NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002954

3300002954: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047



Overview

Basic Information
IMG/M Taxon OID3300002954 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0085736 | Gp0057372 | Ga0003886
Sample NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10931131
Sequencing Scaffolds14
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
Not Available3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium4
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N31
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)N/ADepth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000761Metagenome / Metatranscriptome902Y
F004146Metagenome / Metatranscriptome451Y
F005601Metagenome / Metatranscriptome395Y
F014526Metagenome / Metatranscriptome262N
F031158Metagenome / Metatranscriptome183N
F033397Metagenome / Metatranscriptome177Y
F037438Metagenome / Metatranscriptome168Y
F038357Metagenome / Metatranscriptome166Y
F041945Metagenome / Metatranscriptome159Y
F049144Metagenome / Metatranscriptome147N
F064054Metagenome / Metatranscriptome129Y
F070432Metagenome / Metatranscriptome123Y
F092648Metagenome / Metatranscriptome107Y
F097746Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20281J44786_100038All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1962Open in IMG/M
JGI20281J44786_100105All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1481Open in IMG/M
JGI20281J44786_100320Not Available1049Open in IMG/M
JGI20281J44786_100859All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium745Open in IMG/M
JGI20281J44786_100928All Organisms → cellular organisms → Bacteria729Open in IMG/M
JGI20281J44786_101061All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium695Open in IMG/M
JGI20281J44786_101251All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium662Open in IMG/M
JGI20281J44786_101508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3620Open in IMG/M
JGI20281J44786_101545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium614Open in IMG/M
JGI20281J44786_102049All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium564Open in IMG/M
JGI20281J44786_102203All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium551Open in IMG/M
JGI20281J44786_102385Not Available535Open in IMG/M
JGI20281J44786_102771All Organisms → cellular organisms → Bacteria508Open in IMG/M
JGI20281J44786_102782Not Available507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20281J44786_100038JGI20281J44786_1000382F049144MRVLHLIRRIGALNRGNIITPRQIESACSARLAHTGHNRHSNDTTKPDLALSQIAARFTRHDVKWSRGAFMIIDRRTANPIARLRPIPDTDRFELFYWSNVKGRWTTFGNLGRMKLMLESAHEIVESDPMFRIPRGR*
JGI20281J44786_100105JGI20281J44786_1001052F038357MCPGDPLGNHRQRPIAVSLVFEPVLAHEDGMGVPAPLPHQGRAGLQRSAGVERTSAFLELSRQNLQAALQGGGRAAMGTLLQLIGEPPDDQIATEAQRRADVMQSPPRTPQLLCRLTDQLSDFAINLCQCQTSQPVLPAVVCTERLARVLASRSVVEWGFHGLAGSAMRYTRPRSSLAEARGSPSFFFKVPEKTPRTV*
JGI20281J44786_100320JGI20281J44786_1003201F037438VVGYYNGAWTTDRRRALAFRRREAAEAHAARMRDRCPRNAELINVEEIAAAN*
JGI20281J44786_100859JGI20281J44786_1008592F031158GTSDAPWIEEQRARLIVVETVRRIVAAEYDEVWRKPKLAAKCRAVQLFEQVSPAMAKAQAVLPLECTKQALKGLRGCLHPDLRVGSPCAAAAQAAARSFRKRFGPGADRKIWEMAALILEEAILFGRNDGIDDPVAAAERLERAKVLTAPV*
JGI20281J44786_100928JGI20281J44786_1009282F033397VTPFFLGGVDSENGGAEAAYSALRERSQIAVGCPARSRRIFKLSCRFEGCDCEIEVGRPLPHRRDVVAAILDHGREEAFVVHTLDGAGAPTRIARPVYSVTDFS*
JGI20281J44786_101061JGI20281J44786_1010612F004146ANIAEQPRXAKATTPQNSSRSRYAIDPETITAGRLPQRAPVVTSAANPHYQKHFDRLFDLAKAGDWDGVRNYEVKGSNSYSKMVARYRQDLLAVHAASEAAP*
JGI20281J44786_101251JGI20281J44786_1012511F004146PAVIAAGKLPDKAPVVTSAANPHYQKRFDELHKLAAAGDWAAVRDYKVSGSNSYSKLVARYQQDLLALHAASGDAQ*
JGI20281J44786_101508JGI20281J44786_1015081F092648MRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFV
JGI20281J44786_101545JGI20281J44786_1015452F005601MPKITVPIAAHFLTGSILTLAIPLGVLIVVTIWYVLLWRRGAGER*
JGI20281J44786_102049JGI20281J44786_1020491F014526MKKXELRAAISRGYREMSELTKVKCGGDKCPGVGNRAYRCCDRMHCQMTIDHAYKDWGIRLPTTGHQLPLMGPTGCTALPHLRPWCTLHQCQIQETGSTKDRGWDAKYFRLRNKLIRLEQQLAAM*
JGI20281J44786_102203JGI20281J44786_1022031F070432KGGGGKDPNRVSKYGSIVFDAEAAPSPGSEAQTTLQPGQYVALGAPGEGPPKLHTAFTVTAAKSPMSLPTPEATVRSIEFGFRGPATLHDGELVRFENEGFLVHMDIAFPAKSNKAAKQIVKAMLAGKEKGLEKLAAGAPFSFAGPLSSGSYQQETITAKPGWYVQACFMETQDGRDHTRLGM
JGI20281J44786_102385JGI20281J44786_1023851F064054ERRETDWLITDWERETRQLGHALALMTLDVSAMTGPKWAHRFIIAVDPVVEDSSFLFYGARFASLLGLPETPNHSIPIVAQLPTQYIPVFTRGCITSTLSSSAVRMQGAVERENGGQELYRAAFIRLSLDGNRQQHLVLGAFNCRVAEPAKV*
JGI20281J44786_102406JGI20281J44786_1024061F000761MSTLDEITQEKQRVSEALARIDAQRQKLAGQLGELEATERVLARYSTGTKRTVSAKSPPSPTKAVAPAQRQRGRRPATTAKP
JGI20281J44786_102771JGI20281J44786_1027711F041945HLKPAQFDGEQMSPEQMVEKIRQQQKEIEYLKRQREILKKAMSILGEEPHSGMR*
JGI20281J44786_102782JGI20281J44786_1027821F097746MADEGEQIPVEQESNTGKWILLIVAIVFVAATVYGYVTTTQHVDKITKDLGDSQAQVAELKNRMQTAEASEETLAHQLGITKKELTQRAAQL
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