NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003327

3300003327: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-R (Metagenome Metatranscriptome, Counting Only)



Overview

Basic Information
IMG/M Taxon OID3300003327 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110114 | Gp0061323 | Ga0006574
Sample NameIonic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-R (Metagenome Metatranscriptome, Counting Only)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55670928
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003289Metagenome / Metatranscriptome495Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0006574J49614_1041637Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0006574J49614_1041637Ga0006574J49614_10416371F003289ILIHLTQ*QY*W*F*FSFLWAFYYLTILKIVRFRTLKFRPRIATTLRPHGK*GDLIICIIPVS*CANIISNSNFILRMIE*QSEASLLTVRIRGKQWY*VYKFELKTFTDVLTVPKNIGRNK*QISTPGDLQVADDYLHILQLRAQNK*VKNY*SDMVKKTSKTKNFHLI

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