Sample 3300003587

3300003587: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA

Overview

Basic Information
IMG/M Taxon OID	3300003587 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0091329 \| Ga0008670
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	192377443
Sequencing Scaffolds	35
Novel Protein Genes	37
Associated Families	33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	17

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004164	Metagenome / Metatranscriptome	450	Y
F011256	Metagenome / Metatranscriptome	293	N
F011736	Metagenome / Metatranscriptome	287	N
F015654	Metagenome / Metatranscriptome	253	N
F025596	Metagenome / Metatranscriptome	201	N
F027018	Metagenome	196	N
F031925	Metagenome	181	N
F039110	Metagenome / Metatranscriptome	164	Y
F042010	Metagenome / Metatranscriptome	159	N
F042146	Metagenome / Metatranscriptome	158	Y
F044162	Metagenome / Metatranscriptome	155	N
F045800	Metagenome / Metatranscriptome	152	Y
F046387	Metagenome / Metatranscriptome	151	N
F046847	Metagenome / Metatranscriptome	150	N
F050686	Metagenome	145	Y
F052646	Metagenome / Metatranscriptome	142	Y
F054096	Metagenome / Metatranscriptome	140	Y
F056893	Metagenome	137	Y
F058538	Metagenome / Metatranscriptome	135	N
F058917	Metagenome / Metatranscriptome	134	Y
F059063	Metagenome	134	N
F074447	Metagenome / Metatranscriptome	119	N
F077377	Metagenome / Metatranscriptome	117	N
F077771	Metagenome / Metatranscriptome	117	N
F078539	Metagenome	116	Y
F080906	Metagenome	114	N
F086145	Metagenome / Metatranscriptome	111	N
F088929	Metagenome / Metatranscriptome	109	Y
F092698	Metagenome / Metatranscriptome	107	N
F096496	Metagenome	104	N
F097392	Metagenome / Metatranscriptome	104	N
F102550	Metagenome	101	Y
F105334	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI26256J51712_1000047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	64548	Open in IMG/M
JGI26256J51712_1000284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	23676	Open in IMG/M
JGI26256J51712_1000425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	18428	Open in IMG/M
JGI26256J51712_1000761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	13291	Open in IMG/M
JGI26256J51712_1001608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	8357	Open in IMG/M
JGI26256J51712_1004421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	4142	Open in IMG/M
JGI26256J51712_1004680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter	3984	Open in IMG/M
JGI26256J51712_1005143	All Organisms → cellular organisms → Bacteria → Proteobacteria	3731	Open in IMG/M
JGI26256J51712_1005219	All Organisms → Viruses → Predicted Viral	3691	Open in IMG/M
JGI26256J51712_1007884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2764	Open in IMG/M
JGI26256J51712_1007951	All Organisms → cellular organisms → Archaea	2744	Open in IMG/M
JGI26256J51712_1009770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2363	Open in IMG/M
JGI26256J51712_1010154	All Organisms → cellular organisms → Bacteria	2302	Open in IMG/M
JGI26256J51712_1011791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2058	Open in IMG/M
JGI26256J51712_1012997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1906	Open in IMG/M
JGI26256J51712_1024359	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
JGI26256J51712_1028012	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
JGI26256J51712_1028031	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
JGI26256J51712_1030895	Not Available	952	Open in IMG/M
JGI26256J51712_1036674	Not Available	835	Open in IMG/M
JGI26256J51712_1037231	Not Available	825	Open in IMG/M
JGI26256J51712_1038328	Not Available	807	Open in IMG/M
JGI26256J51712_1041185	Not Available	765	Open in IMG/M
JGI26256J51712_1049112	Not Available	677	Open in IMG/M
JGI26256J51712_1052115	Not Available	649	Open in IMG/M
JGI26256J51712_1053275	Not Available	639	Open in IMG/M
JGI26256J51712_1057759	Not Available	605	Open in IMG/M
JGI26256J51712_1059783	Not Available	592	Open in IMG/M
JGI26256J51712_1060113	Not Available	590	Open in IMG/M
JGI26256J51712_1062813	Not Available	573	Open in IMG/M
JGI26256J51712_1065440	Not Available	558	Open in IMG/M
JGI26256J51712_1066975	Not Available	550	Open in IMG/M
JGI26256J51712_1071966	Not Available	526	Open in IMG/M
JGI26256J51712_1072738	Not Available	523	Open in IMG/M
JGI26256J51712_1076215	Not Available	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26256J51712_1000047	JGI26256J51712_100004712	F044162	MLKKLILLIIIGAIGWYAYNHYMKSEIDNAKDTTEEVVSNVEDAIEDM*
JGI26256J51712_1000284	JGI26256J51712_100028429	F011256	MSLTNIFGAVVLLAVGLVILLHPDKFRYSSKQIKQFIFRYWWISVFVLLGYVTMGEW
JGI26256J51712_1000425	JGI26256J51712_10004258	F004164	MAYLHTLRLIFFLLLPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDIXEGNQIKGYSVFARHIQXKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
JGI26256J51712_1000761	JGI26256J51712_100076112	F042010	RVKGVVRAHGSIGNNERWKTPLGARLSRDDIVEKLKAILGSSSGLVA*
JGI26256J51712_1001608	JGI26256J51712_10016085	F077377	MKTLENFACFDQFKKTIQGMRATRKEFEDGQQXEXLTNQRDGRVYKKLKWTALHTSKCIQEAVFLLKEEEPSLSKEQLKKMLQAESVSIWFPYGVRKVEKALSVNGSAFHQRGWDRLGRGEPRFSGDSSTWPANHMAAVSLNSNCFKKE*
JGI26256J51712_1003556	JGI26256J51712_10035563	F097392	MPDIMLLGVEKQVLSLEIDENPADNFPCMPSEGIDSEMRVLLYALLMGIFFDEAQSMEQLVLEYGPEGPWVFKLDFTITERLAEVEEDDIDGIALNWSQTGEMSALNMEASDLQEVLARFLFNLVHXCMLVRQEEVLSVFIYSE*
JGI26256J51712_1004421	JGI26256J51712_10044215	F080906	MLQKNINIESSAREKRIIKRLNLKNLPFETSLEEFCSKYIEMISDLKESFILGSDKPGMQWCLSTIKKFKVFLLIFEANELGIEVYKESISSKLPEYSYKTIAQIIDEGLEKGFFIKMSARIXKK
JGI26256J51712_1004680	JGI26256J51712_10046802	F058538	VYSQYETTVMNRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDILKTIAIQKHLKSNPHTAN*
JGI26256J51712_1005143	JGI26256J51712_10051436	F011736	MENKNIFLMIFFYCTINLSYAKDLDMNSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26256J51712_1005219	JGI26256J51712_10052193	F058917	MDKLLKALEKESKDIRSADMVVNGKIHQIYYRIMSGDDHARALELSKKTKNIKETDGSTTELTYYDDDLLRCHIIYFQLLDKDGSRVFTDLPKIQWIKDNITXETASYLAAVMGLKSVSDIVEEQQEALKKMNG*
JGI26256J51712_1007813	JGI26256J51712_10078135	F074447	QIIDEGLEKGFFIKMSARIQKKHDLKIRNIRPSEDLTVEFINSNIEIISSLMKFLRKHK*
JGI26256J51712_1007884	JGI26256J51712_10078843	F046387	SFVLLISACQSTQKTTGEGLVSVVAQNVLKLAGDQAIKGANFNTVRGLPVKIELKGFVEQKTKGFIENLVSAKAEKSGALLIRNGEPDIIIEAVVNSAGNDRGSSSIPIINRALRTESVVDLTIILRDANTGERLSTQDIRGESKYEQKRWIGIIDESGKYYVKSSLIAQEGIGEKIMSDIGNDGWILTSP*
JGI26256J51712_1007951	JGI26256J51712_10079513	F096496	VNKKLVPRNIERNAILTKQQKIHLKSEKVDPKILNNIRRTLEKKLDGLTEDLDIIKNSKSLENWRLLQSEKFQELHKVLESTVMNFKPFYPFAVKTFSKKVGTKKFRMFWMDISEESNFSTERIFEPSFALRKIKHYFNDDSFELLCWAVENNLIPCYKNNAKREEDFELAKNDELYFLKLQNTRTFTNEKKVQLKPEIEKERLENNMMWNYINKQYDMLNKKLYKKYGVKVIPKIETFDVFTLS*
JGI26256J51712_1009770	JGI26256J51712_10097705	F102550	MVETMAAHLSLRQQKIMLANRPSPGQPITTNNKKLGSVTTNRHSAP
JGI26256J51712_1010154	JGI26256J51712_10101542	F086145	MRRIAXKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV*
JGI26256J51712_1011791	JGI26256J51712_10117913	F088929	VGPPVPIVKNSADFATPVKDKDATNISKALDRDVIIFFIISPSISLFL*
JGI26256J51712_1012997	JGI26256J51712_10129971	F092698	CCGFRKNIKFAVSLETKRSTLVSEASPTSAITAVRNKYV*
JGI26256J51712_1024359	JGI26256J51712_10243592	F077771	MYYTYYFQGMVFEEEEIEKDPKKAFLSYSKKFKNIDYLNDFHKEYVDESLSELNERLHFEIIDGEAEAYDDETGEEIYKSIFRMELKDEGYGKKNYVSYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMINSDGVLKESMLTTNSAYDKEIKPGKNVEFLYPDVKGEIK*
JGI26256J51712_1028012	JGI26256J51712_10280122	F042146	KVLVLKENQVLETNHQEMERKKVLVLKENQVLQKKIIQNHLALQIIQNILEENLQKTHLQTQRKKALVLRERKNLRVEIVDLKTLALKNIVKKELNLKIF*
JGI26256J51712_1028031	JGI26256J51712_10280312	F015654	MKRFFKEVYLTGHGKEDXNIFNRFKDTKFYKVNAVEQKELKDCGNVKYINLDEIKI*
JGI26256J51712_1030895	JGI26256J51712_10308951	F045800	RTPVEDCLEVKEYLDAMIDYYRYTSSPVLAERRKTYKDIKIALFGEXXDDGDTGTKSTRAWFC*
JGI26256J51712_1036674	JGI26256J51712_10366742	F054096	MTVTIGDKLKLHPKTGKGKQVVHRDGSLFVVLXLSDTVLFSEGKDWIDLQSIDNPKNGRWIQRFHDKNFDWEIVR*
JGI26256J51712_1037231	JGI26256J51712_10372312	F058917	MNKLLKALEKEGTDIRSADMVVGGKLHHVYYRVMSGQDHDNALELSKKVKTVKEADGSTTDLTYYDDGLLRAHIIYFQLLTKEGERVFNDLVKVQWIKDTITYESSSYLSALMGLKSVSDIIEEQQEALKKMNG*
JGI26256J51712_1038328	JGI26256J51712_10383281	F050686	MEKATVLDRPDQIEAYRMAVFKQGIKALLIGMKINSGYTSTVCRNYVSGLTGKRYPAGKKGLTTALDDLQDSID
JGI26256J51712_1041185	JGI26256J51712_10411852	F039110	AVSKKADAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV
JGI26256J51712_1049112	JGI26256J51712_10491121	F078539	MTAIRPFTDRENFIVASTIMVVSEKMKSISRETRQSILQFIREERYPAVTDQDWKEIANGIDSHKKNIFGLMVKAFNESSEAPETFAGKSMANLDSSVKDDIESINFDELKEIVDESEDPKLREYYLTMKQLLRDYKDEKENN*
JGI26256J51712_1052115	JGI26256J51712_10521152	F031925	MTNQKTDGTTLQFVAAFLKSQKGKYEDTHKHLDKILGSPDHQNEELVWFFKACMFQKMGKIAQSNDCLKIALMSFDYPPNITPPT
JGI26256J51712_1053275	JGI26256J51712_10532752	F052646	MKHLLLIGLCLLFILGNKPVTETPQETTVPLSEILLYCNTPEFVRNMAENDYMLGLAASGVINDDRHRMLLSMELLINPRNKQWAIIFNYAKGNLSCIIGGNHIKLFNPKN*
JGI26256J51712_1057759	JGI26256J51712_10577592	F025596	TLVNLSYLFGIAILILGLVDRKMRLMDVSDAQWVILSSVLGIFFPILLNALFFKKFSIHFWNKFN*
JGI26256J51712_1059783	JGI26256J51712_10597831	F077771	IEKDPKKAFLSYSKKFKNIDYLNDFHKKYVDESLSEFDERLHFEIIDGEAESYDDETGEEIYKSIFRMELKDVGPGAKKNYVYYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMITWDGILRESTLTKNSAYDSEIKPGKNVEFLYPDVKGEIK*
JGI26256J51712_1060113	JGI26256J51712_10601131	F105334	MTKVAFHRAGIPFFDRDTFLTPFDKIFDQMIGSQFPDITKSVGV
JGI26256J51712_1062813	JGI26256J51712_10628131	F046847	MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQLK
JGI26256J51712_1065440	JGI26256J51712_10654401	F027018	FIFFSPNQTLQLFNNFLPSSYDLQYSEVMNKGSFLNPILEFSNISIQINDVQVYSANKSHYGFLVSPALIIGKVTMSHIHLEEANILLADYSGQKMPKLKINLDKNISISFHETSLAHLGSEMLINGQLDSLIPGLANGHINISHHGKISNLSIDSDGEDSNFLVNLNTLDWLKFFPNDYLSSSK
JGI26256J51712_1066975	JGI26256J51712_10669751	F056893	CMNKRTKEIKVHKTLTMSVSFWALVEQVRSKQHMDTADEAIMASVLSLARKIGIEA*
JGI26256J51712_1071966	JGI26256J51712_10719661	F059063	DYIMYKMNLKNLYGTFLQNGNSPEAFIANVIYERYGAKRKKMLQGLYNIINGGPRHYWGKCNVTFAPFQMETILATAEDDNMWSQGRTKEIDIHNLEFYA*
JGI26256J51712_1072738	JGI26256J51712_10727381	F042010	GKGENVVRAHGSIGNNERWKTPLGARLSRDDIVEKLKAVFG*
JGI26256J51712_1076215	JGI26256J51712_10762152	F102550	LVHLRQRAPPDAKRSLCRYLMVETTAAHFSLRQQKSTLANRSSPGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003587: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences