NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003471

3300003471: Fe-reducing enrichment culture from wetland. Sample 5 with periodic nitrate additions.



Overview

Basic Information
IMG/M Taxon OID3300003471 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111407 | Gp0099081 | Ga0059303
Sample NameFe-reducing enrichment culture from wetland. Sample 5 with periodic nitrate additions.
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size370091479
Sequencing Scaffolds36
Novel Protein Genes39
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes7
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Thermoflexibacteraceae → Thermoflexibacter → Thermoflexibacter ruber1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
Not Available3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_311
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → bayou → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationDorn Creek (Dane County, WI)
CoordinatesLat. (o)43.135131Long. (o)-89.441777Alt. (m)N/ADepth (m)0 to .3048
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002525Metagenome / Metatranscriptome552Y
F003908Metagenome / Metatranscriptome462Y
F006471Metagenome372Y
F017253Metagenome242Y
F020377Metagenome224Y
F021332Metagenome219Y
F025315Metagenome202Y
F026170Metagenome199Y
F031913Metagenome181Y
F032705Metagenome179Y
F034975Metagenome173Y
F042417Metagenome / Metatranscriptome158Y
F054142Metagenome140Y
F054639Metagenome139Y
F055832Metagenome138Y
F057476Metagenome / Metatranscriptome136Y
F061953Metagenome / Metatranscriptome131Y
F063150Metagenome130Y
F065951Metagenome127Y
F069434Metagenome / Metatranscriptome124Y
F072489Metagenome121Y
F076227Metagenome118Y
F096119Metagenome / Metatranscriptome105N
F096266Metagenome105Y
F101444Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
FeGluNO3_10001065All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes41760Open in IMG/M
FeGluNO3_10002167All Organisms → cellular organisms → Bacteria8248Open in IMG/M
FeGluNO3_10006664All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae8458Open in IMG/M
FeGluNO3_10012791All Organisms → cellular organisms → Bacteria32893Open in IMG/M
FeGluNO3_10013950All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia3136Open in IMG/M
FeGluNO3_10015639All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes7229Open in IMG/M
FeGluNO3_10023000All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales15900Open in IMG/M
FeGluNO3_10023001All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes3800Open in IMG/M
FeGluNO3_10027020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1073Open in IMG/M
FeGluNO3_10028328All Organisms → cellular organisms → Bacteria3100Open in IMG/M
FeGluNO3_10030149All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3163Open in IMG/M
FeGluNO3_10030466All Organisms → cellular organisms → Bacteria1116Open in IMG/M
FeGluNO3_10038220All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Thermoflexibacteraceae → Thermoflexibacter → Thermoflexibacter ruber959Open in IMG/M
FeGluNO3_10049217All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter2741Open in IMG/M
FeGluNO3_10058658All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3891Open in IMG/M
FeGluNO3_10064914Not Available513Open in IMG/M
FeGluNO3_10068260All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia6081Open in IMG/M
FeGluNO3_10075525All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1381Open in IMG/M
FeGluNO3_10080872All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes5265Open in IMG/M
FeGluNO3_10093602All Organisms → cellular organisms → Bacteria1405Open in IMG/M
FeGluNO3_10100517All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2887Open in IMG/M
FeGluNO3_10111703All Organisms → cellular organisms → Bacteria3072Open in IMG/M
FeGluNO3_10120852All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum700Open in IMG/M
FeGluNO3_10141699All Organisms → cellular organisms → Bacteria669Open in IMG/M
FeGluNO3_10169129Not Available951Open in IMG/M
FeGluNO3_10174975All Organisms → cellular organisms → Bacteria1520Open in IMG/M
FeGluNO3_10182862All Organisms → cellular organisms → Bacteria3306Open in IMG/M
FeGluNO3_10270637All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31766Open in IMG/M
FeGluNO3_10277609All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria873Open in IMG/M
FeGluNO3_10306058All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria706Open in IMG/M
FeGluNO3_10314699All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1390Open in IMG/M
FeGluNO3_10336004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1011Open in IMG/M
FeGluNO3_10346214All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes862Open in IMG/M
FeGluNO3_10377797All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium617Open in IMG/M
FeGluNO3_10450511Not Available559Open in IMG/M
FeGluNO3_10467378All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium886Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
FeGluNO3_10001065FeGluNO3_100010651F017253KSMNGQFATIMAYNVGSYTQGRTAGDFLSSRKAARAERYPPKTTAAALDG*
FeGluNO3_10002167FeGluNO3_1000216710F017253TVKQLFNTTSCRNNVGSYTQGRIAGDFLSSRKIARAERCPPKTTAAALDG*
FeGluNO3_10006664FeGluNO3_100066642F096266MIDARLIFLLLTTLLLAILSGIAIVTLRKNRKQKLEEPKYRMLKDD*
FeGluNO3_10012791FeGluNO3_100127917F025315MQNYLLVTCEIIIVIVMPLLVLYLKGNWPLRKVIPALMIIPVLWYFTYAPLHELSHAAGTYLVGGKVIDYRLIPRFWLGEFGGAWATPGGFTQSWQQLTSSTFPYLLDIVCLFVAIFVFRRGFSRNPFYVGLAFMLLCLRPAFDFVCESIGFLTGWRGDLYYIQLIAGPFALWPLILISIGLSVYSISSTIRHVVRFSKHENGQNTNETKHNIVQTRRKNEYDQSKSH*
FeGluNO3_10013950FeGluNO3_100139505F055832MGRLIRIVVIAAVAWAAWHAGMAAWQQFQFSDEVAKIAQFGPDKDAASVRDAVLTAAARYDLPVTEKDVRIRQEERPASLYIDVTYTAQVEVLPRYFYPWTFTTSAHGWFVPGGRAPLK*
FeGluNO3_10015639FeGluNO3_100156391F017253MTAVAFIIAHNVGSYTQGRIAGDFLSSRKADRAKRCTPKTTAAALDG*
FeGluNO3_10023000FeGluNO3_1002300021F069434MKRIFDKTTCWEIFDHTDEPERYWALQRAGLHDAARTAAILLTLRHPLRMIPVIIACARCG*
FeGluNO3_10023001FeGluNO3_100230015F069434MKHIFDETTCWNIFDHTDGPERYWALQRAGLHDAAQVAALCLTLRHPLRMIPVIIACARCG*
FeGluNO3_10024268FeGluNO3_100242681F006471MPIESGEESISSMQLTKLRAAPVLQAEVPPCAPVGQTDGGTASQ
FeGluNO3_10027020FeGluNO3_100270202F101444MSLAEAGGLLIATLQAAGVGAVVILVLMIGASLGLDVFKLRPSGPKSLTVRSLDEALGRPESYLPPSTPRGTTDQLGNSQRAS*
FeGluNO3_10028328FeGluNO3_100283284F054639MKTARRTLIYAAVLAVPYLTIGLFSGGAYAPRVLRGGLFLLAVAGLASLWMAWRGKRIDSQQDERKDFIINQSMRFSFAVTSVALQAYWAWQFARLGNAGDSSFWLLVALWGSFLGAHAYNSLRH*
FeGluNO3_10030149FeGluNO3_100301492F017253MAANVGSYTQGRIAGDFLSSRKEARAERCPPKTTAAALDG*
FeGluNO3_10030149FeGluNO3_100301494F017253MLVVSLSLCPKMAYNVGSYTQGRIAGDFLSSRKAARAERCTPQTTAAALDG*
FeGluNO3_10030466FeGluNO3_100304665F017253KSMNGQFATIMAYNVGSYTQVRTAGDFLSSRKAARAERCPPKTTAAALDG*
FeGluNO3_10038220FeGluNO3_100382201F017253QAATTIGYNVGSYTQGRIAGNFLSSRKAARAERCPPKTTAAELAG*
FeGluNO3_10049217FeGluNO3_100492172F063150MRLFLAISMIVFITRLAGATSYPLPVPSPVLEEFISVEAVKFRDIQGTNKPPFIPKSWKLISVSNGEKSNSSNLWFQDPNGSVYLLQGFTSQNKFVLHENMYRIPAR*
FeGluNO3_10058658FeGluNO3_100586583F021332MAKTPAAKTSRTSAKSRKPTLRVQVQHDIDQALAQAGIPSAIDSDGWRWMQDPSGKGLVGVVAVTGQREDLSLRVVAPIMPLPTGQAALLRALRRIAEMNYEIPGHSRLAIDSRTIWAVVTHDVGDIGPDDVPNCIFDCVWLAQAGAEWLKGPKPKKVTKKR*
FeGluNO3_10064914FeGluNO3_100649141F054142YVPHGDAGKAVLCVDDNRVPDTASIPVTLTLIDGIYRVTPVGDANLRLQLLLQMSGATTIYGPVLGQARDPITGVVITISPPIDPNYPTQGDAMLSGLLASRNFAAGGVYGSVQFSLDGAARWCSPNNWILRPR*
FeGluNO3_10068260FeGluNO3_100682604F034975MIHAPVMHPAAHPDQYFRKGTLEGDTPNEPQQCNCHGTALDENGMPCDPVAIAEDVEGAEVDETQG*
FeGluNO3_10075525FeGluNO3_100755251F017253CVSSGDRNMAYNVGSYTQGRIAGDFLSSRKAARAERCTPKTTAAELAG*
FeGluNO3_10080872FeGluNO3_100808723F017253MAGNVGSYMQGRIVSASWRMSIRKAARAERCPPKTTAAELDG*
FeGluNO3_10080872FeGluNO3_100808725F017253MLICRLKMAYNVGSYTQGRIAGDFLPSRKAARAERCPPKTTAAELAW*
FeGluNO3_10093602FeGluNO3_100936023F061953MSGPVWKLLKMPGTCDSCGESASELLSVGTVVDYAFRPEYRFCRSCYDRYGGRHDELHQKAVDEQQLPPVVSRPDSVEDVPE*
FeGluNO3_10100517FeGluNO3_101005176F017253MFSVVIELSNNIAGNVGSYTQGRIAGDFLSSRKAARAERCPPKTT
FeGluNO3_10111703FeGluNO3_101117033F032705RTVKGVDTEKRALYDRYKELTAEARKVAAETEAADVSESDKIRRNNLAFSRVLGEINEVITRMGEATTASYVRVVNQNLGSLTTTAREGDTRDQKDAIERLGGLKDAAVKVVGQISGGRAPEDERTIQAFTMIPAARAVWVYKGDVFYAWAGGIAIDLIPTIFVILLTLGRSREEEEELERQAHAAAHPVPVPRTAVRGGNWPGPAAP*
FeGluNO3_10120852FeGluNO3_101208521F031913FPAPFIPPAQEVTLTGRTQAALTKAPEWMSAEMPPGYQTRLWEMERLAADLDAMDRIGRVLWETGEPLLDAVVALFGALKCEVDATSGPTGPIVVKLDESHRLLLVASDAASPIQKTDEGLARAFRAVQFASANDRVVLLASNDPATPPADRPDPALPDALAVLQRMGVAVMPTAALFRLWRLWYEDQPKAQKHLERLHAQDGGLFVAPPR*
FeGluNO3_10141699FeGluNO3_101416992F026170EAVSSRMPPMARERSEAEQKAVETILRALAHNLQRLQEEAEMQALRGEVDSGVQKGLAMALREVNDMLPRRKRVK*
FeGluNO3_10169129FeGluNO3_101691292F020377MSLSRWWREWQFESAFRRAIRADLARIGKEYEAKFKVLATGNDFDAAMAAYLKACRLPDLRLETLRXSRRLRRRADARGVELPKEWWEHDEEHDLWFLTPEGRHQAEHRLTQERLWTVKQWLQVLTPAVALLVGLAGVVIGLLSMWRWP*
FeGluNO3_10174975FeGluNO3_101749754F076227MNMLQELAAQTGAGGWAIASMVFFAVVWLVIAGRVIRARPDDMEARARLALEGESEGEDEALTRGNHG*
FeGluNO3_10182862FeGluNO3_101828623F072489MLGXXXXXXXXDPTPQVTVVDVLVDALGLTGVIVAGSFVLGGVVGILLIAYSRWKVARSGDGGSTEHTSLDLSSPAK*
FeGluNO3_10270637FeGluNO3_102706372F017253MILIYMAHNVGSYTQGRTAGDFLSSRKAAWAERCTPKTTAAALDG*
FeGluNO3_10277609FeGluNO3_102776091F057476MSADENPTEPSEESLREIPEQDFSRAIRPNRYANLRGAFQHAVFVDREVWEHFGSAERILETLRLLVEIAKKRPA*
FeGluNO3_10306058FeGluNO3_103060581F003908MDVSMNVTTRLACAAAVLGACGSPSVKHMTQQEMIAADPLPLAKGATWTYNVVIKRFEVDAEKETTRTLTWVTEVIDAKTAGAVTAYRVKGWPSDLADLDQSPPSNETFILRSGNEFLFGASAEPTLEGAQGWFNWPVVDGQRICPNRMVYCWQVSAIDTGYALKFITGPDEQIFEIEPGTGVSR
FeGluNO3_10314699FeGluNO3_103146992F042417MSNLPQIAKTQIAKFPEVMALVVTDDAGSLLESSGDIDGEALGAVHVVTTQALTRCGNALGLGPLHRVTITGPRRACLIALHDEEVLGVYVDPTKPIGVFEKKLDTALRR*
FeGluNO3_10336004FeGluNO3_103360041F002525RVWAAVDSAWEQEKLEARKMLENAADSHTSGARFVGWRFM*
FeGluNO3_10346214FeGluNO3_103462141F017253MAGNVGSYTQGRIAGDFLSSRKDAWAERCTPKTIAAEFADS*
FeGluNO3_10377797FeGluNO3_103777972F065951MPIYDQGYRRYVARAPLHRARFWPITREALRLVLAKRAFLGLL
FeGluNO3_10450511FeGluNO3_104505112F096119MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKADRA*
FeGluNO3_10467378FeGluNO3_104673781F063150MRLTIFLAALLITGAAQATSYVPQFPKGLEQFTTIEGIKFKDASGGASNPPSIPKSWKLISVSSGEKSNSNNLWFQDADGSVYLLQGFTSQNKFIIHEHVYKIPAK*
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