Sample 3300003301

Basic Information
IMG/M Taxon OID	3300003301 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0055331 \| Ga0005239
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_10m (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_10m (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	45135099
Sequencing Scaffolds	23
Novel Protein Genes	30
Associated Families	24

Dataset Contents

Total Genome Size

45135099

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	British Columbia, Canada
Coordinates	Lat. (^o)	48.7299	Long. (^o)	-123.5699	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

British Columbia, Canada

Coordinates

Lat. (^o)

48.7299

Long. (^o)

-123.5699

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F000200	Metagenome / Metatranscriptome	1633	Y
F001145	Metagenome / Metatranscriptome	765	Y
F009426	Metagenome / Metatranscriptome	318	Y
F012347	Metagenome / Metatranscriptome	281	N
F012916	Metagenome / Metatranscriptome	276	Y
F015154	Metagenome / Metatranscriptome	257	Y
F019481	Metagenome / Metatranscriptome	229	Y
F019653	Metagenome / Metatranscriptome	228	Y
F020178	Metagenome / Metatranscriptome	225	Y
F023489	Metagenome / Metatranscriptome	210	Y
F035482	Metagenome / Metatranscriptome	172	N
F036257	Metagenome / Metatranscriptome	170	N
F046905	Metagenome / Metatranscriptome	150	Y
F047705	Metagenome / Metatranscriptome	149	Y
F055647	Metagenome / Metatranscriptome	138	Y
F068876	Metagenome / Metatranscriptome	124	Y
F069748	Metagenome / Metatranscriptome	123	Y
F082723	Metagenome / Metatranscriptome	113	N
F083942	Metagenome / Metatranscriptome	112	Y
F094941	Metagenome / Metatranscriptome	105	N
F099869	Metagenome / Metatranscriptome	103	Y
F101265	Metagenome / Metatranscriptome	102	N
F101275	Metagenome / Metatranscriptome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005239J48904_1000013	Not Available	535	Open in IMG/M
Ga0005239J48904_1004410	Not Available	1068	Open in IMG/M
Ga0005239J48904_1005582	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3532	Open in IMG/M
Ga0005239J48904_1005846	Not Available	542	Open in IMG/M
Ga0005239J48904_1005965	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5053	Open in IMG/M
Ga0005239J48904_1007522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	812	Open in IMG/M
Ga0005239J48904_1009543	Not Available	768	Open in IMG/M
Ga0005239J48904_1009562	Not Available	546	Open in IMG/M
Ga0005239J48904_1009758	Not Available	833	Open in IMG/M
Ga0005239J48904_1011539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2026	Open in IMG/M
Ga0005239J48904_1015110	All Organisms → cellular organisms → Eukaryota → Sar	2679	Open in IMG/M
Ga0005239J48904_1016914	Not Available	654	Open in IMG/M
Ga0005239J48904_1017648	Not Available	526	Open in IMG/M
Ga0005239J48904_1017653	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	675	Open in IMG/M
Ga0005239J48904_1018501	All Organisms → cellular organisms → Eukaryota → Sar	1330	Open in IMG/M
Ga0005239J48904_1019886	All Organisms → Viruses → Predicted Viral	1608	Open in IMG/M
Ga0005239J48904_1021077	All Organisms → cellular organisms → Bacteria → Proteobacteria	1532	Open in IMG/M
Ga0005239J48904_1021239	All Organisms → Viruses → Predicted Viral	1420	Open in IMG/M
Ga0005239J48904_1021803	All Organisms → Viruses → Predicted Viral	1164	Open in IMG/M
Ga0005239J48904_1022010	Not Available	748	Open in IMG/M
Ga0005239J48904_1028852	Not Available	597	Open in IMG/M
Ga0005239J48904_1029181	Not Available	1002	Open in IMG/M
Ga0005239J48904_1032156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005239J48904_1000013	Ga0005239J48904_10000131	F101265	GNEISGLKLATDLRLKRNYHCRITDVGEDYDLRIIISKSIGGYIVKTSSSEIVETN*
Ga0005239J48904_1001940	Ga0005239J48904_10019401	F000155	MKFFALAAIAAVSANQYDSMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005239J48904_1002882	Ga0005239J48904_10028823	F020178	MNIDSHLFLDKLEQMRELLSSPDIASRADEVFVTQVIKEFYSLIDEYAVAQSPDIDAPEDPEKIKEILGQLTSKIDTIEQHINQETDKLSFLYRISPKN*
Ga0005239J48904_1004410	Ga0005239J48904_10044103	F101275	VRLSGIPVGLGDLLFVSDVEPFKYEYRIGLETLVVRTLNQWALHVRRLSLARTLTLKCLAWGVWLQRLNLNRLAGVCLNGGACGLIRQSAPNLTNILR
Ga0005239J48904_1005582	Ga0005239J48904_10055822	F019481	MFHNILADVNSVFASSAWTSNNIAMYPENYQGSISNSNEFCRFNILPSASDHLAYGGDKSLSGLLIVRIFVKAGEGQTRIMQLSDILDNSFENKILTNKTEFGKSYLNVEGLDPANQSLYSAQYIIPFKIYGE*
Ga0005239J48904_1005846	Ga0005239J48904_10058461	F099869	VGYGYASADAKDGNTTTHNGVHEGQSAIGVSYAMGDLVVSVGKQNLSDQGSTSPDALVSATYTMTADAITIVAQGDNAPSGDYQLNLTYAFSDNMTISSEVDKGKTTTMVGTYTEGDMTFTVARQDDDTTDASIALDYGNADLTIGRVGARAASAAAIGRAAAAEYSHVTYSVAF*
Ga0005239J48904_1005965	Ga0005239J48904_10059655	F047705	MSLSAKVTTAVNKAFTAAGDLVKQGTLSTKAVSTYDFGTRQTVSTITSQTVDVIIQSSQKPSGEGFTITALMKSGVDISVYDVLTVSSKVYNIIDYTDNNFTIEAILTKEAQ*
Ga0005239J48904_1005965	Ga0005239J48904_10059656	F019481	MYDNVLQDIEAVFATSTWTINNIDIYPDNYQGTISDQNEFCRLNVLPSNSQHYAHGGNKEIDGLVAVKIFVKAGEGQARIMAISDILDISLQNKKLTNGTELGTSYLNVEGLDPSNKALYSARYVIPFKLYGA*
Ga0005239J48904_1007522	Ga0005239J48904_10075222	F069748	MQTLARSGSTKTESFHGLHLHLVHEEGPPHYEEKAEIERTSLLQDG*
Ga0005239J48904_1009543	Ga0005239J48904_10095432	F012347	MNRIKHGNINKWSQAKAGDVIEFASSKPRHVKFEVTANSNIEVWVANDNKMSDSVLVGTSNGKTEIQYTASATTYVQIKAEKSAAVFVNIPDINQSVQNSDEPSFTSIEPRVSNSTEFDRMVAFMKHNETQRNAQLEAERTALRAEVAKIKAEAETVVEAPQEAETEDAGETP
Ga0005239J48904_1009562	Ga0005239J48904_10095621	F082723	MKLAVIATAAVMVASTASAFDLGNGLTAGAEVDMNYTTGVELWALEAKPELAFSTMGAALSVGSTFDLMNLNGDDTFKGLDFDASYPIAGTGLTAYGEVSTDADFEFGDIKVGASFKF*
Ga0005239J48904_1009758	Ga0005239J48904_10097582	F083942	MAILNNVELFFAKLDPKKPNARFNADNPTWEVQIRTRDKKQAKEWKDLNINVKPDEDDKGMFYKASLKKKTKKANGEPQNPVNLVGGDLSPIDPNILGNGSVGNIRIYQYDYEIAGRKGVASMLMAIQVTTLKEYTPKPREDDFAMVDMEVVKVADNQVVDEDQFSSSDELEDDLSF*
Ga0005239J48904_1011539	Ga0005239J48904_10115395	F055647	MHIVRKKDGEIIAIASRKEDAIAIADGTQVDKTDYVVQESTNQQELAEVYRSYYGTRSL*
Ga0005239J48904_1015110	Ga0005239J48904_10151101	F001145	NFLETNVVNILLLLGILIYANKTSFSVGLENRQKEIIQTIENAQKDVTNASNYYYLAEKGFTQSLFWLQSWKSLYEKDKIDIVNSKYNLVKKGLTETFNTTENLIKNFENKSFVSLQRYMILVTASRILRKFLFLSEGEQSKLIEVTISKLGGFKK*
Ga0005239J48904_1016335	Ga0005239J48904_10163351	F000200	NGHVFEDFVTSGTTTSRCGCGANATKMVSAPSFHLDGSTGDFPGRHMKWVREHEKAGRK*
Ga0005239J48904_1016808	Ga0005239J48904_10168081	F036257	RDPETAHTPPPAEVFDGGKTLSKIIDKGFPYDDGDNSIEDQTPKWSQKKKDTPINVGKLNGENVTKQALVALVKDTDAPITQGLVQLDEMKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQTSDNNLAQAEGVPVHVNPVIARDTMGDAKLDMKILVGPDDVELKKKAKK*
Ga0005239J48904_1016914	Ga0005239J48904_10169141	F023489	VTTSRCGCGANATKMVSAPSFHLNGSDGSFPGASIKWTREHEKAGSK*
Ga0005239J48904_1017648	Ga0005239J48904_10176481	F009426	VKLKNANFSTATKVNKNVKLLLNMTFSEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*
Ga0005239J48904_1017653	Ga0005239J48904_10176531	F035482	MKYTLAIAALLGAISTEQVSAVAVAYPRHAQYLQQSESESSESSDDEMVQTSGDFFEARENGTGPLDKKYERVAPEHFSTGSDDLFMKSMIMNYAQEGKDKDGAPNGQFFMTEAQTKSAAAEVLGSHKGLDGPAKAEYLKTYFPRTWAHYDVNKAGMVGVEVMPQFMRFLASDQTLNL*
Ga0005239J48904_1018501	Ga0005239J48904_10185012	F001145	MDSNFFSFLLNNEEAEAFFQLNTNFLETNVINIGLLLGILVYANKTSFSVGLENRQKEIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQSWKSLYEKDKVEIVETKYKLVKNGLTNTFSTTEELIKNFENKAFVSLQRYMVLVTASRILRKFLFLSETEQSNLIDATISKLGGFKKA
Ga0005239J48904_1019886	Ga0005239J48904_10198861	F012916	EEVGKADVDGEFTTASDKLDALVKSYMDTNTMKKSEYAVAYSAVAKTDEGKALITKSYKGE*
Ga0005239J48904_1021077	Ga0005239J48904_10210773	F094941	MNKILSTVIATFVASSAIAGGHEQAEVKDGPFLNGTFEIYIDDTNTEGTVDTRLEAMGGYETDLDHPIANWAGFSARFDTNYSLNRALDNTITEKQMGVGIGNNIRLYFGETDAQRLGFAKTSKIGAPVIITKPSSRIDHNEKLVLTFGGWENNDEFEFNTYRLKRDMPYGGVVGWNPEDDSLYYGATARVSILDVSYMGIQKDDETQHGVSAGTSFHRMGVPVGLGIERWEDAENTRMDYGVMYNYSKELMFTAHHVADDDLGFTYNYLAAIHTKGPVELGLYLHQGKEQVSPWTGVKSEIADSVKA
Ga0005239J48904_1021239	Ga0005239J48904_10212392	F047705	MSLSAKVTTAVNKAFTAAGDLVKQGTLSSKSVSGYDFATRSTVSTSGSITVDVIIQSTQKPSGDGFTVTALMRSGVNLSVYDTLTVNTKVYNIVDYSDNGFTIEAILVKEA*
Ga0005239J48904_1021239	Ga0005239J48904_10212393	F019481	MYDNVLDDIEAVFASGTWTSNNIDIYPDNYQGTISTETEFCRLNVLPSSSNQFAHGGIKSLNGLIAVKIFVKAGEGQSRIMAISDILDISLENKKLTNGTELATSYLNVEGLDPSNKSLYSASYIIPFTIYGE*
Ga0005239J48904_1021803	Ga0005239J48904_10218031	F015154	KNYTVTVSSTASSGSTVTGQSSYYLMASSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
Ga0005239J48904_1022010	Ga0005239J48904_10220101	F023489	GVTTSRCGCGANATKMPSAPKCVLDGSSGDFPGRHMKWVREHEEANGKRKSP*
Ga0005239J48904_1023536	Ga0005239J48904_10235361	F068876	LDNSFENKILTNKTEFGTSYLNVEGLDPANQSLYSAQYIIPFKIYGE*
Ga0005239J48904_1028852	Ga0005239J48904_10288521	F046905	VASWLTNLSGYTITAKIIEADNVQGSGQVPATAASSPVVTTLSIIDSNAADNQFDIVIPQDLIDNWDTYPVPDKPVYGFIGLEIADTGVGVNQQIWKPMRGVVEVRYSPTEVS*
Ga0005239J48904_1029181	Ga0005239J48904_10291811	F046905	KITSSSKDLITDDGAILASVIHGEQTRLDIVVGWLTNLSNYTITAKVVEGNNTQGSGEKPVAAEVGGAVITLPIIDTVVSDNQFDIVIPQTLIDTWATTPEPDKPIYGFIGLEIQDSGAGNAQQIWKPMRGLVEVLYSPTEA*
Ga0005239J48904_1032156	Ga0005239J48904_10321563	F019653	MTTAVMSTIFSPLSGLWSSLDRTIQVVGYSKAAAELARLGYHEESKACMMEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003301: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_10m (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences