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Sample 3300003669
3300003669: Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Early Sample 3)
Overview
Basic Information
IMG/M Taxon OID 3300003669 Open in IMG/M GOLD Reference Gs0111460 | Gp0101224 | Ga0070396 Sample Name Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Early Sample 3) Sequencing Status Permanent Draft Sequencing Center Published? N Use Policy Open
Dataset Contents
Total Genome Size 169839258 Sequencing Scaffolds 5 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Croceicoccus → unclassified Croceicoccus → Croceicoccus sp. Ery15 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales 1 Not Available 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 1 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia
Alternative Ecosystem Assignments
Environment Ontology (ENVO) aquatic biome → coal mine → underground water Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Subsurface (non-saline)
Location Information
Location Lithgow Coordinates Lat. (o ) -33.460524 Long. (o ) 150.168149 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F003217 Metagenome / Metatranscriptome 500 Y F009639 Metagenome / Metatranscriptome 315 Y F027486 Metagenome 194 Y F047236 Metagenome / Metatranscriptome 150 Y F091027 Metagenome 108 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link LSCM4E_1005313 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Croceicoccus → unclassified Croceicoccus → Croceicoccus sp. Ery15 3109 Open in IMG/M LSCM4E_1016934 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales 1292 Open in IMG/M LSCM4E_1019157 Not Available 1189 Open in IMG/M LSCM4E_1056294 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 637 Open in IMG/M LSCM4E_1081892 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha 518 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
LSCM4E_1005313 LSCM4E_10053139 F027486 MKAKRRTDDRIARSFRQDFPEFVARAEALGVRISLGEGRRNGRERVFWLDGYRQLTGYTTRSDGLPFTRLDAEKNIDKALTAIEEDRSEVASMTSDERFARIMGEFRKMKPQYRMIGEVRMPNGDRGHCFFMADYDGGVHLDGIGDVAKASAGWRQGETAADHLARFCSALESDFSARATTPATGEGSE* LSCM4E_1016934 LSCM4E_10169342 F003217 MSDAGFVVQKVEWFQFRSPDGKAFFVMVSSLPNGFFTAVPCDLTMVRADHSLMALAATPGSTELIAPALDGAR LSCM4E_1019157 LSCM4E_10191572 F009639 MRAWTVDADDIRVAEDFDAALLHRTPEIEEFLSHGGEKFVVIGTKGFGKTLLLKAKRVLTQRGG LSCM4E_1056294 LSCM4E_10562942 F091027 RDLDDLVIERHDGVEWVRFGSHLHRPLPSVPVLSRGTSDVVTIGAEGHAEWRVVETDESPVEIAITTSGAWQLYDETFTSVANGRGSAVAALPGGGRVGYVTLFGDAGHTVTVAAR* LSCM4E_1081892 LSCM4E_10818922 F047236 MPVEGRGLSSRPTQHASKDLEIGQPINSDKSSETTDGVTRKSEG
