Sample 3300002986

3300002986: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-31A

Overview

Basic Information
IMG/M Taxon OID	3300002986 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0084162 \| Gp0055545 \| Ga0004688
Sample Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-31A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	229709800
Sequencing Scaffolds	31
Novel Protein Genes	35
Associated Families	25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5
Not Available	12
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Belliella → Belliella baltica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces flavidovirens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas parafulva	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Alaska
Coordinates	Lat. (^o)	71.28381	Long. (^o)	-156.5985	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010231	Metagenome	306	Y
F017253	Metagenome	242	Y
F029737	Metagenome	187	Y
F029738	Metagenome	187	Y
F030615	Metagenome	185	Y
F042098	Metagenome	159	Y
F051904	Metagenome	143	N
F053674	Metagenome	141	Y
F063150	Metagenome	130	Y
F067243	Metagenome	126	N
F067652	Metagenome / Metatranscriptome	125	Y
F070687	Metagenome	123	Y
F076572	Metagenome	118	Y
F079367	Metagenome	116	Y
F080207	Metagenome	115	Y
F084901	Metagenome	112	N
F087142	Metagenome	110	N
F088360	Metagenome	109	Y
F088781	Metagenome	109	Y
F088782	Metagenome	109	N
F092168	Metagenome	107	N
F096293	Metagenome / Metatranscriptome	105	Y
F097269	Metagenome	104	N
F104110	Metagenome / Metatranscriptome	101	N
F106196	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI24142J45722_1000399	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	25166	Open in IMG/M
JGI24142J45722_1000913	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	15481	Open in IMG/M
JGI24142J45722_1000940	Not Available	15135	Open in IMG/M
JGI24142J45722_1001290	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Belliella → Belliella baltica	12508	Open in IMG/M
JGI24142J45722_1002967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7008	Open in IMG/M
JGI24142J45722_1004766	All Organisms → cellular organisms → Bacteria	5010	Open in IMG/M
JGI24142J45722_1005269	Not Available	4663	Open in IMG/M
JGI24142J45722_1008326	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3330	Open in IMG/M
JGI24142J45722_1014857	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2166	Open in IMG/M
JGI24142J45722_1016661	Not Available	1986	Open in IMG/M
JGI24142J45722_1017592	Not Available	1906	Open in IMG/M
JGI24142J45722_1021678	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1619	Open in IMG/M
JGI24142J45722_1025726	Not Available	1410	Open in IMG/M
JGI24142J45722_1034184	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1126	Open in IMG/M
JGI24142J45722_1034250	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	1125	Open in IMG/M
JGI24142J45722_1040862	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	981	Open in IMG/M
JGI24142J45722_1043748	Not Available	932	Open in IMG/M
JGI24142J45722_1043770	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium	932	Open in IMG/M
JGI24142J45722_1046187	Not Available	895	Open in IMG/M
JGI24142J45722_1060206	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	733	Open in IMG/M
JGI24142J45722_1062404	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	713	Open in IMG/M
JGI24142J45722_1062926	Not Available	709	Open in IMG/M
JGI24142J45722_1068837	Not Available	665	Open in IMG/M
JGI24142J45722_1068874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces flavidovirens	664	Open in IMG/M
JGI24142J45722_1075317	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	622	Open in IMG/M
JGI24142J45722_1076210	Not Available	616	Open in IMG/M
JGI24142J45722_1076518	Not Available	615	Open in IMG/M
JGI24142J45722_1078369	Not Available	605	Open in IMG/M
JGI24142J45722_1080118	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	595	Open in IMG/M
JGI24142J45722_1090769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
JGI24142J45722_1098935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas parafulva	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24142J45722_1000399	JGI24142J45722_100039930	F084901	METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSVTNKMAEEL*
JGI24142J45722_1000913	JGI24142J45722_100091312	F017253	MPYNVGSYTQGRIAGGFLSSRKAAQAERCTPKTTAAALDG*
JGI24142J45722_1000913	JGI24142J45722_100091314	F017253	MVASIFKLGHNVGSYTQGRIAGDFLSNRKAARAERCTPKTTVAALDG*
JGI24142J45722_1000940	JGI24142J45722_100094013	F080207	MTTRKTSIVIALCFVLIGTLTXTKDVTAASTDDSAFQRFDIAIGDYKYGELTIDPATDQFFAIANVGKGSAHECVTLVAQKDGASPQHISIAHSTVSTEGRVHWEGPLTTAQLDWINSYGYGAVFFARGAN*
JGI24142J45722_1001290	JGI24142J45722_100129010	F029737	MTEFEFLEELEASRKSFEKLNYIFIRDMHKYIRKSTVYDSTFFKTILNYSVNITLTAEWIKLLKDFNSDIYNNILRFSPDFNNSIGVPDAIKKSVRQQHQR*
JGI24142J45722_1002967	JGI24142J45722_10029676	F051904	MMARRWLLVVLCGVIVLTLVTMLVFREFDFGTSLPSGFPNNVPIIPGTITSCKTARSDDLVRVVEVRIQSGLPFQDVVQFYRTAFATGATEHWNXPEFPLSGPGATETSSNALFGKNTVIVMINATGATTSVLVQVRGTSIFTLPR*
JGI24142J45722_1004766	JGI24142J45722_10047664	F029738	MSQYKNDPRMITAKFSSSCSKCKTKLLKGTSFYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAY*
JGI24142J45722_1005269	JGI24142J45722_10052698	F079367	MPINLDKVAAKIKKMLTRGDVARDAAWYKDNIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYFDNLYESLKRPQSEEVEK*
JGI24142J45722_1008326	JGI24142J45722_10083262	F067652	MNAGDPXKIGLVRLLSRESDMPIVVKITEKVKAVGAKGHYYKDVSKQGLAV*
JGI24142J45722_1009051	JGI24142J45722_10090512	F104110	VSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKGMNRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24142J45722_1014857	JGI24142J45722_10148573	F029738	MSQYKNDPRMITAKFSSNCSKCKTKLLKGISIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNRCGNPYAY*
JGI24142J45722_1014857	JGI24142J45722_10148574	F087142	MTEFQFLENIEFYKRRFEKHHHKFIRDLNLYIRNNRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYINILRFSPDFNNSTGVPGAKINPRGSGNNE*
JGI24142J45722_1016661	JGI24142J45722_10166614	F106196	MTQDDKNETIKCTVSCPECGAEMICTHEDSKHEEKHRCEKGHVWA*
JGI24142J45722_1017592	JGI24142J45722_10175921	F010231	AYVHWLADVHLAVFAPALTLSFHDSECSRKPPNAHSLGR*
JGI24142J45722_1021678	JGI24142J45722_10216783	F076572	MKKLLICLFVVFTFIGCTTTSTPTCDQDYTFRMEFTNGSXDPYDXXINDKFQQIMGAKSKVTYDIPAGYWSAEVVQRSGYTTYQIDNVYSNTYESCTEYYIVF*
JGI24142J45722_1025726	JGI24142J45722_10257261	F067243	MTDARTDSPQGQAWSGPMRATAKQSLRYRLTTSGLVLTLVXPXGSGLWRLSRPTDGLELLTLAGAGPELLRCGYIIDRRGVETAVALGHRQNGHLPEEVRFTTRRIRWRQELTVDPVLVVGDLWVAEAIGAFDVVSVEGRDSTSTTGLDGQFRHVF*
JGI24142J45722_1034184	JGI24142J45722_10341843	F096293	MVLISTPFITFQDIKVKDIDLVEDAWGLNSEYWDVIELLRQINPVPERCLTTCLIRKIR
JGI24142J45722_1034250	JGI24142J45722_10342502	F029738	MSQYKNDPRMITAKFSSSCSKCKTKLLKGTSIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAY*
JGI24142J45722_1034250	JGI24142J45722_10342503	F087142	MTEYQFLENLEFYQRRFENHHHKFIRDLNLYIRNNRVHDGVFYNTVLNYSLNITLTASWIKVLKDFNSDKYTNILRFSPDFNNLNGVPGAKINPTGSGNNK*
JGI24142J45722_1040862	JGI24142J45722_10408621	F063150	MRLFLVITMFLFATPVAWAVSYPPHVPATGLEEFTSVEAIKFRDAQGTSTPPSIPKSWKLISVSTGEKSNSNNLWFQDADGSVYLLQGFTSQNKFFIYENVYKIPAK*
JGI24142J45722_1043748	JGI24142J45722_10437481	F042098	KKLIYLFIMVVLSVLRTSAQETGKAQEYKVPAAYRFDYKVVYEINNEEKKAPETANYYFTKNGDYMSMETADSQKEKDMNFMIRTKDGMMITFGEESVPKNPDKNRKVLKVMDMHSMMKGSGEAMAALAKNMPGKEKADAEKKKPNEMDNFVKTGKTKQVFGYTAEEYSKEITKEENGKVHSGTMSVWYAKVDFDPEMMFSLGMGNLAGGQSQSKMHPNNMIGLGMTQKNYLMVEMDYAEKGGKSGTGMKVVGIEKTNFSKSTEGYYVKNYAGMSMKEMMQKENEER*
JGI24142J45722_1043770	JGI24142J45722_10437702	F029738	MTRYSNDPRQITAKFSSSCSKCKNKIMKGATIYYWPSSHEVFCTCCGDAPYRQFLSSVADEDVYNGTGNPYAW*
JGI24142J45722_1046187	JGI24142J45722_10461871	F088782	VEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLLDREKKVLRVRNRNPRSGPPRVFPGRTTGVTNPDLDPRAVWQLSHMVDVALRRDERWALAPGGHGSSDYFLGLETGPWQGQRRLIVTAQPAVIARQWAGARLGIAKVGGAPSRSASVPITRQGVADAVKMLVSAMNESGLSPWEFMPVFPIP*
JGI24142J45722_1060206	JGI24142J45722_10602062	F053674	MKKVLFVLVIMMTVLAVNAQTSKTTVTNAKSTRTTVKVADLQKNITDNIAKDYAGFTIKEAS
JGI24142J45722_1062404	JGI24142J45722_10624042	F087142	MACQMPIKVPRAWAKQMTEFQFLENLEFYQRRFEKHHHRFIRDLNFYIRNNRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYTNILRFSPDFNNSTGVPGANINPRGSGKKE*
JGI24142J45722_1062926	JGI24142J45722_10629262	F088781	MGITVTEPVSPEESLLLAARVLQAAADQAEADTRSGQTSYVTEAAVKVLLWLCGSLLPEDRDLASSTQQGRSLRVLLREGEAELRRFPIDAYPAGTVDVVVGLCDLIRSTPGDPT*
JGI24142J45722_1068837	JGI24142J45722_10688372	F097269	MSVATDTVRSMSTHTRSGLGSLGDRVRRPSTAFCLVDGQSPGLVMEWLKVADLWSAGVAYLDEGALVVSILPASRLEKAPVS*
JGI24142J45722_1068874	JGI24142J45722_10688741	F088782	VEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLLDREKKVLRVRNRNPRSGPPRVFPGRTTGVTNPDLDPRAVWQLSHMVDVALRRDERWALAPGGHGSSDYFLGLETGPWQGQRRLIVTAQPAVIARQWAGARLGIAKVGGAPSRSAGVPITPQGVGDAVKMLVSAMTESGLSPWEFMPVFPIP*
JGI24142J45722_1075317	JGI24142J45722_10753171	F067652	MNVGDPNGMVQVKLLPRESDMLVVVMITEKVKAEGAKGHYYK*
JGI24142J45722_1076210	JGI24142J45722_10762101	F030615	GDICFYETKVKTWLGWISFSVFYKTDIIHILSDPSVQKSMAYERIDQYCMVKGYKRKEIEITEINQCKNKKWLFLQRIYSD*
JGI24142J45722_1076518	JGI24142J45722_10765181	F092168	PDVPPEPRRAVNGRLLVPFALLVVVAVVVTLAIGGAGRGALNPVSLQTPTSSPTVYQPVDVASESMFXPAPPSDDVEALPLIVTLAESVPRTADGILSFRVSVCVSGTVGSAAGGRVPILRNFWTLVSRSTNELLAPMDSGPEPVFPSEWYYLKGQCASGYISFKASAGFVPQFLAYQDNRFQWSWRVT*
JGI24142J45722_1078369	JGI24142J45722_10783692	F080207	MRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEA
JGI24142J45722_1080118	JGI24142J45722_10801182	F087142	MTEFQFLENLDFYRRRFEKHHHKFIRDLNFYIRNNRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYTNILRFSPDFNNLNGVPDANINPTGSGKKE*
JGI24142J45722_1090769	JGI24142J45722_10907692	F070687	MTVASLAWIAYKTGWYFYALGPQLVICMLLGYFAARKTAGDLVNWLVVGFFAALVPLAGILIMLGLWWRARAAMPDSAPENREPP
JGI24142J45722_1098935	JGI24142J45722_10989351	F088360	PSMSRHDRQFIGRLSVILFLLAGLAWQIYEAIYAASLPAVDPTGFNAGDLAALPLLLFPPALYLAALALELTPTSHRVAWGLVALVAGATTAYNLATAMTGTATNLNLTYYILLGVLTLLAVPRAFSAGRMSWSRNSMPRHA*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002986: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-31A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences