| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003460 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111425 | Gp0104215 | Ga0059317 |
| Sample Name | Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S2-DC01B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 64079668 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine neritic zone → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Douglas Channel, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 53.6667 | Long. (o) | -129.1333 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005815 | Metagenome / Metatranscriptome | 389 | Y |
| F043408 | Metagenome | 156 | N |
| F065794 | Metagenome / Metatranscriptome | 127 | Y |
| F078220 | Metagenome | 116 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| DC01B_1169416 | Not Available | 548 | Open in IMG/M |
| DC01B_1213895 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 530 | Open in IMG/M |
| DC01B_1416153 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 551 | Open in IMG/M |
| DC01B_1561638 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 523 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| DC01B_1169416 | DC01B_11694161 | F043408 | RRFFANCYPSVRVISYSKYASVRIMKVRKEVSLTVETAEVANKMKNFSQWVRIGLRQYQHGEDVASETMRRMRYRKACVHLASALIDYATQIDPDYKGEVEVIIAQAMNQTTLEEFE* |
| DC01B_1213895 | DC01B_12138952 | F005815 | MTMKVTRLTTYWTVDEAATVIDFLDMLRDVLWETYGEQITRMHREACDSRIQDINQCELGFDDDTPF* |
| DC01B_1416153 | DC01B_14161531 | F065794 | MQDIKIYALNLLSLAVSFTHVEMVLKLILLAASIVYTAQRIWINYNEKKNK* |
| DC01B_1561638 | DC01B_15616381 | F078220 | LDFDSGEDYVYNLFEAVVDVVHGKKHKKLKFAKCMKCGRYSPFRPKSNGMQFTAFYCNHCGSIVSFGARGKNPQISELAEIFCKNCEDDCRKCQINKLANEQSRGKNVKLPKKAR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |