Sample 3300003299

3300003299: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C43A7_35 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300003299 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099541 \| Gp0061260 \| Ga0006244
Sample Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C43A7_35 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	28662964
Sequencing Scaffolds	50
Novel Protein Genes	62
Associated Families	53

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1
All Organisms → cellular organisms → Eukaryota	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → unclassified Veillonella → Veillonella sp. 6_1_27	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parahaemolyticus	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → intertidal zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.46	Long. (^o)	-122.78	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000020	Metagenome / Metatranscriptome	6197	Y
F000059	Metagenome / Metatranscriptome	3008	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000351	Metagenome / Metatranscriptome	1248	Y
F000691	Metatranscriptome	933	Y
F001478	Metagenome / Metatranscriptome	687	Y
F001583	Metagenome / Metatranscriptome	668	Y
F001716	Metatranscriptome	647	Y
F002003	Metagenome / Metatranscriptome	605	Y
F003081	Metagenome / Metatranscriptome	508	Y
F006424	Metagenome / Metatranscriptome	373	Y
F007527	Metagenome / Metatranscriptome	349	Y
F008818	Metatranscriptome	327	Y
F009123	Metagenome / Metatranscriptome	322	N
F009426	Metagenome / Metatranscriptome	318	Y
F010030	Metatranscriptome	309	Y
F011139	Metagenome / Metatranscriptome	294	Y
F011850	Metagenome / Metatranscriptome	286	Y
F013304	Metagenome / Metatranscriptome	272	Y
F014741	Metagenome / Metatranscriptome	260	Y
F016139	Metagenome / Metatranscriptome	249	Y
F018735	Metagenome / Metatranscriptome	233	Y
F019484	Metagenome / Metatranscriptome	229	Y
F020014	Metagenome / Metatranscriptome	226	Y
F023489	Metagenome / Metatranscriptome	210	Y
F024323	Metagenome / Metatranscriptome	206	Y
F027652	Metagenome / Metatranscriptome	194	N
F027856	Metagenome / Metatranscriptome	193	Y
F027998	Metagenome / Metatranscriptome	193	Y
F032292	Metatranscriptome	180	N
F039152	Metatranscriptome	164	N
F041212	Metagenome / Metatranscriptome	160	N
F043967	Metagenome / Metatranscriptome	155	Y
F045087	Metagenome / Metatranscriptome	153	Y
F047316	Metagenome / Metatranscriptome	150	N
F052608	Metagenome / Metatranscriptome	142	Y
F054056	Metagenome / Metatranscriptome	140	Y
F058669	Metatranscriptome	134	N
F060454	Metagenome / Metatranscriptome	133	Y
F062376	Metagenome / Metatranscriptome	130	N
F074839	Metagenome / Metatranscriptome	119	N
F077370	Metatranscriptome	117	Y
F078182	Metatranscriptome	116	Y
F078787	Metagenome / Metatranscriptome	116	N
F079577	Metatranscriptome	115	N
F080823	Metatranscriptome	114	Y
F081213	Metagenome / Metatranscriptome	114	N
F082736	Metatranscriptome	113	N
F091179	Metatranscriptome	107	N
F093203	Metagenome / Metatranscriptome	106	Y
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0006244J48909_1000541	Not Available	1773	Open in IMG/M
Ga0006244J48909_1000784	Not Available	559	Open in IMG/M
Ga0006244J48909_1001938	Not Available	1778	Open in IMG/M
Ga0006244J48909_1002194	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	634	Open in IMG/M
Ga0006244J48909_1002484	Not Available	771	Open in IMG/M
Ga0006244J48909_1002729	Not Available	881	Open in IMG/M
Ga0006244J48909_1002992	All Organisms → cellular organisms → Eukaryota	759	Open in IMG/M
Ga0006244J48909_1003315	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1537	Open in IMG/M
Ga0006244J48909_1003499	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	571	Open in IMG/M
Ga0006244J48909_1004147	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
Ga0006244J48909_1004504	Not Available	533	Open in IMG/M
Ga0006244J48909_1005551	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1469	Open in IMG/M
Ga0006244J48909_1005611	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1182	Open in IMG/M
Ga0006244J48909_1005766	Not Available	553	Open in IMG/M
Ga0006244J48909_1006510	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	817	Open in IMG/M
Ga0006244J48909_1006538	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	535	Open in IMG/M
Ga0006244J48909_1007098	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	596	Open in IMG/M
Ga0006244J48909_1007279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → unclassified Veillonella → Veillonella sp. 6_1_27	692	Open in IMG/M
Ga0006244J48909_1007328	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	676	Open in IMG/M
Ga0006244J48909_1007342	All Organisms → Viruses → Predicted Viral	1373	Open in IMG/M
Ga0006244J48909_1008144	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	954	Open in IMG/M
Ga0006244J48909_1008342	All Organisms → cellular organisms → Eukaryota	636	Open in IMG/M
Ga0006244J48909_1008593	All Organisms → Viruses → Predicted Viral	1267	Open in IMG/M
Ga0006244J48909_1009507	All Organisms → cellular organisms → Eukaryota → Haptista	881	Open in IMG/M
Ga0006244J48909_1010753	Not Available	984	Open in IMG/M
Ga0006244J48909_1010926	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1386	Open in IMG/M
Ga0006244J48909_1010927	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	780	Open in IMG/M
Ga0006244J48909_1010943	Not Available	523	Open in IMG/M
Ga0006244J48909_1012453	Not Available	1314	Open in IMG/M
Ga0006244J48909_1013627	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	519	Open in IMG/M
Ga0006244J48909_1015456	Not Available	1191	Open in IMG/M
Ga0006244J48909_1015561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parahaemolyticus	551	Open in IMG/M
Ga0006244J48909_1015596	Not Available	561	Open in IMG/M
Ga0006244J48909_1016013	Not Available	670	Open in IMG/M
Ga0006244J48909_1016652	Not Available	721	Open in IMG/M
Ga0006244J48909_1016804	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	629	Open in IMG/M
Ga0006244J48909_1016835	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	696	Open in IMG/M
Ga0006244J48909_1018930	Not Available	589	Open in IMG/M
Ga0006244J48909_1021133	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	752	Open in IMG/M
Ga0006244J48909_1021161	Not Available	554	Open in IMG/M
Ga0006244J48909_1021419	Not Available	632	Open in IMG/M
Ga0006244J48909_1021983	All Organisms → cellular organisms → Eukaryota	526	Open in IMG/M
Ga0006244J48909_1023173	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	609	Open in IMG/M
Ga0006244J48909_1024609	Not Available	872	Open in IMG/M
Ga0006244J48909_1025313	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	628	Open in IMG/M
Ga0006244J48909_1026890	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	640	Open in IMG/M
Ga0006244J48909_1027084	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	617	Open in IMG/M
Ga0006244J48909_1029676	Not Available	536	Open in IMG/M
Ga0006244J48909_1031226	Not Available	522	Open in IMG/M
Ga0006244J48909_1036691	All Organisms → cellular organisms → Eukaryota → Sar	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006244J48909_1000541	Ga0006244J48909_10005412	F019484	NTLYSLYYYFLTILGGSLKKIAKKITTNVPISKKVYTNASII*
Ga0006244J48909_1000784	Ga0006244J48909_10007841	F101265	LGGNKISGLKLATDLRLKRTYHCRITDVGEDYDLRIIISKSIGVYIVKTTSSEIVEAN*
Ga0006244J48909_1001196	Ga0006244J48909_10011961	F000075	NLQMKFAAALIATVAANRYENMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0006244J48909_1001938	Ga0006244J48909_10019382	F019484	IFLFLYYKFIYFLTILGGSLKKIAKKITIRVPISRKVYTNASIF*
Ga0006244J48909_1002194	Ga0006244J48909_10021941	F016139	MLVGSVMGISSWSHRCSFLAHTSDIDDLLEGLDGVLEDWLNGLHDTESSLHIVDLWLHTLDGLHLSGDLNEWLSVIESLEDSGGESLLDVLDGSGLGNGGIGITSGLKLERRVEVGLEGDEEVILVHGLISLHGLEELWLLVVVVVVSGGNSGGEESEFHGLK
Ga0006244J48909_1002484	Ga0006244J48909_10024844	F007527	PEQSRIKVFKSGISIGSKGSIPLGGQIEPSSIVGAKAAAKKAQKKAKKNIISETMNKIIP
Ga0006244J48909_1002729	Ga0006244J48909_10027292	F020014	GIKSSNWPKESYKDEPRPEYAPKKNSVNKPPAASPPTVATIQRGTLPISLILIIVIKE*
Ga0006244J48909_1002992	Ga0006244J48909_10029921	F006424	LEIGITALGSGWVNAVFVRDDFPEFGTDLVTALSSLNMYDFSH
Ga0006244J48909_1003315	Ga0006244J48909_10033151	F010030	VLLLQFKILLPEGVDTINHGLDELNLRVSKTMFVGNVIGVSSLATRFTTGATGLETHAIASGLQSVNGVLGPSGEVDVDGCTHTSSQVGGARVNITEFGGDLEVLARFSLDGISDSLDTTGKTLENTLDITTLLHGDDTELILLIDPDQEGLGGIVEDTTALGPVTLHTGNLQVGVTRDEEEMVINKLLTDSLFHTSQGIVVTGQISFQFSESVLHEGLNINTLLFGDSGGKTESLDGTSNTDSARVNGDLGVNIGGDLGGIHVRGVLEVSRKTVVLHDEGIENISEIDVRIFITSIDTAMLVVEFNSASDGLGQSEAGGGGHMVAQFGPLFSGGVLGGQGVSRSDLREGSHGLC*
Ga0006244J48909_1003499	Ga0006244J48909_10034991	F024323	MNLLESIWFLIAFLLIAIVLLIDPKSSIAGSSTSPVLGAFSSPSSGQKFIYQFSAVLIASFLILTVLNYGS*
Ga0006244J48909_1003557	Ga0006244J48909_10035571	F000075	MKFTLFAIAVAANRYDSMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0006244J48909_1004147	Ga0006244J48909_10041473	F027998	RIILSDELTNTSAAEIGITTITTANITLLKNALNEGVILITDLTF*
Ga0006244J48909_1004504	Ga0006244J48909_10045041	F009426	MTAEVNTDLKLPSDVAPSETSCTIMLFMTTSPRVISAGAVIETLYEGKADYCMIVCE*
Ga0006244J48909_1005156	Ga0006244J48909_10051561	F000075	FTCFAIAVAANRYENMNEDDLLVSLESTLSSAQASEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0006244J48909_1005551	Ga0006244J48909_10055512	F014741	LNNTKAAWEGYGVGLETVAVEFEKCEGEITKVKKRFNLIAAQEDLAKRQQIFGATKGTIDGIYGKIQSDYACMTMTLPEDKKDFVKKEVNAVTDKLEVLGRFKEKVDKIDEFVTELKNFDVTLKEIDAWMTGADKELDTIKTASDKMTPEDRVSYTMELTEDVAAKVDVIKKAVAAEANLLPQGDQVPQDAQDYKIELKRIQDYVVDLHKRVMATCDSFSEDVKFWAEYKTGIKGFKPWLGEAEKKSTEGLSKPQTLDEANAMFAVVKAFEAACLKHLKILEEAAAASLKMTTHKEADVE
Ga0006244J48909_1005611	Ga0006244J48909_10056112	F074839	MVLFAENTNKTLRALSLFYIKDEEFLINTVFLLFLGLKPFFAGILAHGVNHVVDAGDFREIVPGWISRTFSDVERLDDSVVDVHGETFGSPRTKLGARSWVRQFDAQVFNHNGVRVTHERNVRARNTLCLSPRIHDLRVVGTENDHLIDPSALQFILSGNITRNLTRGSCRCESTWKADQDDLFAFASFSHVDWCWHAIDPRTELQYATDLISNFSTHCARR*
Ga0006244J48909_1005645	Ga0006244J48909_10056451	F000059	DDLVAECTQKSSDFEQRQQLRTDELAAIDKAIEILSSGSVSGNADKYLPSFVQKKTSVSFLQLSVGSKNPSQARVAEFLREKGSAINSRVLSALAVRVAEDPFVKVKKMIKDLIVRLMEEANEEAEHKGWCDTELSTNEQTRKEKTAAVETLHAEIDELSASIAKLTQEITDLTAEIA
Ga0006244J48909_1005766	Ga0006244J48909_10057661	F045087	NKEQLKTKVDALQANLDVRKSELSNAQVELNVALNELADAGKPVISCDLAGDLMDQIEEMFSETLLNLCASDLDVEFGIGYDNRIELENVDMSNVGFCRHDLEAVFEVFFAIQDDEESDNS*
Ga0006244J48909_1006510	Ga0006244J48909_10065101	F058669	VITAHCLIVGFLAGLGWQGKGNSVAVRFSQDDLDLVDNIDGINKFGNVEAFLFLNIFADNLGKDDVLDDAGLDGFGVGQFDGDVKGSGDKGDFVSLGLVFLTAVLVFSSSVVIAITGGFAACDLHGLGFVLISHLGDLSGENIQFGSVAVCAECVFSGFLGDDTDGSDLFITVIGILYFLNSQGNGGSFGGESGHADLSVDRGVGIPAVDLWTICWGMMSVCWGMVGKSHERQKSQDKGLHN*
Ga0006244J48909_1006538	Ga0006244J48909_10065382	F024323	MNILESIWFLTSLVIIGIVLAVDPKASISGSNNSAVLGMFSSPSSGQQFIYRFSAVVIASFFLLSLGLSYVG*
Ga0006244J48909_1007098	Ga0006244J48909_10070981	F091179	QLLFPRMLSVVASSALSLNIGTSALTSARAAPSMAAALETKFVYERPAPIGTTTGPEYPNTALHAPKLEGVVGKVVPTNMNGKSPKFLQQDFLFGNPKRPGVYSEQCTPPSMGENRRSWQAYHAPF*
Ga0006244J48909_1007247	Ga0006244J48909_10072471	F000020	EATAIRAEEKATNEQTIKDAVEAQTAVAQALTVLKEFYEKAAEATALLQGKQKPEVFDEPYTGMQSENGGVVGMLEVIQSDFARLETDTKAAEAEAQKAFDEFTSESAVNRAANAKDVEHKTTKKTNQEAALTAKKADLEGTQKELDAALAYYDKLKPSCVDAGVSYEDRVARRKEEIESLQEALRILNGEDIAFLQK*
Ga0006244J48909_1007279	Ga0006244J48909_10072791	F009123	MLYKMIVACTIVGAMAGTAEVSTSNLRSGAAFDNLKATWGKALSIGDFKSDLECAYDYNGDKGGLKSASLSGNLIDGSGDDLSLDYELTKNFGGDKTTEVTLTAAVSGSTITAELDSVDNLKEVSATRTVTIGDRDIDLKPSFLVKAQTARVKLMSAFGNDKVSATVDYETKDSELGAIELGYERELEAGRTLTATLTPADKNLELEVEDTKFES
Ga0006244J48909_1007328	Ga0006244J48909_10073281	F011850	PQGFTAPVNHFASVIGLWVAFALPVWSAAYKQAGCDTPDWFGISQVAEDAPGIGLIAKAAPVYDGPTFREGLEYVFSFVWKPPILIAWKPRADLDREAMDPARDTVVSSLYKSFGGALDKTAIYDEEDQLLIISEIEELAPTPLGLRREAIAEAAGWYSGNPSFGKSLLEYSEETRKGKRDTGTVAISVEELQQLRAEAARRG*
Ga0006244J48909_1007342	Ga0006244J48909_10073422	F081213	MKKLACAVLLLYSTSSFSELGDNWNEKLLLEYKDYTGVALGAMANYHIRCGGISPEGGEFIEKAVELHNFDVDNTQTNEFYERGFQQAASLTCQKVRRGFSMLNMVHLLAPGEHYDD*
Ga0006244J48909_1008084	Ga0006244J48909_10080841	F000351	MIFTVLLGLAAAVDMHQKVTPVQKVIQLLQGMAEKGKKEKHEEQVQFAAYKQFCDDTTVEKQRAIKEATAKMEQLVAAIQKAEADAATLAKEIAQLDEDISVYEGDKKAATEVREMENADYLTTHKDYSESVDALERAIATLKKQAYDRTQLLQVSQLNLIPEHAKKVIGAFLSQGDELG
Ga0006244J48909_1008144	Ga0006244J48909_10081441	F047316	MIQHDGWRVLLEEYTKLAESLEKIYDIEDEKTLHLRRGQVSFLNMFINLEEATKLALEQLD*
Ga0006244J48909_1008342	Ga0006244J48909_10083421	F082736	MLSRLSLSSNLVGFDTGSELCLLSSSVFLRFFRSRYRFFLFLQHKLDVARRRHVRVDATVRSVRSSSLRDGLIDLDVRDVEIVNVQPLNLGIRFRVLEQVDQDLRALLRPSALAVRGAFLLGLSRSPDATAKSAKDDASLHLHNRVQETLRVAQTSPLDVHRRFSHVLKMNSQIRASSFARFRRVVG
Ga0006244J48909_1008593	Ga0006244J48909_10085931	F060454	RDLVKELTNLKEIYSKIDSVESERDLWFAKGQVSILRQMIALEEATKLAVEELDI*
Ga0006244J48909_1009507	Ga0006244J48909_10095071	F001716	HFHLRTALLDLMALAVAALSALGNTAEISSTDLRKGAAFDNVKASWNQALKLGDFSTKLEAEYDYSANKDFLKEVTFTGDLIESSKDDDVTVSYEVTHDFADKNTNVKLTANTQGTTLGAEYDRSDGFKEVSAERDVEIGDQSVNVQPSWLVQAKTARVKLMSKLSGGDEVSAQIDYKTEGGDVTYEVGYDHNLEDGRDVSATVKPASKELEIDYVDTKFESGATWTASAAVPLENSGSSNILDAAKVTLKRAWSW*
Ga0006244J48909_1010753	Ga0006244J48909_10107531	F041212	EKLFVRDGRAMSKAPFWHKNFCLEMFEDRQTRPFETRIWSLVTPIEEDPVGSRVHVFEDIRIT*
Ga0006244J48909_1010926	Ga0006244J48909_10109261	F027652	MFKSVFPKFNKESFGQRLEKVPKEFHKYMVEQQRFIRLRQSAEAILKRKKPLLEEMVSKVHDHERKNMDVYVLHDSTLPRDLVIIFRHDKSGEYNNVSSPEIDRLRQKIQHCKEEIIKLQEQIYPRGTEDGLSPEEKYDRIHPKGYYKNEAATRRPTKEEHDINTTEFSVWDKPDTRTPFQKGDEPVLSDLKKAGVYVYPFSNCPVKWKTPTDVETPPERIHVTYCDHIENTEETSESDEGSEN*
Ga0006244J48909_1010927	Ga0006244J48909_10109272	F027652	FHKYMVEQQRFIRLRQSAEAILKRKKPLLEEMVSKVHDHERKNMDVYVLHDSTLPRDLVIIFRHDKSGEYNNVSSPEIDRLRQKIQHCKEEIIKLQEQIYPRGTEDGLSPEEKYDRIHPKGYYKNEAATRRPTKEEHDINTTEFSVWDKPDTRTPFQKGDEPVLSDLKKAGVYVYPFSNCPVKWKTPTDVETPPERIHVTYCDHIENTEETSESDEGSEN*
Ga0006244J48909_1010943	Ga0006244J48909_10109431	F039152	GSSRKKMIAEATGTRRSNWKLYVVAITCVCFVAGMLVNSVSESAPADNKLDSVVTQALKMFHGSKANMPNDDDYLAGEADFQKRFKTLKGKADLYLQNETLTAWKGMNAKNVLVAGAIEKAFPQKDIKVAIAKALAGSGSGSGSASA*
Ga0006244J48909_1011831	Ga0006244J48909_10118311	F023489	SRCDCGANATKIVSATRHILDGASGDFPGRHMKWVREHENAGQTSKES*
Ga0006244J48909_1012453	Ga0006244J48909_10124534	F007527	MVAPEQSNISVFNSGTLLASNTSIPRGGQMLPISIVGAKLAAKNAQKKAKKNITSETINRIIP*
Ga0006244J48909_1013627	Ga0006244J48909_10136271	F001583	LLSYMHILKKIYLKNYVTSESDGLLGGYAFMFHYIIALGISLSATHLSDLTLTIIANIFSVFNNIYKTYYIMFTNKHLNTDQLTRFMVLHYFTPYYLYLVKLHIMFCHESDTDSGESTYEDKTGSYVSFYDGFLKEIQDAYTIFGFMYFFMHHFQGATVNYFFF
Ga0006244J48909_1015456	Ga0006244J48909_10154561	F079577	FPSRAPFVAAMAVPNYLLEEETPSRTTGYRKAAVFLASIALVAVVVTIAVTAGAPTQELAAKAKKATPLKFGASVTLMTSYNEYITVDKAGTIVMNGFSRGDNAIKIVSPKGKKAAVKYGDKCSLMGQNGKYFLARYSGKVTGRSTVISRDSEWSIVGGSGGVQIGDRVSFKDEFGYLTVQTDGAGTNAQAITVMQKYLVGLPGQENGLRLATGLMYGEVVSLMNKNQQYLQIDHNGWGTVHGHPDGNWDHFAVLSNEHREGHVSFGDRVVLRAHNGRFISIRQDNKALEAVSRSITDQSQFQMLGTMSGASTGYVHSRDMVVLKAASGYLEAVPQGNAVRAVTGPTGHYTPNSEFQLKKVWDATL*
Ga0006244J48909_1015561	Ga0006244J48909_10155611	F054056	ETGDLLGLWELLSVVLFLTWSLAISIVGYVEGALLWERYETMEAAGQTVTIVQGYKYLALGMVIGIGAWISGLALGDSAEELLGFFDNYAQHTKTEATDKDGNVDADGTAIEYDLMFHFITLLFSYLTISAIAIGGYAFGYIYLG*
Ga0006244J48909_1015596	Ga0006244J48909_10155961	F080823	CLFVFTVNPLMGVAVANGVAGIIGTFWACFHMWVMNGIFPGGMKEGMSPTSACAIFGWVNFMAFTFIFLFVKCGMGMKMFAMATDIGFMLAFLDPASTVPFSENFTISHKGTAVNTLLATAIACFIAPLLNLIPYPFSLASSNMKGNAVSASKGTAKLFSAVINYYNGSEYSVVIESELKHSVDLR
Ga0006244J48909_1016013	Ga0006244J48909_10160131	F093203	MYSNKIKNLLINNQLLKSDFFDLKRYSFFLKKNNYRFSFYKYKKVYHQLKTLVFILKSIHSVGGTILFIGLGKKDYVDYLSFNNILKKFVIKRGHIYADSKFNGFFYNRWSLYKRSSNPSELFLNLQKNNKFPLLLFSFSKETDGAIFREFGKFGTPIIYIIEGSNHFEFKDYPLMGSYSSQMLNFYLSILQYSLK*
Ga0006244J48909_1016652	Ga0006244J48909_10166521	F078182	SLTFSAMAPLTAFVLATVASADPEQPHLAQAWQAMSSGDGIPGEVGLESYLFLAQDEGDFQGHVWDYGESCKKFELNSHKSSSEHSDFQTGTWYYKCNTVDCCFHGHAGEYKPSTQYWPDVKQWDISTQGKLSRTEVSFDGFKDVTELFDNVVPGAEQWSEKHHPLPVNYSYHLHREDNGDVISHRIDYSAIGAAPGSILYGNFTVQHDIESFKNAFFTLPAQCQSGYVRGCGDVEEIE
Ga0006244J48909_1016804	Ga0006244J48909_10168041	F078787	KIFIYNRVLLNAKGECNYFQPVFSSNDFKGADRAEDTDSLLDQIYQEFNAGNARFGDDMKVEFPVVGKMDKAGMFELFAKFGGCQRAMQKGCVPVNMSTGKDEVFEGIVPCVYSFKWSSALNDVFKLELADGADVVLSSYDCLKIKSGKVISFAPHFDPAANIKPAGKSGAA*
Ga0006244J48909_1016835	Ga0006244J48909_10168351	F043967	AVVASAAAFTPAAVPTIRGNTAVCANKFGQSSPAGAPPADLFNIWRDDYMLTPAQAAAEEAERKANTFFDGVLPPFSNIGNTERGEILDAPTLRGVGLKADFSTANPTSAYDTANFGKVEIFNKDVLKNPITGEGPEIAGKKTIAAAEKRADTPSYASQSLANFARWRRGEKTDDTRRFDLQKGDY*
Ga0006244J48909_1017022	Ga0006244J48909_10170221	F000237	LNNAYKTYYIIFTNKHLNTDQLTRFMIFHYFTPFYYIYLVKLHVLFCHESDTDSGETTYEDKSGTYVSFYDAFLKEIQDAYILYIYVYFFLHHFNGSTVNYFFFERNIAELDEIRFYGVAPHYFRPYMGILVISPTHYEGLMMGLFLGSLALLPLIYNVYNTFNKYVPTIPMQNSLLQTTAFTVFMMSLYCANSMLPCGRYYYEPEGGYVGNPVKFSYQYMYLYLC*IVHHLDLIDHYIFQFTQTFLRKLNPLTKVFSTK
Ga0006244J48909_1017394	Ga0006244J48909_10173942	F011139	MGMLIVCPTHYEGVFWLLFYLGLLALLPICYNFYNSYNKYLPTIPMQNSLLQTTAFILFMMSMYCSASILPCGRYYYEPEGGYV
Ga0006244J48909_1018552	Ga0006244J48909_10185521	F000237	DSDSGENTYEDKSGTYASFYDAMLKEFQDGWYVMYIFIYFALHHFNAATVNYFFFERNIAEMDEIRYYGVAPHYFRPLMGMLIVCPTHYEGVFWLLFYLGLLALLPICYNLYNSYNKYVPTIPMQNSLLQTTAFILFMMSMYCSASILPCGRYYYEPEGGYVGNPIKFSYQYIYLYLAILHHLDVLDHHIYQFS
Ga0006244J48909_1018930	Ga0006244J48909_10189301	F077370	QQRNRQNNRKRILKNNSQQLAVPRPMSILGETVDRAIDILIDIYAVNSVGTPFYSFSNSQGSPTMSVNITDLMILQFTEYSDLVRIYGLSKLKKIQLGFTRSSNFIGGGSQIIQNTPSFFLQASTIPYTAGSAQLQRAVAQADNAIEIDLQTFDPKAFNIMLPPHIVSNNRTNNQTFVFGSQTWVSTRLNNVQNFP
Ga0006244J48909_1018943	Ga0006244J48909_10189431	F000073	EDKKAFALAGGKVSTPTENLKLGTTFVAWMDERKNLRAICDDGKGKLQWEREIPQEALDNLNNLATTDFKANLGKIIHDIYLTGHNMFKDMPQGDHKKRAKYRFASKTLMRILPTELKTEVEGLIAGKTMTLDLYEILGQCTWGQGKSL*
Ga0006244J48909_1021133	Ga0006244J48909_10211331	F062376	EEELTTRNALSALPARGWYRGVLERRLGAHQPPSRAAVSHNRAAAQMVDMETIIGVGVTLLGVGGGVGLIALTENAGKRNDEMANQQVCFECKGANVIECSLCKGTGTDPFADLVKGVQEMAAGDVPPPPPASDKIKIDDWDAGQKEVVMFEEILADYPVKATEKVCLRCSGRGVVVCDNCDGTGIQPRFLERYSPDDFMD*
Ga0006244J48909_1021161	Ga0006244J48909_10211611	F008818	AIEKGMGGFLQTSTASVLRQLSISLDMSSVDREMLTGFLSGKNGYSPASGEIVGILKTMHDEMSADLKSATDDENAAIAAFTSLKAAKEKEINALSRAIESKMGRVGDLGVKIAQMKNDLEDTIEDKGESEKFLRDLAGNCEKKKKEWASYKEMQGQEMLALADTIKVLNDDDALELFKKTLPG
Ga0006244J48909_1021419	Ga0006244J48909_10214191	F018735	DSRKIDWKAIHKIACYIKVLISDGTNQERTWALENCESGNLNTLATILTGFNETNYLSIIIPEISGNVSCWDMDVPPLIDFKECDMSSVHQFPCTETWMDRYNGLESPTNCRECAALPEHMQYSDKDYQNANGHAKLEDYGGGWIFVNELGRSAEDINDLSEIQPEGYFLPDYNMKGLKYNDVLIQRVSANWCDSWGRQTSEWVGEQGAS
Ga0006244J48909_1021983	Ga0006244J48909_10219831	F000691	AAQGVELRGHAAGEPMEVVTNVKQVPVVGKQFNARGVTVAMQCVVSLTIQFMIVYTALAICRMAADSFGLKYDNVPIQKILQTATLTVAFAPMLAILFLAYRMRVNQLTKNRGDPPEWAQVCMYFCTYAVLLMTLCVCVIPLFTGEVMSVDPKTGQIPEDSEPFKSQACAIAFTA
Ga0006244J48909_1023173	Ga0006244J48909_10231731	F052608	AAQEDLAKRQQIFGTTKGTIEGIYNKIQADYTCMTQTLPEDKKDFVKKEVAAVTDKLEVLGRFKEKVDKIEEFVTDLKNFDVTLKEIDVWMVGADKELHIIKNDSDKMTPEDRVSSTMELTEDVADKVETLKKWVAAETVLLPQGDQVPQDAQDYKTELKRIQDYVLDLHKRTMATSDSFSEDVKFWAEYKTGIRVFKPWLA
Ga0006244J48909_1024609	Ga0006244J48909_10246091	F032292	ATGVELDAFTKVKKAIDDMIAMLKQQQSDEVKKNDYCNKAIQENEMTTMKTEDLRDDLNAKVGSLESTITTLNKEIGEAKEAIRAAQLDLQRASQDRQVENLDFQKTIADQTVTIEILHKAMDRLAEFYDSVELLQRHKQTPPVAQAEYKPNAGAGGVISMIEKLIYDAKDLMAKAKESEGEAQAAYETLVADTNASVDKLTKEVATKTEEVAKAKKDLINTQGDLEDTIDELEGLAKYNSDLHAECDYVMKNFNARQKARGDEINALQEAKQILDGANLGF*
Ga0006244J48909_1025313	Ga0006244J48909_10253131	F013304	VKAIQEKLEVVGRFKEKVDIVDAFVTQLDNFDKTLKMVDSWMMEADKQLNDIKNNSDTMTPEDRVSCTMELQEDVSEKMEIVTATIKSELDLLPQGDEVPKDAQDFKVELKRISDYVTDLNKRVMTECENFSQDVKYWAEYKTGIRGFIPWLAASEKRATGGLSKPQTLDEANAMYAQVTEFDQNALKHLKILENAETAANKMTTHKEA
Ga0006244J48909_1026890	Ga0006244J48909_10268901	F027856	SWVAADRGAEGEQNFSLEKMESTLGELKNIFKEKEKLVENL*
Ga0006244J48909_1027084	Ga0006244J48909_10270841	F003081	EMFNDTRYGAEVYYMHVRGVDTLMVLSYVHILKKIFLKNYVTSESDG*
Ga0006244J48909_1029676	Ga0006244J48909_10296761	F093203	YFLKKHNYAFSLYNYQVIYQQLKLLVFILKRVQVKKCLVVFMGLSKKDHVNYLLFNQILKSLVIKKGHIYADSKFNGFFYNRWSLHKRRSNPSSFFLDFQKNNKCPSIIISFSKKTDNAIYREFSKFGIPVIYLLEGYSHFEFKDYPLLGSYSSAMLNFYLDFLKYCLNDV*
Ga0006244J48909_1030039	Ga0006244J48909_10300391	F001583	YLYLVKLHAMFCHESDSDSGENIYEDKSGSYISWFYDAFLKEIQDAYTLYVFLYFLHHFTPSTVNYFFFERNIAELDEIRFYAVAPHYFRPLMGLLVVSPSHYEGLM*MGLFFVLLGALPIIYNWYNSNNNYLPIIPMQSSLFQTSSFILFMLSMYCTSSMLPCGRYYYEPEGGYVGNPWVKFS
Ga0006244J48909_1031226	Ga0006244J48909_10312261	F001478	MDIHGGVDDENRNIIVWAKHGKVNQQFDVLYTDQWKGEPGKGQLNKDFGLYVERDFYVITHMNSRRYLDVINNRNMVIKTQNGRRTQIWYFHQQSLTIRTRYNNQSWDIQSNGGSQEVRIWSTQSNSRWW
Ga0006244J48909_1036691	Ga0006244J48909_10366911	F002003	SICEDMCKEVGAYPKCSQCPAFVPPDATPGVMTWEELLTHMDNLSEWGHGEIKAWTKQASALQTNQFSGFTEEMKHRALVQNKLASICEDMCKEVGAYPKCSQCPAFVAPDATPGVMTWEELLTHMDNLSEWGHGEIKAWTKQASALQTKAVVSEDLKRRTQLQNK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003299: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C43A7_35 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences