NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003712

3300003712: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_RNA (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300003712 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0088395 | Ga0008276
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_RNA (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6690705
Sequencing Scaffolds9
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000055Metagenome / Metatranscriptome3096Y
F000088Metagenome / Metatranscriptome2436Y
F000155Metagenome / Metatranscriptome1877Y
F000237Metagenome / Metatranscriptome1498Y
F001488Metagenome / Metatranscriptome686Y
F011850Metagenome / Metatranscriptome286Y
F020015Metagenome / Metatranscriptome226N
F039672Metagenome / Metatranscriptome163N
F059360Metagenome / Metatranscriptome134Y
F074947Metagenome / Metatranscriptome119N
F076148Metagenome / Metatranscriptome118Y
F080094Metagenome / Metatranscriptome115Y
F084312Metagenome / Metatranscriptome112N
F084315Metagenome / Metatranscriptome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0008276_100588All Organisms → cellular organisms → Eukaryota → Cryptophyceae968Open in IMG/M
Ga0008276_101784All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum1612Open in IMG/M
Ga0008276_103164All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria780Open in IMG/M
Ga0008276_103350All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum741Open in IMG/M
Ga0008276_103427All Organisms → cellular organisms → Eukaryota → Cryptophyceae815Open in IMG/M
Ga0008276_105140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria982Open in IMG/M
Ga0008276_105597Not Available590Open in IMG/M
Ga0008276_106493All Organisms → cellular organisms → Eukaryota → Cryptophyceae919Open in IMG/M
Ga0008276_108795All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum549Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0008276_100001Ga0008276_1000011F000155MKFFALIAAASASQYDNMNEDELLVSLQSTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0008276_100588Ga0008276_1005881F011850SMFKTSAVILAGLMGAEAFAPSGVAPTSSRLALRASTARKSGLVGPKMMDASSIADGVQLIAANGVANVPFVDEVTGEGLGFTSPLSHFESVIGLWVLFSLPVWSAAYKKVGGDTPDWFGVSQVTEDAPGIGAFPRYAPAYDGPSFSEGLTYVLSFLWKPPILIAWKPRADLDRAAMDPARETVVSSIYKGFGGALDKTAVYDEEDQLLILSDIETFPETELGRRREKIAEASGLYSGNPSFGKSLIEYSEETKKGKKDFGTVTISAAELAALRAEAAKKK*
Ga0008276_101784Ga0008276_1017841F059360MIMTLFKEVLVPANLVPAAAVIREGQALFIITGRTASVDCITSYMLKFKA*
Ga0008276_103164Ga0008276_1031643F080094MKKQIQRDKRIRKLFNKRELNRIILKSIVKNENLSLLIK*
Ga0008276_103350Ga0008276_1033501F039672MAPDLTSKRVGQRLPECSAEVVLSTLLFEEIELLEGLQSVDSKDKSVVSSHTKTGHEVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEIALDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGISSHIWESSNVLNRVWVVVVSLDSSSSGDKSAISQ
Ga0008276_103427Ga0008276_1034271F020015FNRFIRHAWVYDGRSADPDMTNFVEHVARKHHYKLQIHHLTSFKDNVFRAALFSENIHAIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMDRLAQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYVAFDYDTPYGIDHWDQILHAAMMM*
Ga0008276_104058Ga0008276_1040581F000055KYTTIFAIAALLAVSVDTTSAVSLDRKKKKEDPLPTAADTPASGYYGADEDDVMNNIFNHYAVEVTNAAGQKTGQKVLYKDACQKACAEVLLVTKQVSEAKMEQYMAEFFPRTWAKFDINNSGEVDITESHTFMRSLLGRLNQFVLAPGSLTDIKVE*
Ga0008276_104841Ga0008276_1048411F076148TIALAALLGLASFQDVQAITLFNTAGQAIYMEDSESSSSSSSEAANVQLEGDDEEVDHSGEFFHAGQHEMLGGGGYDRVTPANFAADSDDIFMRSMIEQYALEQKTKEGNPSGKFWMNEATTRAAAREVLETHKGLKGAALDKYLNTYFAKAWGHFDVNRSGLVEVIKMPQFMRFLASDQYMSLQP*
Ga0008276_105140Ga0008276_1051403F001488MARLELTLNFPKSFQIKTFNVKSEKKLSSLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEVYINKVPSHNKFMNGKSQNLEA
Ga0008276_105597Ga0008276_1055971F084312GSSCCACFPIKCGVITIGIFTILLTIYLITMNYFLILNDYVHWYFPVVLLVLYIPMIIGSSFFVVFFSKDTQSSRGKLFVSCQFGIISTALACVWILCYYVWIYKSDTVYSGMGDPKDNVYTKQSKKFYLFVVLAETAIICTAYAYFICVTNRYADNMKGKNE*
Ga0008276_105833Ga0008276_1058331F000237F*SVFNNIYKTYYIIFTNKHLNIDQLTRLMILHYFTP*YYLYLVKLHILFCHESWDTDSGEATYEDKSGSYVS*FYDAFLKEIQDASY*TLYVFVYFFLHHFNGATVNYFFFER*NISELDEVRFYGVAPH*YFRPLMGILVICPTHYEGLMFMGL*FFLLAALPIIYNCYNVFHKYVSTIPMQNSLLQTSFFIFFMMSLYCTASMLPCGRYYYDPEGGYVGNP*VKMSYQFCYLYLG*MIHHLDLFDHYIFQFSQTLMRKSSSYSYRTLFARTSSANDEAPTEVFEK*
Ga0008276_106493Ga0008276_1064931F084315GEAPGRRMRQPMMLAVAAVGAVCVVAAIALMGRVEGDATRASELLTQDLVLFKMEPPPEPWSPPENLWLYWGEAPNKRFGHSGDNVRHLIKLGRIAGGEFRDPHFLMDFEGQTFRDLSEACCSAIIMAPMKNNFPIYNAQSNIAQRMRNFVANGNHLVLTGGSLVSIEFLNRYFYYNIQPESTQGTFKGSGYGNYSPGPFRKLINDQLPKVFKLTPDTLYQDYTTVSSMALRSLPSGTTVLYMTPHSSPVFQIKFCQRLSEKHGEPPIKTVPRDCARHAKRGFPCSCGTITYIGYDWHYDQTAEAW
Ga0008276_106496Ga0008276_1064961F074947TQMLEQTAKGFPSVWQQIGVQDPHSAANSLFKQNDNFGYKARPQMLAEKSQNVNVWKQIGAQEPKAAAQQLMKQNDNFGY*
Ga0008276_108795Ga0008276_1087951F000088STGAEVTFAPPAKGPYASDTDHLSNECYGADEDDIMYDVFERYRVEEKNPLGAGTGVWKLPKGSGPQWAADVVRRFHVMDDDKVNDYVAANFDNFWKKYDNNGTGEIYESEGETFMRALLGPNNRFRLAPGALSDLDSTAQIHQNQFSKTPDIKTFTVSPTAYGVAAAPAAGATTE*
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