGTAFALDEALEGGAIDSIVPGDPSPPPLRAAVPVAPWRLWLGRKLGA*
Ga0055539_1000277	Ga0055539_100027729	F070201	MRTVQLHSLTWGTITAAVGCAVWLSSSDQAALFCSVGYRATSQAMGIDIPAEPTRAGKSAQSAGSSAARQMQAEAG*
Ga0055539_1000284	Ga0055539_10002845	F023378	MSKTYVVSGCGMKFDAALWPVPAGVEIHFYFQCMREPQLYKTRTILDKLMLDVGMFPDRVAMPGDMIPSHFVWAHAGEQPPSGVFRRQTGNLAMDLADTDASRPVALSHIVKTLSADRSRSNTAIHWIVRDSEELADPSGLDCQYPPRLRAGGSDDGDESREMPLSGQMPLGQSRRMPLGMGPTEAWPGVRRR*
Ga0055539_1000289	Ga0055539_100028912	F056275	MDWHCIKFDRRGAHEAEAADLVLALEDAYGSAGEPAAAEVFMTHGRVGDYAFYLSPEAARMAPAVLQRFHAVLCEPPVDLHRCTPMIL*
Ga0055539_1000291	Ga0055539_100029125	F062395	LKRVVAGSHVHAETKTSFRYEAHWHVEGRLLTWKAQVSLPGRLWSLAGGTPEWTGGNEVKAVREDIARSIDGLQA*
Ga0055539_1000303	Ga0055539_10003037	F078153	MGWMLFEAMLALGVMLAVVWWTFRGRAERDEDEAEDSADRSQ*
Ga0055539_1000317	Ga0055539_10003172	F040130	MPGPVKRAVAIMAGVVLGMVIAAGASPWRELFRKTEPVPPAPIQRERAPDTRV*
Ga0055539_1000323	Ga0055539_100032317	F034241	MSQAKPRQYLGALRAALAAAKAVNKSRVAAYHVLPNGISCKMDWAGWSDPWYNATPRQQALLDVLQDLLDGGETEVPMIALKTALRLEIPESEILRSRDNVGADGESGYFFDDIMHGLYMLDAQETEQVFYGLIDRLMQPECGHAGLIDR*
Ga0055539_1000328	Ga0055539_10003289	F026918	MDSKQLFIEHLAGELQAMEVGRVPMNALRYRVHAKMLRKALDEATTPALLERQGGAHPQVVHALSNRFFEETGHLLQPNATAHKARSVLERTMASCRQARQK*
Ga0055539_1000339	Ga0055539_100033920	F045820	MTANAPTPRPRSDDRTRDDLPDGRNGRVVGENDDNVLESIGKAVVAPVEGADEGAEPVDGQHGRAFVDLTKTLPQGQQAAPRTPTAPKPQGKAL*
Ga0055539_1000347	Ga0055539_100034721	F055847	MNRRYAYRDYAILVTAQPSAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLELGRRCAESAIQSMDPAREKAGYRGLWH*
Ga0055539_1000362	Ga0055539_10003629	F090602	MQQHLMSAPAARVEWELLPSLLNRVSGRRLRSQPAWSETLPSELDLLEPSDPFEEVLPGLQMREVREPDIFQIFFG*
Ga0055539_1000370	Ga0055539_10003704	F040670	MNPLANRHNAAVDTGSPPADAPMQVLPWTEDSPRTIGAEDADTRYQGELFLPGWLKIELNPTAEQGPGG*
Ga0055539_1000384	Ga0055539_10003848	F033107	MRLLTSLALITIAYAALSRVNKVHTSRFAAKPQAKPEAVQTWEGEGGGLPSGGPGPGVKVEPKAVTDPDLAHGGV*
Ga0055539_1000386	Ga0055539_100038618	F052031	MTIDRHATHPATTEHHEEIVQFVFRSAASSGLLDRARALLDAAPRELAESFEQAVRTSGLAS*
Ga0055539_1000389	Ga0055539_100038920	F044538	RLIARFVVLMVAVFGVSLAFAWAWDKSDKPHDAAAQRAAS*
Ga0055539_1000406	Ga0055539_100040612	F095729	MPAADVAMPCNHSKETTVKIALRQIALVSTLLATAAFPLLSHAQDVRREDRVLHFLDSGHIDANKDGMVSKKEFMDAMSKTWDMHMSDAKKADPQMPKDKMTLQQYLEFSKMFGLNIGS*
Ga0055539_1000407	Ga0055539_10004078	F060114	MTSPLTELFEQQRIENARLSGQIVALEMAVKLLFMQHPQPNALAGFYSKAIDGLLDITLATRMPEEMRDALDQARNGLLEALRQQPTLGGG*
Ga0055539_1000419	Ga0055539_100041911	F062899	MNPLAANRTAARPQRPLPGVSRHCSFVEDLNWPAPRTPDRKPARPTEVWVPGPNGQWDGVTPTLQ*
Ga0055539_1000424	Ga0055539_10004246	F035339	LPAARLTLAQLRSDRILIWCWLPLGGFAMFGIVKAWQHVAGEPPPGLYTTLDVLWIAVTFALIARRSTARCPRCDHRWLRAFPWMSLRKVECGVCGHEMPER*
Ga0055539_1000479	Ga0055539_100047910	F036775	MYDQLDQMPAIDEIEDRPGQQRRRGMSDAVFYVSCCALALLPASLAAVLFHDLIGEPLLFLVAVVMITWVVTTVALVKIAGPLLRCRAIVAAGGLVSVAMCSLFLID*
Ga0055539_1000736	Ga0055539_10007367	F040711	MERGYSLGFVGVHGQVRLVQFRLSKKGFALNAAADDSDFAAMLDEFTGVVTRLLIERWGGIALRAAFDAEGELVERLYETGTLERCDEVDPVSPAKKLVKDGEQVDAGELLVRASARLVENWGLFNRVPLLTDEHTARDARILKCIGGEAARVHDGQW*
Ga0055539_1001120	Ga0055539_10011203	F028856	MDNFPAGQARGARFEPGAMLNIDDPFELLHADDNLGDEAAFPSTWQDLDAGDAPHE*
Ga0055539_1001306	Ga0055539_10013063	F076251	MTMLVPETVPRSPFWRVLQLIAGVALFLYSLRLLSPMPGDRAGFILLVAILAAGSMALTDSIVGLAIAALDKMQKKGNE*
Ga0055539_1001548	Ga0055539_10015483	F036776	MNAIVRLLAVYTGLSLLLCAFTRLEWSPLQPNGFGQWVALFLLIFPAAAAAEFIGERLFGKGAPPKPEESMTHSDCSWARIITGVGVLLVTFGVVLGVAWWLSHPAASI*
Ga0055539_1001703	Ga0055539_10017034	F049749	MIFGRKRASVRLVRAWCSPFGEDGPAGELLALVDEVLASTSLQPLEGQINFGYTQPMSSLRRALAKMKPVTLDALSIQDEAGEVICSFGAESASVGDRVRAFEIFALLPPASEVAQDRLLRLLMRHHMHYGYARSLGGTLDPVTEMPLRRGFFDQTIEVAGGRADWLVPEMDVRAGAVRGLYPLNVFSAVGLARLAGSGLRLPSSAPTLGNQLWRPSIIEQSELLRVNPTYRGFLHFGDD
Ga0055539_1001835	Ga0055539_10018354	F047761	MDVLTRLAAFIIAVLLAIDAFSAERTELLRVDGHARVSRWHRGDDFKLSFAGGRVESCSVGASAFDVLRDGDEVTVDSSRVFKSCDGIRRGGAVIKQANLHKWFMLIPMAILLAAALGWIRFERGYSDERRWFFG*
Ga0055539_1002404	Ga0055539_10024044	F023377	MTRHPVRPPRATRAALVTALLLAAAGAQAMTVSYQCTGRRLLTAELTPRKGQLHFEGKDWTVQRVPDKNMARYIDKKDEIEVVTKDRTLTFTHGTETLQCFLYSDALPGDAPRTTN*
Ga0055539_1002559	Ga0055539_10025593	F062395	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLSGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
Ga0055539_1003062	Ga0055539_10030623	F051255	MYAAAAIAPVTQQAANDWARSQAARTMVRAAMNSNAVIYRRTWPTLEAIETLGEAEYDPTLKFDGFMDSTLDLRDGLSVVEVFAPICDCDALQEFALLRGHR*
Ga0055539_1003233	Ga0055539_10032332	F028856	MDNFSAGQARDANFEHGPMLAMADPFDLLHADDNLGDEAAFPSTWQVLASGDVPND*
Ga0055539_1005104	Ga0055539_10051041	F050419	MTNASRPTFLRHFGRPPAPDLADMGTAFALDEALENGSYDSLPPGQPPPLRAAVPVAPWRLWLGRKLGG*
Ga0055539_1005104	Ga0055539_10051042	F070201	MRTMPLQFLTWGTITAAVGSAAWLSSIDQAAIFCSVGYRATSQAIGLDTPVEPTRAGPSAKNAGSHVAKQVAATAG*
Ga0055539_1006371	Ga0055539_10063712	F040670	MNPLVNRNTATADIGRPPPADAPMQVLPWAEDSSRSIGAEDANTRYQGELFLPGWLKIELQPTAEQGPGA*
Ga0055539_1009109	Ga0055539_10091092	F036775	MVVQPDQIDMLSAPTEVPDQPGQQPRRGLSDAVFYAGCFALALLPASLAGIVLNDLIGEPILFLAAVVVTTWVVTTVALVRIAGPMLRCRAIVAAGGLVSVAMCSLFLIE*
Ga0055539_1010433	Ga0055539_10104333	F023377	FTTVAAPAMSVSYQCTGRRVLDAELSPRQGQLHFEGHDWTVTRVPGGREARYVNKKAGIEVVTKERQMTFTHDGETLQCFLFSSALPGDAPQKSAN*
Ga0055539_1011077	Ga0055539_10110772	F012876	MTKTTAQFAALALSALMTLGTVAGVGSIANAQYAKADSLAMAPYGQAHVAVQHVTVVGRRANA*
Ga0055539_1011077	Ga0055539_10110773	F012876	AAALALSALMTLGVVAGVGSIANAQYAKADALAMAPYGQTHVAVQHVTVIGRRANA*
Ga0055539_1012447	Ga0055539_10124472	F040130	MRVAGLVKRSVAVLVGVMLGMLLVAGSGPWRELLKKADPPPEPAPIQRERAPDLRV*
Ga0055539_1012778	Ga0055539_10127781	F023378	MKFDAALWPVPPNIEIHFYFQCMREPQFYKTRTILDKLMLDVGMFPDRVALPGEMIPSHFVWAHATEQPPSGVFRRQTGNLALDLSGTDKSHPVALSHIVKTMAGDRRGTTAIHWIVREEEGPADLSGLDCLYPTRLRNGLYDSEESGHVPLPDDVLEQLHKRVVPTEPVPLSGVGFGPMSEWPGVKRRASTR*
Ga0055539_1013827	Ga0055539_10138271	F080539	QELSKIGIFLEGFDIRITGVYTKPRPFGFDFDCKRPRDLLVLARSKAVLNEDKDDTLEGAVSAEQTHGTGFRQIGTGQRLHLEIAMDRKCNVHIDSHGYVVGPGQYDWNRALEHGYWDLLSDKAPGLFGAFGKQGQVGPMIRPMQGVDGRMRWVIGLTGHW*
Ga0055539_1014609	Ga0055539_10146092	F027546	MKVAGESDPAPWQPLGERVARPQPQQPEWQPLAHAPCIEINRQGQLRTNLP
Ga0055539_1014771	Ga0055539_10147712	F044538	RLIARFVVLMVAVFGVSLAFAWAWDKSDKPHDATAQRAAP*
Ga0055539_1014958	Ga0055539_10149582	F035339	LAAAPLTLAQLRRDRLAIWLWLPIGGFALFAIIAGWRHVAGEPPQRLYMVLDIVWIAVTFSLIARRTTRRCPRCNHRWLRSFPWMSMKKIECGVCGHEMPEH*
Ga0055539_1015553	Ga0055539_10155531	F044564	MSTVPDTTPRALRIDGPLSARAVLDHFNEKGRAALGADQAAAAARIAQLLAHEADLSAAWGGLPGTDHPRHWQDAVGDEAALSDRRSEHRRLDVHLPLWWALPLAVRDRQPHRVVLPLALTREALVALIRRHLPGAWLASTVHVTLDVETRVYWGARG
Ga0055539_1017658	Ga0055539_10176582	F045820	MNAKNSPDRTQDDLPDGRNGDVVGENDDSVMESIGKAVIAPIVGADEGAEPVDPTRDRAFADLTKPLPQGQQETPRSADALDPRGKAR*
Ga0055539_1018006	Ga0055539_10180062	F062899	MNSLAANRTAVRPPACMRGLDRHCSFVEDLNWPAARPSPDKKAPRRTEVWVPGPSGQWEGVTPTLQ*
Ga0055539_1018782	Ga0055539_10187822	F055847	MNQRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVADDLGYCLEIGRRCAESAIQSMDPAREKATRGVLH*
Ga0055539_1019965	Ga0055539_10199653	F008001	VSEPSIDEIIERLQFCIVDARALQLKMLERILSISLLEAHELKEKSGYERHTRPH*
Ga0055539_1026287	Ga0055539_10262872	F049682	MDQREFEAVVDEFGANVKDLVELVEQARYEQPTAIAISRLLDAREDLLALSGKLPALRAISPPIELPIKLAGLRKHIAEAREGLKSSADSAAILHLVIDVGETFAAAVAPLQAQGRWPKGRAR*
Ga0055539_1027985	Ga0055539_10279851	F024826	MADATPYFGIAPFVLGMSRELVRAAAGQPDTVETSQDDEGGDVETWFYQGGDVELEFEAVADAKLESITAWSSDITINGVALIGADLGDLPGLARAADIHDLELTDDFADSGQCWQSEQHGLML
Ga0055539_1030034	Ga0055539_10300342	F036776	ALLLCGFTHMEWSPLQPNGFGQWLALLLLIFPAAAAAEFLGERAFGRNTPALEFEESKSHHDCSWGRIATGVFVFVATVAVVLCAAWWLSHPAAA*
Ga0055539_1032351	Ga0055539_10323512	F012876	MTQTTARFAALALSALMSFGVIAGVSGIANAQYAAADRLAMAPYGQTHVAVQHVTVIGHRANV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003752: Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences